The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009427	Mycobacterium tuberculosis strain 96121 chromosome, complete genome	4410945	2951387	2989667	4410945	capsid,head,integrase,tRNA,terminase,protease	Mycobacterium_phage(30.0%)	47	2980196:2980223	2989820:2989847
WP_003413486.1|2951387_2953466_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2953574_2953802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038438590.1|2953798_2955193_-	PE family protein	NA	NA	NA	NA	NA
WP_003413574.1|2956054_2956495_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2956641_2957319_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2957303_2957657_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2957669_2958095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2958091_2958766_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2958843_2959665_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2959800_2960694_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2960696_2961515_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2961529_2962711_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2962769_2963201_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2963714_2964956_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003413600.1|2965265_2965628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2965974_2967099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2967100_2967640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2967778_2969077_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2969115_2969397_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003903963.1|2969541_2970027_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2970053_2970311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031654299.1|2970311_2972648_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2972676_2972919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2972919_2973597_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2973792_2974449_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2974611_2975058_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2975232_2975565_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2975684_2976044_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2976145_2976604_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2976739_2977120_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2977116_2978613_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_003912823.1|2978847_2979039_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2979111_2979285_+	hypothetical protein	NA	NA	NA	NA	NA
2980196:2980223	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2980329_2980761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003908027.1|2980757_2981756_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	1.6e-61
WP_003900539.1|2981769_2982234_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003908028.1|2982221_2982473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003901443.1|2982643_2984083_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2984090_2984624_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2984776_2985403_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003903987.1|2985434_2985758_-	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899415.1|2985837_2986083_-	type II toxin-antitoxin system antitoxin	NA	NA	NA	NA	NA
WP_003908030.1|2986079_2987507_-	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899417.1|2987508_2987901_-	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_003899418.1|2987897_2988158_-	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	64.6	3.0e-15
WP_003900543.1|2988174_2988537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899420.1|2988539_2989667_-|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
2989820:2989847	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP009427	Mycobacterium tuberculosis strain 96121 chromosome, complete genome	4410945	3104259	3132408	4410945	integrase,tRNA,transposase	Burkholderia_virus(50.0%)	28	3104209:3104268	3132400:3133754
3104209:3104268	attL	TGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGT	NA	NA	NA	NA
WP_087902221.1|3104259_3105520_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003908913.1|3105572_3106700_+	MinD/ParA family protein	NA	NA	NA	NA	NA
WP_003414139.1|3107531_3108764_-	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_003414142.1|3108789_3109995_-	lipid-transfer protein	NA	NA	NA	NA	NA
WP_003899482.1|3110027_3111407_-|transposase	transposase	transposase	A0A7P9	Microcystis_virus	30.3	9.3e-31
WP_003414146.1|3111406_3111988_-|transposase	IS607-like element IS1602 family transposase	transposase	F9VHY9	Thermus_phage	30.6	5.0e-18
WP_003414147.1|3112189_3113086_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003414149.1|3113082_3113766_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA	NA
WP_003414151.1|3113762_3114737_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_003414153.1|3114881_3115445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003414155.1|3115444_3117133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003414157.1|3117136_3117463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003414158.1|3117593_3118223_+	DUF3558 domain-containing protein	NA	NA	NA	NA	NA
WP_003899485.1|3118241_3119891_+	CocE/NonD family hydrolase	NA	NA	NA	NA	NA
WP_003414166.1|3119992_3120349_-	type II toxin-antitoxin system toxin endoribonuclease MazF9	NA	NA	NA	NA	NA
WP_003901465.1|3120332_3120563_-	antitoxin MazE	NA	NA	NA	NA	NA
WP_003414172.1|3120605_3121649_-	DUF2293 domain-containing protein	NA	NA	NA	NA	NA
WP_003911993.1|3121839_3122115_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_003917684.1|3122290_3122545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003414181.1|3122692_3123097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414184.1|3123093_3123285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899488.1|3123483_3124638_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_003899489.1|3124871_3125129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414190.1|3125233_3125545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414195.1|3125964_3126573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414198.1|3126643_3128053_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_003414201.1|3128049_3128862_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_087902221.1|3131146_3132408_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
3132400:3133754	attR	ACCTGACATGACCCCATCCTTTCCAAGAACTGGAGTCTCCGGACATGCCGGGGCGGTTCAGGGTTTTGGGTCTGACGACTCGCGGCGAGCACGTCTCACCCAGCAGGCGGTGAGGTTGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGGACGAGCTGGACCGCATCAGCGATGCTGAGCTGAGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTGTCTCAATCGTGCCGTCTGCGGTGACACGCTCCAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCACCAGGATCAGCGCCAAGCCAGTTAGCGCAATCCAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTCCCGGACCATCTGCAGCTCGCCCGGGTCCATGCGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCGGAGTCATCCGCGCGGGCCGGCGCGATTGTTGCCGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTGGCGATTTACGACGCTGACGGGAACTCGTGCGAATGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGATCCGCGAAATTCACTGCGCGTTATTCAAGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTCGGACAGCATCTCCCCGGGCGGGCAGCAGATATCCCATGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCGGAAGTCAACTAGAGCGGGTGTCGAACGCTGCCCGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACATGCGAATCCGCTGTCAGCACATGGGATTCCGAGTGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTAGGCGGCCCCGGCGAGGCTGGGGGCGGTTTCACGCGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACGCGGAGCTGCGGCGCCGGATGATGGCGTTGCTCAAGAGCAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCAAAAACGGGGACGGCATGCTGCATGCCCTAACGTCGTGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCAGCGCAGACGGCAGCCCCGAGTACTCGCTCT	NA	NA	NA	NA
