assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	1	366122-366820	1	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366410-366451|366485-366517	NZ_CP009426.1_374426-374467|NZ_CP009426.1_373241-373273	NA	10	10	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP009426.1_363135_363438_+,NA|161aa|down_1|NZ_CP009426.1_376215_376698_-,NA|410aa|down_5|NZ_CP009426.1_378814_380044_+	NA|262aa|up_9|NZ_CP009426.1_357830_358616_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP009426.1_358604_359408_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP009426.1_359417_360815_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP009426.1_360993_362769_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP009426.1_362911_363139_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP009426.1_363135_363438_+	NA	NA|74aa|up_3|NZ_CP009426.1_363485_363707_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP009426.1_363703_364129_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP009426.1_364263_364896_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP009426.1_364892_365801_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP009426.1_375556_376228_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP009426.1_376215_376698_-	NA	NA|239aa|down_2|NZ_CP009426.1_376755_377472_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP009426.1_377573_378230_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP009426.1_378299_378791_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP009426.1_378814_380044_+	NA	NA|621aa|down_6|NZ_CP009426.1_380198_382061_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP009426.1_382132_382519_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP009426.1_382521_383184_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP009426.1_383244_384129_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	2	630775-630912	1	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	630793-630810|630793-630810|630877-630894	NZ_CP009426.1_23824-23841|NZ_CP009426.1_1411310-1411327|NZ_CP009426.1_973158-973175	NA	3	3	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP009426.1_621511_621673_-,NA|478aa|up_0|NZ_CP009426.1_627790_629224_-,NA|450aa|down_2|NZ_CP009426.1_632547_633897_-,NA|93aa|down_5|NZ_CP009426.1_635427_635706_-	NA|325aa|up_9|NZ_CP009426.1_619281_620256_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP009426.1_620297_621515_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP009426.1_621511_621673_-	NA	NA|106aa|up_6|NZ_CP009426.1_621719_622037_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|629aa|up_5|NZ_CP009426.1_622183_624070_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP009426.1_623965_624973_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP009426.1_625054_625933_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP009426.1_625949_626744_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP009426.1_626740_627781_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP009426.1_627790_629224_-	NA	NA|211aa|down_0|NZ_CP009426.1_631235_631868_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP009426.1_631864_632527_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP009426.1_632547_633897_-	NA	NA|381aa|down_3|NZ_CP009426.1_633908_635051_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP009426.1_635065_635368_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP009426.1_635427_635706_-	NA	NA|418aa|down_6|NZ_CP009426.1_635702_636956_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP009426.1_637075_637462_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP009426.1_637524_638409_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP009426.1_638504_639407_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	3	691520-691596	2	CRISPRCasFinder	no	c2c9_V-U4	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP009426.1_677202_677418_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP009426.1_677414_677822_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP009426.1_677881_678568_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP009426.1_678721_681355_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP009426.1_681377_683765_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP009426.1_683902_684625_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP009426.1_684621_685419_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP009426.1_685420_686308_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP009426.1_686313_687528_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP009426.1_688553_689999_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP009426.1_692731_694282_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP009426.1_694333_694726_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP009426.1_694722_694980_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP009426.1_695162_696398_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP009426.1_696648_697062_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP009426.1_697058_697295_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP009426.1_697398_697905_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP009426.1_698018_698489_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP009426.1_698532_699294_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP009426.1_699350_699662_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	4	839146-839774	2	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	NACGGCGGGGCCGGCGGGGCCGGCGG	26	1	4	839403-839421|839403-839421|839403-839421|839403-839421	NZ_CP009426.1_2841899-2841881|NZ_CP009426.1_886233-886215|NZ_CP009426.1_984550-984568|NZ_CP009426.1_1566973-1566955	NA	10	10	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|71aa|up_9|NZ_CP009426.1_829856_830069_+,NA|176aa|up_6|NZ_CP009426.1_831933_832461_+,NA|186aa|up_4|NZ_CP009426.1_834043_834601_-,NA|46aa|down_2|NZ_CP009426.1_841924_842062_-,NA|82aa|down_3|NZ_CP009426.1_842220_842466_+,NA|242aa|down_9|NZ_CP009426.1_850928_851654_-	NA|71aa|up_9|NZ_CP009426.1_829856_830069_+	NA	NA|183aa|up_8|NZ_CP009426.1_830217_830766_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|283aa|up_7|NZ_CP009426.1_830970_831819_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|176aa|up_6|NZ_CP009426.1_831933_832461_+	NA	NA|176aa|up_5|NZ_CP009426.1_833138_833666_+	pfam00934, PE, PE family	NA|186aa|up_4|NZ_CP009426.1_834043_834601_-	NA	NA|169aa|up_3|NZ_CP009426.1_834597_835104_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|49aa|up_2|NZ_CP009426.1_835216_835363_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|176aa|up_1|NZ_CP009426.1_835311_835839_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|844aa|up_0|NZ_CP009426.1_835858_838390_+	pfam00934, PE, PE family	NA|86aa|down_0|NZ_CP009426.1_841134_841392_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|143aa|down_1|NZ_CP009426.1_841415_841844_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|46aa|down_2|NZ_CP009426.1_841924_842062_-	NA	NA|82aa|down_3|NZ_CP009426.1_842220_842466_+	NA	NA|295aa|down_4|NZ_CP009426.1_842534_843419_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|391aa|down_5|NZ_CP009426.1_843429_844602_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|511aa|down_6|NZ_CP009426.1_844608_846141_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|585aa|down_7|NZ_CP009426.1_846346_848101_+	pfam00934, PE, PE family	NA|646aa|down_8|NZ_CP009426.1_848290_850228_-	pfam00823, PPE, PPE family	NA|242aa|down_9|NZ_CP009426.1_850928_851654_-	NA
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	5	926634-927545	3	CRT	no	csa3	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGGGCCGGCGG	21	1	21	927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527|927501-927527	NZ_CP009426.1_833662-833688|NZ_CP009426.1_330967-330941|NZ_CP009426.1_333981-333955|NZ_CP009426.1_336331-336305|NZ_CP009426.1_840903-840929|NZ_CP009426.1_926367-926393|NZ_CP009426.1_2415349-2415323|NZ_CP009426.1_332204-332178|NZ_CP009426.1_334932-334906|NZ_CP009426.1_335271-335245|NZ_CP009426.1_674621-674595|NZ_CP009426.1_837124-837150|NZ_CP009426.1_838270-838296|NZ_CP009426.1_926268-926294|NZ_CP009426.1_1211854-1211880|NZ_CP009426.1_1654488-1654462|NZ_CP009426.1_1855628-1855602|NZ_CP009426.1_2041518-2041492|NZ_CP009426.1_3774828-3774854|NZ_CP009426.1_3910545-3910571|NZ_CP009426.1_3910701-3910727	NA	19	19	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP009426.1_931654_932206_-,NA|81aa|down_8|NZ_CP009426.1_937669_937912_+	NA|685aa|up_9|NZ_CP009426.1_914444_916499_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|389aa|up_8|NZ_CP009426.1_916664_917831_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP009426.1_917918_918935_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP009426.1_919096_919738_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP009426.1_919818_920874_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP009426.1_920925_921318_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP009426.1_921375_921798_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP009426.1_921759_922050_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP009426.1_922154_923060_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP009426.1_923078_923894_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP009426.1_927913_930562_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP009426.1_931029_931674_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP009426.1_931654_932206_-	NA	NA|241aa|down_3|NZ_CP009426.1_932286_933009_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP009426.1_933079_934108_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP009426.1_934796_935567_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP009426.1_935653_936466_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP009426.1_936533_937394_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP009426.1_937669_937912_+	NA	NA|431aa|down_9|NZ_CP009426.1_938188_939481_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	6	1487692-1487811	1	PILER-CR	no	DinG	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type IV-A	AACCCGCCGGTGCCGCCGGCACCGCCGGCG	30	1	1	1487722-1487740	NZ_CP009426.1_399243-399261	NA	2	2	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|99aa|up_4|NZ_CP009426.1_1483871_1484168_+,NA|68aa|up_0|NZ_CP009426.1_1487043_1487247_-,NA	NA|497aa|up_9|NZ_CP009426.1_1476517_1478008_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|542aa|up_8|NZ_CP009426.1_1478088_1479714_-	cd07302, CHD, cyclase homology domain	NA|536aa|up_7|NZ_CP009426.1_1479783_1481391_-	cd07302, CHD, cyclase homology domain	NA|568aa|up_6|NZ_CP009426.1_1481403_1483107_-	COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]	NA|224aa|up_5|NZ_CP009426.1_1483177_1483849_+	PRK03298, PRK03298, endonuclease NucS	NA|99aa|up_4|NZ_CP009426.1_1483871_1484168_+	NA	NA|153aa|up_3|NZ_CP009426.1_1484202_1484661_-	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE)	NA|394aa|up_2|NZ_CP009426.1_1484739_1485921_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|305aa|up_1|NZ_CP009426.1_1486050_1486965_+	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|68aa|up_0|NZ_CP009426.1_1487043_1487247_-	NA	NA|732aa|down_0|NZ_CP009426.1_1488463_1490659_-	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|702aa|down_1|NZ_CP009426.1_1490666_1492772_-	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|864aa|down_2|NZ_CP009426.1_1492910_1495502_+	cd04299, GT35_Glycogen_Phosphorylase-like, proteins similar to glycogen phosphorylase	DinG|665aa|down_3|NZ_CP009426.1_1495541_1497536_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|449aa|down_4|NZ_CP009426.1_1497559_1498906_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|102aa|down_5|NZ_CP009426.1_1499007_1499313_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|219aa|down_6|NZ_CP009426.1_1499272_1499929_+	pfam09438, DUF2017, Domain of unknown function (DUF2017)	NA|345aa|down_7|NZ_CP009426.1_1499945_1500980_+	COG3191, DmpA, L-aminopeptidase/D-esterase [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|147aa|down_8|NZ_CP009426.1_1500987_1501428_+	cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding)	NA|94aa|down_9|NZ_CP009426.1_1501449_1501731_+	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	7	1570533-1571579	3	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1570733-1570754	NZ_CP009426.1_1211045-1211024	NA	14	14	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP009426.1_1562296_1562614_+,NA	NA|103aa|up_9|NZ_CP009426.1_1559811_1560120_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP009426.1_1560116_1561736_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP009426.1_1562296_1562614_+	NA	NA|209aa|up_6|NZ_CP009426.1_1562748_1563375_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP009426.1_1563440_1563773_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP009426.1_1563788_1565045_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP009426.1_1565172_1566384_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP009426.1_1566456_1567935_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP009426.1_1567931_1569317_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP009426.1_1569394_1570429_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP009426.1_1572451_1572853_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP009426.1_1572849_1573107_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP009426.1_1573189_1574149_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP009426.1_1574173_1575136_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP009426.1_1575269_1575872_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP009426.1_1575952_1577920_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP009426.1_1577937_1578762_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP009426.1_1578930_1579413_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP009426.1_1579484_1580309_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP009426.1_1580505_1581444_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	8	2067742-2067996	4	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2067823-2067840|2067823-2067840|2067913-2067930	NZ_CP009426.1_400722-400705|NZ_CP009426.1_606829-606812|NZ_CP009426.1_3417924-3417907	NA	5	5	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP009426.1_2067101_2067365_-,NA	NA|165aa|up_9|NZ_CP009426.1_2053451_2053946_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP009426.1_2054293_2054971_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP009426.1_2055329_2058155_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP009426.1_2058381_2059242_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP009426.1_2059282_2060149_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP009426.1_2060153_2062040_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP009426.1_2062055_2064089_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP009426.1_2064208_2066434_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP009426.1_2066709_2067105_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP009426.1_2067101_2067365_-	NA	NA|346aa|down_0|NZ_CP009426.1_2069133_2070171_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP009426.1_2070170_2071538_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP009426.1_2071711_2073148_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP009426.1_2073183_2074635_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP009426.1_2074664_2075615_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP009426.1_2075629_2076046_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP009426.1_2076323_2076746_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_CP009426.1_2076794_2077097_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP009426.1_2077093_2077408_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP009426.1_2077407_2079141_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	9	2142882-2142986	4	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|157aa|up_9|NZ_CP009426.1_2131942_2132413_-,NA|136aa|up_1|NZ_CP009426.1_2139424_2139832_-,NA|127aa|down_7|NZ_CP009426.1_2157107_2157488_-	NA|157aa|up_9|NZ_CP009426.1_2131942_2132413_-	NA	NA|155aa|up_8|NZ_CP009426.1_2132752_2133217_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_7|NZ_CP009426.1_2133392_2135615_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_6|NZ_CP009426.1_2135652_2136096_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_5|NZ_CP009426.1_2136209_2136803_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_4|NZ_CP009426.1_2136885_2137491_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_3|NZ_CP009426.1_2137590_2138595_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_2|NZ_CP009426.1_2138694_2139447_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_1|NZ_CP009426.1_2139424_2139832_-	NA	NA|767aa|up_0|NZ_CP009426.1_2139966_2142267_+	PLN02892, PLN02892, isocitrate lyase	NA|421aa|down_0|NZ_CP009426.1_2145426_2146688_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|988aa|down_1|NZ_CP009426.1_2148206_2151170_-	pfam00823, PPE, PPE family	NA|155aa|down_2|NZ_CP009426.1_2151618_2152083_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_3|NZ_CP009426.1_2152180_2153044_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_4|NZ_CP009426.1_2153081_2154353_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_5|NZ_CP009426.1_2154624_2155740_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_6|NZ_CP009426.1_2155730_2157071_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_7|NZ_CP009426.1_2157107_2157488_-	NA	NA|621aa|down_8|NZ_CP009426.1_2157644_2159507_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_9|NZ_CP009426.1_2159514_2159994_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	10	2149372-2149591	5	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP009426.1_2139424_2139832_-,NA|127aa|down_5|NZ_CP009426.1_2157107_2157488_-	NA|155aa|up_9|NZ_CP009426.1_2132752_2133217_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP009426.1_2133392_2135615_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP009426.1_2135652_2136096_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP009426.1_2136209_2136803_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP009426.1_2136885_2137491_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP009426.1_2137590_2138595_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP009426.1_2138694_2139447_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP009426.1_2139424_2139832_-	NA	NA|767aa|up_1|NZ_CP009426.1_2139966_2142267_+	PLN02892, PLN02892, isocitrate lyase	NA|421aa|up_0|NZ_CP009426.1_2145426_2146688_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|155aa|down_0|NZ_CP009426.1_2151618_2152083_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP009426.1_2152180_2153044_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP009426.1_2153081_2154353_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP009426.1_2154624_2155740_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP009426.1_2155730_2157071_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP009426.1_2157107_2157488_-	NA	NA|621aa|down_6|NZ_CP009426.1_2157644_2159507_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP009426.1_2159514_2159994_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP009426.1_2160230_2161004_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP009426.1_2161007_2161775_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	11	3096414-3097561	2,6,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-D,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	13,14,15	15	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP009426.1_3089693_3089948_-,NA|135aa|up_7|NZ_CP009426.1_3090095_3090500_+,NA|64aa|up_6|NZ_CP009426.1_3090496_3090688_+,NA|86aa|up_4|NZ_CP009426.1_3092274_3092532_+,NA|104aa|up_3|NZ_CP009426.1_3092636_3092948_+,NA|203aa|up_2|NZ_CP009426.1_3093367_3093976_+,NA	NA|92aa|up_9|NZ_CP009426.1_3089242_3089518_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP009426.1_3089693_3089948_-	NA	NA|135aa|up_7|NZ_CP009426.1_3090095_3090500_+	NA	NA|64aa|up_6|NZ_CP009426.1_3090496_3090688_+	NA	NA|385aa|up_5|NZ_CP009426.1_3090886_3092041_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP009426.1_3092274_3092532_+	NA	NA|104aa|up_3|NZ_CP009426.1_3092636_3092948_+	NA	NA|203aa|up_2|NZ_CP009426.1_3093367_3093976_+	NA	NA|470aa|up_1|NZ_CP009426.1_3094046_3095456_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP009426.1_3095452_3096265_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP009426.1_3097592_3098854_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	csm3gr7|237aa|down_1|NZ_CP009426.1_3099217_3099928_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_2|NZ_CP009426.1_3099937_3100312_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_3|NZ_CP009426.1_3100308_3102747_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_4|NZ_CP009426.1_3102743_3103466_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_5|NZ_CP009426.1_3103865_3104411_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_6|NZ_CP009426.1_3104682_3105567_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|296aa|down_7|NZ_CP009426.1_3105569_3106457_-	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain	NA|182aa|down_8|NZ_CP009426.1_3106762_3107308_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|90aa|down_9|NZ_CP009426.1_3107304_3107574_-	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	12	3631298-3631416	7	CRISPRCasFinder	no	cas3	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Unclear	GCCCCTGTGAGTCGAGTGAGCGGAACGAAC	30	1	1	3631328-3631386	NZ_CP009426.1_3631391-3631449	NA	1	1	Unclear	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|138aa|down_6|NZ_CP009426.1_3637049_3637463_-,NA|126aa|down_7|NZ_CP009426.1_3637497_3637875_-	NA|719aa|up_9|NZ_CP009426.1_3618124_3620281_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|223aa|up_8|NZ_CP009426.1_3620277_3620946_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|395aa|up_7|NZ_CP009426.1_3621046_3622231_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|765aa|up_6|NZ_CP009426.1_3622235_3624530_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|390aa|up_5|NZ_CP009426.1_3624518_3625688_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|175aa|up_4|NZ_CP009426.1_3625712_3626237_-	PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase	NA|430aa|up_3|NZ_CP009426.1_3626233_3627523_-	TIGR01161, N5-carboxyaminoimidazole_ribonucleotide_synthase, phosphoribosylaminoimidazole carboxylase, PurK protein	NA|273aa|up_2|NZ_CP009426.1_3627476_3628295_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|173aa|up_1|NZ_CP009426.1_3628249_3628768_-	pfam03703, bPH_2, Bacterial PH domain	NA|267aa|up_0|NZ_CP009426.1_3628810_3629611_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|223aa|down_0|NZ_CP009426.1_3631682_3632351_+	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|298aa|down_1|NZ_CP009426.1_3632391_3633285_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|144aa|down_2|NZ_CP009426.1_3633281_3633713_+	COG2166, sufE, Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]	NA|601aa|down_3|NZ_CP009426.1_3633820_3635623_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|262aa|down_4|NZ_CP009426.1_3635632_3636418_-	PRK07122, PRK07122, RNA polymerase sigma factor SigF; Reviewed	NA|146aa|down_5|NZ_CP009426.1_3636414_3636852_-	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	NA|138aa|down_6|NZ_CP009426.1_3637049_3637463_-	NA	NA|126aa|down_7|NZ_CP009426.1_3637497_3637875_-	NA	NA|450aa|down_8|NZ_CP009426.1_3637908_3639258_-	PRK08297, PRK08297, L-lysine aminotransferase; Provisional	NA|151aa|down_9|NZ_CP009426.1_3639308_3639761_-	smart00344, HTH_ASNC, helix_turn_helix ASNC type
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	13	3820272-3820361	8	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|77aa|up_8|NZ_CP009426.1_3812308_3812539_+,NA|121aa|up_7|NZ_CP009426.1_3812642_3813005_-,NA|73aa|up_2|NZ_CP009426.1_3818337_3818556_-,NA|121aa|down_0|NZ_CP009426.1_3821346_3821709_-,NA|52aa|down_2|NZ_CP009426.1_3823550_3823706_-,NA|52aa|down_3|NZ_CP009426.1_3823730_3823886_-,NA|238aa|down_6|NZ_CP009426.1_3827882_3828596_-	NA|409aa|up_9|NZ_CP009426.1_3811122_3812349_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_8|NZ_CP009426.1_3812308_3812539_+	NA	NA|121aa|up_7|NZ_CP009426.1_3812642_3813005_-	NA	NA|177aa|up_6|NZ_CP009426.1_3813963_3814494_+	pfam00823, PPE, PPE family	NA|252aa|up_5|NZ_CP009426.1_3814811_3815567_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|295aa|up_4|NZ_CP009426.1_3815650_3816535_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|553aa|up_3|NZ_CP009426.1_3816686_3818345_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|73aa|up_2|NZ_CP009426.1_3818337_3818556_-	NA	NA|100aa|up_1|NZ_CP009426.1_3819050_3819350_+	pfam00934, PE, PE family	NA|181aa|up_0|NZ_CP009426.1_3819435_3819978_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|121aa|down_0|NZ_CP009426.1_3821346_3821709_-	NA	NA|179aa|down_1|NZ_CP009426.1_3821871_3822408_+	pfam00823, PPE, PPE family	NA|52aa|down_2|NZ_CP009426.1_3823550_3823706_-	NA	NA|52aa|down_3|NZ_CP009426.1_3823730_3823886_-	NA	NA|461aa|down_4|NZ_CP009426.1_3825078_3826461_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|461aa|down_5|NZ_CP009426.1_3826498_3827881_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|238aa|down_6|NZ_CP009426.1_3827882_3828596_-	NA	NA|285aa|down_7|NZ_CP009426.1_3828606_3829461_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_8|NZ_CP009426.1_3829682_3831557_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_9|NZ_CP009426.1_3831578_3832055_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	14	3918002-3918483	6	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCANCGNCGGCANCGGCGGCNCCGGCGGNNNCGGCGGC	38	1	3	3918277-3918301|3918277-3918301|3918277-3918301	NZ_CP009426.1_3911425-3911449|NZ_CP009426.1_3911770-3911794|NZ_CP009426.1_3912115-3912139	NA	6	6	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP009426.1_3921860_3922700_+	NA|64aa|up_9|NZ_CP009426.1_3895428_3895620_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_8|NZ_CP009426.1_3895834_3897037_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_7|NZ_CP009426.1_3897061_3898183_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_6|NZ_CP009426.1_3898253_3899762_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|516aa|up_5|NZ_CP009426.1_3907043_3908591_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_4|NZ_CP009426.1_3908587_3909424_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|126aa|up_3|NZ_CP009426.1_3911932_3912310_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|669aa|up_2|NZ_CP009426.1_3912343_3914350_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|297aa|up_1|NZ_CP009426.1_3914346_3915237_+	PHA03169, PHA03169, hypothetical protein; Provisional	NA|219aa|up_0|NZ_CP009426.1_3915365_3916022_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP009426.1_3919253_3920900_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP009426.1_3920973_3921765_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP009426.1_3921860_3922700_+	NA	NA|399aa|down_3|NZ_CP009426.1_3922754_3923951_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP009426.1_3923979_3924690_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP009426.1_3924754_3925798_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP009426.1_3925950_3926862_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP009426.1_3926877_3927942_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP009426.1_3927958_3929143_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP009426.1_3929184_3930216_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_000756525.1_ASM75652v1	NZ_CP009426	Mycobacterium tuberculosis strain 96075 chromosome, complete genome	15	4078461-4078549	9	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|233aa|up_0|NZ_CP009426.1_4077565_4078264_-,NA|126aa|down_6|NZ_CP009426.1_4083784_4084162_+	NA|267aa|up_9|NZ_CP009426.1_4063956_4064757_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|388aa|up_8|NZ_CP009426.1_4064753_4065917_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_7|NZ_CP009426.1_4065913_4066966_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_6|NZ_CP009426.1_4067464_4068328_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|549aa|up_5|NZ_CP009426.1_4069814_4071461_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_CP009426.1_4071457_4072321_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_CP009426.1_4072313_4073240_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_CP009426.1_4073241_4074867_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_CP009426.1_4075574_4077530_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP009426.1_4077565_4078264_-	NA	NA|173aa|down_0|NZ_CP009426.1_4078609_4079128_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP009426.1_4079128_4080112_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP009426.1_4080104_4081298_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP009426.1_4081303_4082125_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP009426.1_4082256_4082940_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP009426.1_4082939_4083677_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP009426.1_4083784_4084162_+	NA	NA|225aa|down_7|NZ_CP009426.1_4084260_4084935_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP009426.1_4085040_4085835_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP009426.1_4085841_4086297_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
