The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	4379376	2919830	2958103	4379376	capsid,tRNA,terminase,integrase,head,protease	Mycobacterium_phage(30.0%)	47	2948632:2948659	2958256:2958283
WP_003413486.1|2919830_2921909_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2922017_2922245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009940032.1|2922241_2923627_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2923971_2924472_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2924488_2924929_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2925075_2925753_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2925737_2926091_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2926103_2926529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901438.1|2926525_2927200_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2927277_2928099_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2928234_2929128_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2929130_2929949_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2929963_2931145_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2931203_2931635_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2932148_2933390_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2933699_2934062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003902322.1|2934408_2935533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2935534_2936074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2936213_2937512_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2937550_2937832_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2937976_2938462_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003908019.1|2938488_2938743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899405.1|2941112_2941355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2941355_2942033_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2942228_2942885_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2943047_2943494_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2943668_2944001_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2944120_2944480_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2944581_2945040_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2945175_2945556_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2945552_2947049_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_003912823.1|2947283_2947475_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2947547_2947721_+	hypothetical protein	NA	NA	NA	NA	NA
2948632:2948659	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2948765_2949197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2949193_2950192_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2950205_2950670_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003908028.1|2950657_2950909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003901443.1|2951079_2952519_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2952526_2953060_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2953212_2953839_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003899414.1|2953870_2954194_-	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899415.1|2954273_2954519_-	type II toxin-antitoxin system antitoxin	NA	NA	NA	NA	NA
WP_003899416.1|2954515_2955943_-	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899417.1|2955944_2956337_-	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_003899418.1|2956333_2956594_-	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	64.6	3.0e-15
WP_003900543.1|2956610_2956973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899420.1|2956975_2958103_-|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
2958256:2958283	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	4379376	3681517	3768845	4379376	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3681517_3682779_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3682842_3683004_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3683025_3684555_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3684487_3685426_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3685434_3686802_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3686870_3688088_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3688183_3689692_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3689688_3690840_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3691030_3691876_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3692350_3692791_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3692824_3693694_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3693714_3694725_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3695009_3695642_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3695708_3696938_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3697220_3698570_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3698581_3699721_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3699717_3700449_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_038438654.1|3700457_3708029_-	PPE family protein	NA	NA	NA	NA	NA
WP_013988995.1|3708077_3713828_-	PE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3714251_3714509_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003901612.1|3714764_3724238_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3724863_3725310_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003911006.1|3725346_3726087_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3726381_3726669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417738.1|3738398_3739193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3739274_3739646_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3739543_3739762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3739788_3740049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3740163_3740553_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3740566_3740860_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3740856_3741702_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3741825_3742101_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3742097_3742355_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3742396_3743587_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3743703_3744072_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3744068_3744620_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3744626_3745208_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3745188_3745557_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3745534_3745927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901616.1|3745923_3748554_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003901617.1|3748789_3749254_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_009938654.1|3749620_3751396_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3751396_3752041_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3752039_3752474_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3752562_3755802_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3755993_3757334_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3757375_3758551_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3758604_3758709_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3758787_3759429_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3759429_3759678_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3759682_3761110_+	amidase	NA	NA	NA	NA	NA
WP_038438681.1|3761217_3761871_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3761909_3763415_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3763419_3764310_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003918607.1|3764318_3766157_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003417912.1|3766153_3767143_-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
WP_087902221.1|3767584_3768845_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
