assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000756435.2_ASM75643v3	NZ_CP012413	Piscirickettsia salmonis strain PM15972A1 chromosome, complete genome	1	1349300-1349406	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|154aa|up_6|NZ_CP012413.1_1338117_1338579_+,NA|62aa|up_4|NZ_CP012413.1_1341514_1341700_+,NA|105aa|up_2|NZ_CP012413.1_1346396_1346711_-,NA|87aa|up_1|NZ_CP012413.1_1346968_1347229_+,NA|86aa|down_0|NZ_CP012413.1_1350110_1350368_+,NA|204aa|down_4|NZ_CP012413.1_1354365_1354977_+,NA|87aa|down_5|NZ_CP012413.1_1355161_1355422_+,NA|67aa|down_7|NZ_CP012413.1_1356971_1357172_-	NA|421aa|up_9|NZ_CP012413.1_1333511_1334774_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|602aa|up_8|NZ_CP012413.1_1334861_1336667_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|266aa|up_7|NZ_CP012413.1_1337150_1337948_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|154aa|up_6|NZ_CP012413.1_1338117_1338579_+	NA	NA|652aa|up_5|NZ_CP012413.1_1338877_1340833_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_4|NZ_CP012413.1_1341514_1341700_+	NA	NA|330aa|up_3|NZ_CP012413.1_1342033_1343023_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|105aa|up_2|NZ_CP012413.1_1346396_1346711_-	NA	NA|87aa|up_1|NZ_CP012413.1_1346968_1347229_+	NA	NA|163aa|up_0|NZ_CP012413.1_1347248_1347737_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|86aa|down_0|NZ_CP012413.1_1350110_1350368_+	NA	NA|336aa|down_1|NZ_CP012413.1_1350367_1351375_+	pfam00665, rve, Integrase core domain	NA|522aa|down_2|NZ_CP012413.1_1351399_1352965_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_3|NZ_CP012413.1_1353171_1353999_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_4|NZ_CP012413.1_1354365_1354977_+	NA	NA|87aa|down_5|NZ_CP012413.1_1355161_1355422_+	NA	NA|318aa|down_6|NZ_CP012413.1_1355595_1356549_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|67aa|down_7|NZ_CP012413.1_1356971_1357172_-	NA	NA|269aa|down_8|NZ_CP012413.1_1357546_1358353_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_9|NZ_CP012413.1_1358458_1359430_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_000756435.2_ASM75643v3	NZ_CP012413	Piscirickettsia salmonis strain PM15972A1 chromosome, complete genome	2	2545809-2545929	2	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|158aa|up_8|NZ_CP012413.1_2536921_2537395_-,NA|137aa|up_2|NZ_CP012413.1_2544287_2544698_+,NA|141aa|up_1|NZ_CP012413.1_2544941_2545364_-,NA|47aa|up_0|NZ_CP012413.1_2545396_2545537_+,NA	NA|461aa|up_9|NZ_CP012413.1_2535530_2536913_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|158aa|up_8|NZ_CP012413.1_2536921_2537395_-	NA	NA|420aa|up_7|NZ_CP012413.1_2537527_2538787_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_6|NZ_CP012413.1_2539242_2541324_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_5|NZ_CP012413.1_2541627_2542638_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|122aa|up_4|NZ_CP012413.1_2543070_2543436_+	pfam13384, HTH_23, Homeodomain-like domain	NA|192aa|up_3|NZ_CP012413.1_2543381_2543957_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|137aa|up_2|NZ_CP012413.1_2544287_2544698_+	NA	NA|141aa|up_1|NZ_CP012413.1_2544941_2545364_-	NA	NA|47aa|up_0|NZ_CP012413.1_2545396_2545537_+	NA	NA|296aa|down_0|NZ_CP012413.1_2547306_2548193_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|132aa|down_1|NZ_CP012413.1_2548876_2549272_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_2|NZ_CP012413.1_2549268_2550063_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_3|NZ_CP012413.1_2550241_2550967_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_4|NZ_CP012413.1_2551212_2552400_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|243aa|down_5|NZ_CP012413.1_2552731_2553460_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|228aa|down_6|NZ_CP012413.1_2553941_2554625_+	pfam02661, Fic, Fic/DOC family	NA|195aa|down_7|NZ_CP012413.1_2554628_2555213_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|243aa|down_8|NZ_CP012413.1_2555369_2556098_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|296aa|down_9|NZ_CP012413.1_2556483_2557370_+	pfam13358, DDE_3, DDE superfamily endonuclease
GCF_000756435.2_ASM75643v3	NZ_CP012413	Piscirickettsia salmonis strain PM15972A1 chromosome, complete genome	3	2710756-2710885	3	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	TTAAAAAATACAATAAAGAAAAACGATGCCTTCTCCTTACAGTTAT	46	1	38	2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839|2710802-2710839	NZ_CP012413.1_124622-124585|NZ_CP012413.1_127985-128022|NZ_CP012413.1_137739-137776|NZ_CP012413.1_335622-335659|NZ_CP012413.1_425754-425717|NZ_CP012413.1_512708-512671|NZ_CP012413.1_528736-528699|NZ_CP012413.1_646642-646605|NZ_CP012413.1_693188-693225|NZ_CP012413.1_750018-750055|NZ_CP012413.1_875178-875141|NZ_CP012413.1_891753-891790|NZ_CP012413.1_982614-982577|NZ_CP012413.1_1053095-1053058|NZ_CP012413.1_1093616-1093579|NZ_CP012413.1_1439913-1439876|NZ_CP012413.1_1488766-1488729|NZ_CP012413.1_1490843-1490880|NZ_CP012413.1_1522816-1522853|NZ_CP012413.1_1678221-1678258|NZ_CP012413.1_1702356-1702393|NZ_CP012413.1_1744208-1744245|NZ_CP012413.1_1940581-1940618|NZ_CP012413.1_2019789-2019752|NZ_CP012413.1_2189715-2189678|NZ_CP012413.1_2211860-2211823|NZ_CP012413.1_2277130-2277167|NZ_CP012413.1_2280430-2280393|NZ_CP012413.1_2543008-2543045|NZ_CP012413.1_2612762-2612799|NZ_CP012413.1_2774608-2774645|NZ_CP012413.1_2807359-2807322|NZ_CP012413.1_2838186-2838223|NZ_CP012413.1_2880396-2880433|NZ_CP012413.1_2885068-2885105|NZ_CP012413.1_3005441-3005404|NZ_CP012413.1_3015939-3015976|NZ_CP012413.1_2459491-2459528	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|192aa|up_4|NZ_CP012413.1_2706481_2707057_-,NA|282aa|up_3|NZ_CP012413.1_2707917_2708763_-,NA|99aa|up_2|NZ_CP012413.1_2708886_2709183_-,NA|233aa|up_1|NZ_CP012413.1_2709199_2709898_-,NA|97aa|up_0|NZ_CP012413.1_2709935_2710226_-,NA|105aa|down_1|NZ_CP012413.1_2711791_2712106_+,NA|65aa|down_5|NZ_CP012413.1_2715986_2716181_+,NA|414aa|down_8|NZ_CP012413.1_2720349_2721591_+	NA|123aa|up_9|NZ_CP012413.1_2701751_2702120_+	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_8|NZ_CP012413.1_2702237_2703023_-	TIGR03545, TIGR03545, TIGR03545 family protein	NA|315aa|up_7|NZ_CP012413.1_2703327_2704272_+	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|395aa|up_6|NZ_CP012413.1_2704290_2705475_-	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|278aa|up_5|NZ_CP012413.1_2705590_2706424_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|192aa|up_4|NZ_CP012413.1_2706481_2707057_-	NA	NA|282aa|up_3|NZ_CP012413.1_2707917_2708763_-	NA	NA|99aa|up_2|NZ_CP012413.1_2708886_2709183_-	NA	NA|233aa|up_1|NZ_CP012413.1_2709199_2709898_-	NA	NA|97aa|up_0|NZ_CP012413.1_2709935_2710226_-	NA	NA|192aa|down_0|NZ_CP012413.1_2711175_2711751_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|down_1|NZ_CP012413.1_2711791_2712106_+	NA	NA|192aa|down_2|NZ_CP012413.1_2712051_2712627_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|468aa|down_3|NZ_CP012413.1_2712677_2714081_-	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|353aa|down_4|NZ_CP012413.1_2714242_2715301_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|65aa|down_5|NZ_CP012413.1_2715986_2716181_+	NA	NA|329aa|down_6|NZ_CP012413.1_2716318_2717305_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|85aa|down_7|NZ_CP012413.1_2718027_2718282_-	PRK08116, PRK08116, hypothetical protein; Validated	NA|414aa|down_8|NZ_CP012413.1_2720349_2721591_+	NA	NA|97aa|down_9|NZ_CP012413.1_2721902_2722193_-	cd14742, PAAR_RHS, proline-alanine-alanine-arginine (PAAR) domain, also containing C-terminal Rearrangement hotspot (Rhs) extensions
