The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP008928	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ chromosome, complete genome	4678927	439362	449869	4678927		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126349.1|439362_440676_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565913.1|440702_441782_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
WP_000648783.1|441786_442560_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018223.1|442575_443550_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973709.1|443555_444107_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.3e-52
WP_000857535.1|444107_444986_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
WP_001023658.1|445033_445933_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
WP_000697848.1|445932_447018_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_000981469.1|447394_448288_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001144948.1|448465_449869_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	4.0e-21
>prophage 2
NZ_CP008928	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ chromosome, complete genome	4678927	517066	526237	4678927	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195340.1|517066_519100_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
WP_000703145.1|519340_519799_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	6.4e-53
WP_001197951.1|519970_520501_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950414.1|520557_521025_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	89.7	4.3e-73
WP_000598637.1|521071_521791_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272845.1|521787_523473_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	6.2e-279
WP_001240421.1|523695_524427_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.4	1.7e-100
WP_001261696.1|524486_524594_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|524574_525306_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569168.1|525289_526237_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	2.8e-10
>prophage 3
NZ_CP008928	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ chromosome, complete genome	4678927	762671	768731	4678927		Salmonella_virus(50.0%)	6	NA	NA
WP_000377779.1|762671_763613_+	membrane protein	NA	E7DYY8	Enterobacteria_phage	87.8	1.6e-146
WP_001576268.1|764855_765245_+	GtrA family protein	NA	A0A192Y6N5	Salmonella_phage	85.6	1.1e-50
WP_000703599.1|765213_765468_+	glycosyltransferase	NA	A8CG95	Salmonella_phage	79.5	3.1e-25
WP_000400616.1|765485_767408_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	77.3	5.6e-300
WP_105789228.1|768397_768541_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	82.9	1.7e-12
WP_108630384.1|768479_768731_-	hypothetical protein	NA	A0A1R3Y5S2	Salmonella_virus	68.6	7.6e-08
>prophage 4
NZ_CP008928	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ chromosome, complete genome	4678927	997811	1097757	4678927	lysis,portal,terminase,tail,tRNA,plate,head,transposase,integrase,capsid	Salmonella_phage(76.36%)	91	1016181:1016195	1096662:1096676
WP_000083345.1|997811_998549_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219174.1|998678_1000013_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_001675040.1|1000030_1000930_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000188410.1|1001032_1001620_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000627811.1|1001681_1002065_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000179978.1|1002383_1003073_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
WP_000997368.1|1003188_1004226_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_001098733.1|1004429_1004849_+	thioredoxin TrxC	NA	A0A1J0GW78	Streptomyces_phage	39.0	5.9e-13
WP_000183642.1|1004921_1005602_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_000082648.1|1005655_1008316_+	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_000949286.1|1008430_1009786_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001264473.1|1009830_1010154_+	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_000807815.1|1010150_1011452_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.6	1.8e-44
WP_000985655.1|1011555_1012011_-	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	49.3	3.9e-34
1016181:1016195	attL	TTTGAGTTCCCGGCC	NA	NA	NA	NA
WP_001235093.1|1017787_1020361_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.5	2.0e-127
WP_000992636.1|1020490_1021222_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|1021218_1022199_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197660.1|1022330_1023068_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|1023339_1023678_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|1023781_1023829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200077.1|1023928_1025089_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210984.1|1025049_1025958_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225188.1|1026015_1027137_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168062.1|1027146_1028217_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_001212379.1|1028656_1029175_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030985.1|1029167_1030388_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	36.2	5.8e-08
WP_000065257.1|1030544_1030892_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469804.1|1030932_1031700_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|1031744_1032293_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|1032311_1032560_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|1032812_1034174_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|1034339_1035131_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|1035150_1036437_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001287926.1|1036557_1037163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|1037197_1037788_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059151.1|1037911_1038790_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880965.1|1038875_1040537_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|1040685_1041024_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|1041189_1041480_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|1041469_1041946_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|1042095_1042578_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_001237694.1|1043192_1054667_+	biofilm-associated protein BapA	NA	NA	NA	NA	NA
WP_000533863.1|1054731_1056141_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196151.1|1056137_1058318_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_012543392.1|1058325_1059489_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000980500.1|1060040_1060259_-	hypothetical protein	NA	E5G6Q4	Salmonella_phage	100.0	2.1e-38
WP_001102269.1|1060327_1061428_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	100.0	2.6e-201
WP_000980411.1|1061424_1061910_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	100.0	6.7e-77
WP_001282768.1|1061906_1064714_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	99.9	0.0e+00
WP_000763316.1|1064706_1064826_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	100.0	1.8e-15
WP_001280963.1|1064840_1065143_-|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	100.0	1.5e-45
WP_001207651.1|1065197_1065713_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	100.0	9.3e-93
WP_000046108.1|1065722_1066895_-|tail	phage tail sheath protein	tail	E5G6P7	Salmonella_phage	100.0	8.9e-224
WP_000974843.1|1066997_1067222_-	helix-turn-helix domain-containing protein	NA	E5G6P5	Salmonella_phage	100.0	1.5e-34
WP_000143187.1|1068091_1068667_-|tail	tail fiber assembly protein	tail	E5G6P1	Salmonella_phage	100.0	4.3e-107
WP_001274649.1|1068666_1070520_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	100.0	0.0e+00
WP_001086804.1|1070516_1071122_-|tail	phage tail protein I	tail	E5G6N9	Salmonella_phage	100.0	1.3e-117
WP_000268332.1|1071114_1072023_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	100.0	5.4e-160
WP_000189373.1|1072009_1072369_-|plate	baseplate assembly protein	plate	E5G6N7	Salmonella_phage	100.0	1.1e-60
WP_001672413.1|1072365_1072944_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	100.0	1.4e-108
WP_000958562.1|1073021_1073873_+	hypothetical protein	NA	E5G6N5	Salmonella_phage	100.0	2.8e-163
WP_000343949.1|1073874_1074321_-	phage virion morphogenesis protein	NA	E5G6N4	Salmonella_phage	99.3	2.3e-71
WP_001039958.1|1074313_1074745_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	100.0	1.7e-76
WP_000196199.1|1074840_1075269_-|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	100.0	2.3e-68
WP_001069923.1|1075265_1075781_-	lysozyme	NA	E5G6N1	Salmonella_phage	100.0	5.3e-96
WP_000171565.1|1075761_1075977_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	100.0	5.9e-33
WP_000868184.1|1075980_1076184_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673537.1|1076183_1076648_-|head	head completion/stabilization protein	head	E5G6M8	Salmonella_phage	100.0	9.9e-86
WP_000059173.1|1076741_1077392_-|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	100.0	4.9e-115
WP_000730759.1|1077395_1078457_-|capsid	phage major capsid protein, P2 family	capsid	E5G6M6	Salmonella_phage	100.0	2.1e-195
WP_000216276.1|1078473_1079307_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	100.0	3.1e-130
WP_001098395.1|1079449_1081216_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	97.1	0.0e+00
WP_001542203.1|1081215_1082256_+|portal	phage portal protein	portal	E5G6M3	Salmonella_phage	100.0	5.5e-201
WP_001284991.1|1082359_1084024_-	AIPR family protein	NA	E5G6M2	Salmonella_phage	100.0	0.0e+00
WP_001673609.1|1084337_1085015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001217575.1|1085128_1085362_-	DinI family protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
WP_001154433.1|1085372_1085561_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	100.0	1.4e-27
WP_000017507.1|1085713_1088128_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	100.0	0.0e+00
WP_000104187.1|1088124_1088982_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	100.0	6.8e-165
WP_000752613.1|1088978_1089206_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	100.0	2.7e-36
WP_001244219.1|1089205_1089439_-	DUF2732 family protein	NA	E5G6L6	Salmonella_phage	100.0	1.7e-33
WP_000963474.1|1089506_1089848_-	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	100.0	1.2e-56
WP_000956190.1|1089811_1090012_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	100.0	2.4e-33
WP_000460848.1|1090019_1090529_-	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	100.0	1.5e-87
WP_000102105.1|1090562_1090805_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	97.5	6.8e-38
WP_000932273.1|1090926_1091559_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	51.4	6.3e-59
WP_000218402.1|1091561_1092578_+|integrase	site-specific integrase	integrase	E5G6L0	Salmonella_phage	100.0	5.0e-199
WP_000360326.1|1093130_1093793_+	hypothetical protein	NA	E5G6K9	Salmonella_phage	100.0	3.4e-124
WP_001142974.1|1094054_1094648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000445376.1|1095046_1095850_+	DUF3800 domain-containing protein	NA	Q19UP3	Mannheimia_phage	44.7	1.2e-62
WP_089113803.1|1096645_1097757_-|transposase	IS3-like element IS1351 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.6	7.6e-07
1096662:1096676	attR	TTTGAGTTCCCGGCC	NA	NA	NA	NA
>prophage 5
NZ_CP008928	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ chromosome, complete genome	4678927	3918094	3925407	4678927	integrase,protease	Dickeya_phage(16.67%)	7	3906832:3906846	3925625:3925639
3906832:3906846	attL	AGCCTGCGAGGAGAC	NA	NA	NA	NA
WP_001201751.1|3918094_3919213_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
WP_000125875.1|3919209_3921156_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
WP_000447499.1|3921285_3921507_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|3921830_3922151_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934064.1|3922181_3924458_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_001117984.1|3924670_3924868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001539594.1|3925029_3925407_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
3925625:3925639	attR	GTCTCCTCGCAGGCT	NA	NA	NA	NA
>prophage 6
NZ_CP008928	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ chromosome, complete genome	4678927	3975866	4037384	4678927	protease,tail,tRNA	Salmonella_phage(23.53%)	54	NA	NA
WP_001154025.1|3975866_3976670_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_001288828.1|3976662_3977985_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_000060025.1|3977965_3978670_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_000572746.1|3978669_3983136_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_000925870.1|3983480_3985331_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000357052.1|3985590_3986139_+	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_001109471.1|3986166_3986814_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000462653.1|3986875_3988066_-	aspartate transaminase	NA	NA	NA	NA	NA
WP_000977709.1|3988250_3989342_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	1.7e-99
WP_000117867.1|3989935_3991336_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	35.8	4.5e-81
WP_000762342.1|3991536_3991998_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000544855.1|3992315_3993530_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_000893200.1|3993775_3995212_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_000191404.1|3995289_3996492_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001676370.1|3996686_3997097_-	enterohemolysin	NA	H6WRX0	Salmonella_phage	100.0	5.0e-33
WP_000274547.1|3997117_3997747_+	hypothetical protein	NA	A0A0U2RJZ0	Escherichia_phage	65.9	1.6e-75
WP_000729406.1|3997730_3998357_+	hypothetical protein	NA	A0A0U2RK03	Escherichia_phage	71.6	3.3e-92
WP_000583382.1|3998353_4000063_+|tail	tail fiber protein	tail	A0A0U2SAV1	Escherichia_phage	66.0	1.5e-91
WP_000143167.1|4000062_4000644_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
WP_072100753.1|4000647_4000896_-|tail	phage tail protein	tail	A0A1B0VCD0	Salmonella_phage	66.2	2.1e-18
WP_001674638.1|4001121_4002090_+	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	99.4	3.0e-193
WP_000334547.1|4002737_4003364_-	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
WP_001525490.1|4003723_4004410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497441.1|4004680_4004872_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
WP_000193790.1|4005298_4007911_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	6.3e-20
WP_000291723.1|4008118_4009129_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001574119.1|4009294_4009837_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000224079.1|4009833_4010943_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_001086485.1|4011041_4013150_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000053044.1|4013162_4015070_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_000333139.1|4015084_4016338_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000433414.1|4016342_4017983_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000759136.1|4017979_4018543_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001537784.1|4018798_4018966_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000227928.1|4019065_4019584_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_000156448.1|4019652_4021413_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877172.1|4021598_4022051_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_001674965.1|4022122_4023175_-	porin OmpA	NA	NA	NA	NA	NA
WP_000288733.1|4023531_4024041_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001202375.1|4024257_4024863_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000950876.1|4024849_4027003_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261222.1|4027021_4027468_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_000420505.1|4027591_4029646_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
WP_000424187.1|4029681_4030140_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847719.1|4030234_4030897_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_001676378.1|4031070_4031484_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000561983.1|4031528_4031846_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000140478.1|4031903_4033115_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000859416.1|4033329_4033878_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000548080.1|4033903_4034683_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000072884.1|4034731_4035013_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904449.1|4035009_4035339_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000374046.1|4035425_4036085_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_000938186.1|4036703_4037384_-|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.0	2.2e-81
>prophage 7
NZ_CP008928	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ chromosome, complete genome	4678927	4177580	4235631	4678927	lysis,tail,tRNA,integrase,holin	Salmonella_phage(21.43%)	60	4220180:4220197	4232324:4232341
WP_000569035.1|4177580_4178552_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
WP_000019607.1|4178548_4179292_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	30.9	4.1e-25
WP_000252975.1|4179332_4179728_-	membrane protein	NA	NA	NA	NA	NA
WP_000639226.1|4179780_4180599_-	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	80.3	4.5e-57
WP_000916144.1|4180595_4181162_-	hydrolase	NA	NA	NA	NA	NA
WP_001258629.1|4181486_4183259_+|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000653693.1|4183361_4183814_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_000907242.1|4183843_4184584_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000022509.1|4184620_4185142_+	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	35.1	2.6e-10
WP_000716756.1|4185143_4185743_-	YebB family permuted papain-like enzyme	NA	NA	NA	NA	NA
WP_001676480.1|4185951_4186644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000580335.1|4187003_4187615_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_000568508.1|4187623_4188634_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	26.4	2.4e-07
WP_000571521.1|4188712_4189498_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA	NA
WP_000203023.1|4189494_4190250_-	zinc ABC transporter ATP-binding protein ZnuC	NA	G3M9Y6	Bacillus_virus	29.4	8.5e-18
WP_000939597.1|4190328_4191273_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
WP_001184028.1|4191288_4192608_+	murein DD-endopeptidase MepM	NA	A8ATH6	Listeria_phage	40.9	2.6e-14
WP_000448401.1|4192724_4193696_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
WP_000091156.1|4193768_4195211_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_001056720.1|4195334_4196204_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000301711.1|4196545_4198021_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.6e-79
WP_001069113.1|4198255_4200067_+	phosphogluconate dehydratase	NA	NA	NA	NA	NA
WP_000800494.1|4200104_4200746_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_000173418.1|4200845_4202024_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_000257723.1|4202154_4202445_+	DNA damage-inducible protein YebG	NA	NA	NA	NA	NA
WP_001042123.1|4202512_4202866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000024715.1|4202959_4203619_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_000936990.1|4203831_4205883_+	oligopeptidase B	NA	NA	NA	NA	NA
WP_000944288.1|4205919_4206618_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	40.4	2.8e-07
WP_000100257.1|4206641_4207298_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_000856224.1|4207405_4207636_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
WP_000168393.1|4207773_4208148_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_000979694.1|4208148_4209024_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000722370.1|4209040_4209394_+	YebY family protein	NA	NA	NA	NA	NA
WP_000087636.1|4209776_4210856_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	52.5	3.0e-101
WP_001575998.1|4210830_4211109_-	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	37.5	1.4e-10
WP_001237395.1|4211522_4213502_+	MBL fold metallo-hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	46.3	1.9e-162
WP_000972675.1|4214133_4214439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000940753.1|4214502_4215102_+	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.9	4.7e-96
WP_000784710.1|4215098_4215326_+	DNA breaking-rejoining protein	NA	A0A0M4RU10	Salmonella_phage	66.7	2.2e-14
WP_001097218.1|4215455_4216145_+	antitermination protein	NA	I6PDF8	Cronobacter_phage	54.9	2.1e-60
WP_001574213.1|4216241_4216766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798708.1|4217139_4217589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001574215.1|4217949_4218636_-	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	99.6	1.8e-131
WP_001574216.1|4218911_4219241_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_000984586.1|4219224_4219677_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
WP_001541990.1|4219694_4220174_+|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.0	1.4e-55
4220180:4220197	attL	TTAAAAAGGTACTCCCGG	NA	NA	NA	NA
WP_000877926.1|4221068_4221602_-	superoxide dismutase [Cu-Zn]	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
WP_001152416.1|4221691_4222387_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.0e-89
WP_072100756.1|4225027_4225891_+	DUF1983 domain-containing protein	NA	K7PKJ2	Enterobacteria_phage	78.9	9.0e-48
WP_000161704.1|4226441_4227164_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
WP_001536069.1|4227643_4228444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000622159.1|4229388_4229658_-|integrase	tyrosine-type recombinase/integrase	integrase	K7PHK0	Enterobacteria_phage	47.8	2.7e-11
WP_077681935.1|4230301_4230796_-	RecE	NA	A0A0U2I1R6	Escherichia_phage	70.3	3.7e-22
WP_001013467.1|4230985_4231216_+	hypothetical protein	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
WP_001050883.1|4231269_4231803_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	43.0	5.4e-11
WP_000789530.1|4232059_4232227_-	lytic enzyme	NA	NA	NA	NA	NA
WP_001576014.1|4232291_4232480_-	hypothetical protein	NA	NA	NA	NA	NA
4232324:4232341	attR	TTAAAAAGGTACTCCCGG	NA	NA	NA	NA
WP_000348541.1|4232534_4233026_+	DUF1441 family protein	NA	Q9EYD0	Enterobacteria_phage	56.2	7.1e-42
WP_001687735.1|4235130_4235631_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	77.4	1.5e-63
>prophage 8
NZ_CP008928	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ chromosome, complete genome	4678927	4450323	4466267	4678927	holin,tRNA	Escherichia_phage(62.5%)	21	NA	NA
WP_000123686.1|4450323_4451697_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.0	2.1e-51
WP_001156217.1|4451740_4452676_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	97.3	7.2e-144
WP_001676915.1|4452992_4453610_-	exodeoxyribonuclease	NA	A0A088CD28	Shigella_phage	41.9	2.5e-36
WP_000800272.1|4453637_4453955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000560208.1|4454039_4454261_-	cell division protein FtsZ	NA	A0A0U2RTC4	Escherichia_phage	83.6	7.9e-33
WP_000004762.1|4454698_4455220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085981757.1|4455327_4455483_-	DUF1391 family protein	NA	M4QQ57	Salicola_phage	48.9	2.6e-06
WP_001227859.1|4455867_4456335_-	helix-turn-helix domain-containing protein	NA	A0A0U2QW76	Escherichia_phage	66.9	1.0e-53
WP_001676916.1|4456607_4456937_+	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	51.7	6.5e-23
WP_001033796.1|4457098_4457653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000556389.1|4457649_4458582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000882662.1|4458951_4459164_+	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	95.7	2.5e-28
WP_000940751.1|4459687_4460287_+	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.9	5.5e-97
WP_000774470.1|4460286_4460577_+	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	76.0	5.1e-40
WP_000640113.1|4460573_4461110_+	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	70.9	1.4e-70
WP_000900605.1|4463280_4463676_+	tellurite resistance TerB family protein	NA	Q71TK7	Escherichia_phage	88.9	4.7e-44
WP_001688615.1|4463597_4463786_+	hypothetical protein	NA	Q8W636	Enterobacteria_phage	57.4	9.4e-11
WP_000445513.1|4463775_4464057_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	49.4	1.3e-16
WP_000802786.1|4464053_4464599_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	83.4	2.3e-89
WP_000159240.1|4465444_4465783_+	EamA family transporter	NA	NA	NA	NA	NA
WP_001082296.1|4465832_4466267_-	universal stress protein UspF	NA	A0A1W6JNV4	Morganella_phage	52.1	9.4e-30
>prophage 1
NZ_CP008927	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ plasmid unnamed, complete sequence	59372	0	1063	59372		Stx_converting_phage(100.0%)	2	NA	NA
WP_015059604.1|462_624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000751876.1|676_1063_-	YgiW/YdeI family stress tolerance OB fold protein	NA	A0A1I9LJU6	Stx_converting_phage	46.9	3.0e-27
>prophage 2
NZ_CP008927	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ plasmid unnamed, complete sequence	59372	10631	11189	59372		Enterobacteria_phage(100.0%)	1	NA	NA
WP_000725064.1|10631_11189_+	Ail/Lom family outer membrane beta-barrel protein	NA	Q9EV15	Enterobacteria_phage	37.4	5.8e-24
>prophage 3
NZ_CP008927	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ plasmid unnamed, complete sequence	59372	28373	35281	59372	transposase	Escherichia_phage(33.33%)	8	NA	NA
WP_000925628.1|28373_28796_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	52.4	2.0e-29
WP_000457542.1|28795_30070_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.5	3.9e-156
WP_000064277.1|30151_31126_-	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.5	5.1e-84
WP_000427676.1|31125_32331_-	ParA family protein	NA	A0A077SL49	Escherichia_phage	69.3	1.5e-162
WP_000728919.1|32745_33687_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	54.7	4.7e-74
WP_000176303.1|33683_34289_-	DUF2913 family protein	NA	NA	NA	NA	NA
WP_001527010.1|34345_34681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001541564.1|34864_35281_-	hypothetical protein	NA	O64348	Escherichia_phage	42.9	8.2e-07
>prophage 4
NZ_CP008927	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ plasmid unnamed, complete sequence	59372	38829	39390	59372		Ralstonia_phage(100.0%)	1	NA	NA
WP_001240330.1|38829_39390_+	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	43.2	1.5e-32
>prophage 5
NZ_CP008927	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ plasmid unnamed, complete sequence	59372	44896	45061	59372		Salmonella_phage(100.0%)	1	NA	NA
WP_001576629.1|44896_45061_+	glycoside hydrolase family protein	NA	A0A0M4R365	Salmonella_phage	63.0	3.3e-12
>prophage 6
NZ_CP008927	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ plasmid unnamed, complete sequence	59372	50003	50836	59372	transposase	Helicobacter_phage(50.0%)	2	NA	NA
WP_000064919.1|50003_50429_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	50.4	3.4e-24
WP_001541541.1|50485_50836_+	helix-turn-helix domain-containing protein	NA	A0A077SLN2	Escherichia_phage	80.5	1.9e-44
>prophage 7
NZ_CP008927	Salmonella enterica subsp. enterica serovar Enteritidis strain SEJ plasmid unnamed, complete sequence	59372	53896	54679	59372	integrase	Macacine_betaherpesvirus(100.0%)	1	50171:50182	56879:56890
50171:50182	attL	TATTTACCATCA	NA	NA	NA	NA
WP_000082169.1|53896_54679_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	91.1	1.6e-51
WP_000082169.1|53896_54679_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	91.1	1.6e-51
56879:56890	attR	TGATGGTAAATA	NA	NA	NA	NA
