The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP003811	Methylobacterium oryzae CBMB20 chromosome, complete genome	6286629	1489488	1596163	6286629	transposase,bacteriocin,integrase	Bacillus_phage(16.67%)	48	1530186:1530203	1601632:1601649
WP_100793923.1|1489488_1490294_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_148311223.1|1490419_1490800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158498441.1|1490796_1490964_-	glycosyltransferase family 25 protein	NA	NA	NA	NA	NA
WP_148311224.1|1490990_1491383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148311225.1|1491587_1492319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100793925.1|1492770_1493580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043756321.1|1493623_1495615_-	glycosyltransferase family 2 protein	NA	W5S6L1	Pithovirus	46.2	1.1e-56
WP_162483074.1|1496359_1496668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100793926.1|1499232_1501437_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	26.8	5.7e-30
WP_052083836.1|1501660_1502944_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_043756324.1|1502975_1504763_+	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_043354299.1|1504884_1505121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052083571.1|1505942_1508465_+	response regulator	NA	A0A1V0SGX0	Hokovirus	31.7	3.1e-40
WP_043388009.1|1508861_1509458_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_043354302.1|1510311_1510866_-	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_158498442.1|1510962_1511256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043756327.1|1513271_1514105_+	porin family protein	NA	NA	NA	NA	NA
WP_043382471.1|1514514_1514724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052083572.1|1515724_1515964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043756333.1|1516350_1517676_-|bacteriocin	NHLP bacteriocin system secretion protein	bacteriocin	NA	NA	NA	NA
WP_148311226.1|1517730_1520340_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	29.2	3.8e-17
WP_100793928.1|1520336_1522478_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	22.5	4.2e-14
WP_043354744.1|1522586_1523048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043354747.1|1523106_1523616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043756339.1|1523681_1526357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107067063.1|1526474_1526822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043756344.1|1527193_1528273_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_043756346.1|1528269_1531389_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
1530186:1530203	attL	GGTGCGCCGGCTCGTCGA	NA	NA	NA	NA
WP_052083573.1|1531641_1532226_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_100793929.1|1532894_1533856_-|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	23.4	4.1e-09
WP_100793930.1|1533948_1534737_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_085985307.1|1535054_1536156_+|transposase	IS3-like element ISMra1 family transposase	transposase	S5WIU1	Leptospira_phage	42.6	3.4e-52
WP_043756353.1|1536631_1538194_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_100794077.1|1538340_1539897_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_100793931.1|1539859_1540093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043756357.1|1540083_1540446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100793933.1|1540759_1541407_+|transposase	IS3 family transposase	transposase	A0A1B3AZE5	Gordonia_phage	39.8	2.7e-25
WP_043756360.1|1543149_1544829_+|transposase	IS1182 family transposase	transposase	NA	NA	NA	NA
WP_100793935.1|1545564_1546404_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_100793936.1|1546607_1547706_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.2	2.4e-53
WP_167337805.1|1547839_1548004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100793937.1|1560666_1583523_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	26.5	2.1e-143
WP_091955467.1|1584395_1585662_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_158498443.1|1587913_1589659_+	cyclic peptide export ABC transporter	NA	F2Y165	Organic_Lake_phycodnavirus	26.7	3.0e-10
WP_043756370.1|1590154_1592356_+	ATP-dependent RecD-like DNA helicase	NA	A0A1P8DII4	Virus_Rctr197k	32.1	1.3e-50
WP_043756372.1|1593182_1594172_-	transporter	NA	NA	NA	NA	NA
WP_043756374.1|1594645_1594894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043756376.1|1595611_1596163_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
1601632:1601649	attR	TCGACGAGCCGGCGCACC	NA	NA	NA	NA
>prophage 2
NZ_CP003811	Methylobacterium oryzae CBMB20 chromosome, complete genome	6286629	1906008	1914827	6286629		Streptococcus_phage(33.33%)	8	NA	NA
WP_043756672.1|1906008_1907646_-	acyl-CoA synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	27.9	3.7e-34
WP_051044948.1|1907725_1908340_-	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_043354541.1|1908658_1909306_+	ParA family protein	NA	W8ECJ6	Mycobacterium_phage	34.6	1.2e-12
WP_043354543.1|1909289_1909628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043761076.1|1909909_1911241_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	57.1	1.6e-19
WP_043354561.1|1911413_1912658_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	36.2	1.6e-50
WP_100794081.1|1912668_1913391_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	42.7	2.9e-31
WP_043756674.1|1913774_1914827_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	38.7	4.6e-06
>prophage 3
NZ_CP003811	Methylobacterium oryzae CBMB20 chromosome, complete genome	6286629	5375577	5439905	6286629	transposase,integrase	Stx2-converting_phage(33.33%)	48	5376451:5376467	5380386:5380402
WP_052083708.1|5375577_5376390_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
5376451:5376467	attL	GATCGGCGAACGAACCG	NA	NA	NA	NA
WP_158498471.1|5376832_5378491_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_148311270.1|5378733_5385009_-	hypothetical protein	NA	NA	NA	NA	NA
5380386:5380402	attR	CGGTTCGTTCGCCGATC	NA	NA	NA	NA
WP_043759905.1|5385408_5385648_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_139237855.1|5385619_5385949_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_158498472.1|5385987_5386152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052083710.1|5386302_5386962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043759907.1|5387035_5387863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052083711.1|5387937_5389896_+	AAA family ATPase	NA	C7U047	Ostreococcus_tauri_virus	31.1	3.3e-29
WP_043759909.1|5389985_5390330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100794038.1|5390839_5392885_+	recombinase family protein	NA	A0A2P1JU08	Anoxybacillus_phage	27.1	1.0e-09
WP_052083712.1|5393087_5395184_+	recombinase family protein	NA	NA	NA	NA	NA
WP_139237856.1|5395318_5395984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139237857.1|5395980_5397141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043759912.1|5397152_5399297_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_148311271.1|5400178_5401084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100794122.1|5403470_5404037_+	DNA mismatch endonuclease Vsr	NA	I6NSG0	Burkholderia_phage	43.8	1.3e-23
WP_043759914.1|5404173_5406369_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_052083713.1|5406365_5407442_-	DNA cytosine methyltransferase	NA	A0A0R6PG08	Moraxella_phage	52.9	2.5e-95
WP_043759915.1|5407645_5413528_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_158498473.1|5413549_5415226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148311273.1|5415610_5418199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148311274.1|5420307_5421834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158498474.1|5422142_5424452_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_091981902.1|5424468_5425047_+	DUF1353 domain-containing protein	NA	A0A0E3Y4V5	Fusobacterium_phage	36.7	4.2e-09
WP_043759919.1|5425167_5425506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139237902.1|5425515_5425797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148311275.1|5426326_5427496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043759921.1|5427782_5428100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043759923.1|5428236_5428443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043759926.1|5428714_5428966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043759928.1|5429089_5429302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100794041.1|5429303_5429789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139237904.1|5429854_5430361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148311276.1|5430429_5430654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052083721.1|5430673_5431474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139237906.1|5431535_5432090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043759932.1|5432125_5432836_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	45.3	8.2e-47
WP_139237907.1|5433025_5433673_-	biotin/lipoyl-binding protein	NA	NA	NA	NA	NA
WP_162483077.1|5433636_5434401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162483078.1|5434406_5434901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043759934.1|5435245_5435686_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_043759936.1|5435682_5436039_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	48.1	6.6e-21
WP_100794123.1|5436145_5437624_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	44.3	1.5e-103
WP_091981917.1|5437673_5438150_+	VOC family protein	NA	NA	NA	NA	NA
WP_100794043.1|5438383_5438875_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_052083723.1|5439170_5439446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052083725.1|5439557_5439905_+|transposase	transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	52.5	2.0e-22
>prophage 4
NZ_CP003811	Methylobacterium oryzae CBMB20 chromosome, complete genome	6286629	5676666	5693996	6286629	head,tail,protease,capsid,portal	Paracoccus_phage(36.36%)	20	NA	NA
WP_043760110.1|5676666_5677860_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	39.4	7.3e-56
WP_043760111.1|5677953_5678466_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	46.6	4.8e-25
WP_052083759.1|5678492_5679785_+|capsid	phage major capsid protein	capsid	A0A2D1GNH4	Pseudomonas_phage	43.8	7.8e-80
WP_043353382.1|5680041_5680587_-	DNA starvation/stationary phase protection protein Dps	NA	A0A222YYG6	Streptomyces_phage	27.7	4.8e-07
WP_078947095.1|5680699_5681623_-|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
WP_043760114.1|5681749_5682520_-|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
WP_043760115.1|5682545_5683109_+	phiE125 gp8 family protein	NA	NA	NA	NA	NA
WP_043349544.1|5683143_5683497_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_043387353.1|5683493_5683922_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_043349538.1|5683933_5684344_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
WP_043387351.1|5684349_5684682_+	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_075382066.1|5684696_5684900_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_043760119.1|5684909_5685482_+|tail	phage tail tape measure protein	tail	A0A1B2AP03	Escherichia_phage	40.0	3.5e-08
WP_043760121.1|5685525_5686167_+	DUF2460 domain-containing protein	NA	A0A0B5A2K3	Paracoccus_phage	48.8	1.2e-44
WP_043760123.1|5686181_5687057_+	DUF2163 domain-containing protein	NA	A0A0B5A5B8	Paracoccus_phage	39.6	2.0e-55
WP_052083761.1|5687053_5687629_+	C40 family peptidase	NA	F4YXU4	Roseobacter_phage	48.2	3.6e-29
WP_043760124.1|5687616_5691525_+	glycoside hydrolase TIM-barrel-like domain-containing protein	NA	A0A0B5A7K5	Paracoccus_phage	35.6	2.2e-178
WP_043760126.1|5691543_5692800_+	DUF2793 domain-containing protein	NA	A0A0K1LM54	Rhodobacter_phage	44.9	2.2e-39
WP_043761678.1|5692839_5693373_-	lipase	NA	NA	NA	NA	NA
WP_043760128.1|5693486_5693996_+	hypothetical protein	NA	X2CYK8	Brucella_phage	39.0	5.7e-10
