The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_HG813242	Staphylococcus epidermidis PM221	2490012	32749	80860	2490012	transposase,protease	Streptococcus_phage(30.0%)	47	NA	NA
WP_000694291.1|32749_33583_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000998885.1|34268_35042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000432280.1|35279_35639_-	DUF4870 domain-containing protein	NA	NA	NA	NA	NA
WP_002499602.1|35803_36874_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_001052247.1|36886_37753_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000716034.1|37739_38930_-	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA	NA
WP_000671997.1|39874_40303_-	VOC family protein	NA	NA	NA	NA	NA
WP_038399394.1|40383_41313_+	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_038399395.1|41474_43484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002494449.1|43739_45419_+|transposase	IS1182-like element ISSep1 family transposase	transposase	A0ZS58	Staphylococcus_virus	77.6	1.1e-243
WP_135558899.1|45515_46694_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.2	5.7e-61
WP_002437509.1|47127_48237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002437511.1|48229_48601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002504708.1|48597_50241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002504707.1|50465_52142_+	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	29.6	7.3e-46
WP_000171557.1|52247_52586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001083108.1|52681_52993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000849085.1|53008_53515_+	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_002504705.1|53535_53982_+	RadC family protein	NA	NA	NA	NA	NA
WP_038399397.1|54349_55024_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	9.2e-125
WP_038399399.1|55330_55891_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_038399400.1|56199_56541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038399401.1|57452_58127_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	2.9e-126
WP_038399402.1|58164_58437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038399403.1|58714_59260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038399404.1|59806_60154_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	35.8	4.9e-13
WP_038399405.1|60172_60790_-	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_000475805.1|61118_61550_-	universal stress protein	NA	NA	NA	NA	NA
WP_002485360.1|62446_62710_-	replication initiation protein	NA	NA	NA	NA	NA
WP_002498809.1|64326_64539_-	DUF1958 domain-containing protein	NA	NA	NA	NA	NA
WP_000669688.1|65184_65352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038399406.1|65571_66363_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_002467663.1|66349_66550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002467629.1|66773_66932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038399407.1|66954_67560_-	ATP-binding cassette domain-containing protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	29.4	6.6e-13
WP_002494531.1|67565_68513_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_002467670.1|68505_69336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002494532.1|69319_70360_-	SPASM domain-containing protein	NA	NA	NA	NA	NA
WP_038399408.1|70356_71568_-	radical SAM protein	NA	NA	NA	NA	NA
WP_002469405.1|71739_72645_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.4	4.7e-23
WP_038399409.1|72619_73741_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002498806.1|73706_74318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002455935.1|74398_75064_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.9	4.8e-25
WP_038399410.1|75051_76143_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002469141.1|77000_78362_+	SLC45 family MFS transporter	NA	NA	NA	NA	NA
WP_002488995.1|78902_79388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104992782.1|79681_80860_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.2	9.7e-61
>prophage 2
NZ_HG813242	Staphylococcus epidermidis PM221	2490012	414321	424197	2490012	transposase	Hokovirus(12.5%)	12	NA	NA
WP_025987135.1|414321_415374_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.6	2.0e-17
WP_001830352.1|415376_416066_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	3.4e-34
WP_001830332.1|416040_416514_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001830329.1|416564_417002_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_104992782.1|417748_418927_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.2	9.7e-61
WP_002485887.1|419156_419312_-	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	77.6	4.4e-14
WP_001830331.1|419661_420261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001830330.1|420362_421076_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	44.8	1.6e-55
WP_001830341.1|421076_421496_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_002494318.1|421500_422172_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	52.4	2.3e-59
WP_001830349.1|422468_423056_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001830323.1|423045_424197_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	39.6	7.5e-26
>prophage 3
NZ_HG813242	Staphylococcus epidermidis PM221	2490012	445620	456054	2490012		uncultured_Caudovirales_phage(62.5%)	9	NA	NA
WP_002438897.1|445620_447126_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.0	5.5e-61
WP_001832596.1|447409_447910_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	1.1e-50
WP_001829684.1|447923_448799_-	DMT family transporter	NA	NA	NA	NA	NA
WP_001829589.1|449553_449952_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	100.0	2.0e-71
WP_001829582.1|449914_452020_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	100.0	0.0e+00
WP_001829597.1|452138_453107_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	100.0	3.9e-185
WP_002438902.1|453359_454334_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	99.7	5.9e-165
WP_002495257.1|454360_455278_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	100.0	2.1e-10
WP_001829596.1|455274_456054_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.6	5.1e-18
>prophage 4
NZ_HG813242	Staphylococcus epidermidis PM221	2490012	539205	601755	2490012	integrase,head,terminase,plate,portal,holin,transposase,tail,capsid,protease	uncultured_Caudovirales_phage(80.6%)	83	533098:533118	596235:596255
533098:533118	attL	AAACGTTTTGTGAAAGATGAT	NA	NA	NA	NA
WP_002438997.1|539205_540447_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.0	4.1e-110
WP_001831954.1|540436_540901_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_002468153.1|541106_542504_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_002468148.1|542571_543621_-|integrase	site-specific integrase	integrase	A0A2H4JBZ8	uncultured_Caudovirales_phage	99.7	5.5e-201
WP_038399439.1|543835_544993_-	CapA family protein	NA	A0A2H4JC87	uncultured_Caudovirales_phage	98.2	1.4e-218
WP_171049624.1|544996_545164_-	hypothetical protein	NA	A0A2H4JA13	uncultured_Caudovirales_phage	98.2	3.9e-24
WP_038399440.1|545207_545819_-	helix-turn-helix domain-containing protein	NA	A0A2H4JCV3	uncultured_Caudovirales_phage	99.0	6.4e-109
WP_038399441.1|545990_546203_+	hypothetical protein	NA	A0A1Q1PVU3	Staphylococcus_phage	95.7	3.9e-29
WP_171049625.1|546245_546386_+	hypothetical protein	NA	A0A2H4JB78	uncultured_Caudovirales_phage	97.8	8.5e-17
WP_038399442.1|546378_546597_-	hypothetical protein	NA	A0A2H4JDC2	uncultured_Caudovirales_phage	94.6	6.6e-32
WP_038399443.1|546645_547527_+	DUF3102 domain-containing protein	NA	A0A2H4J4L1	uncultured_Caudovirales_phage	68.7	3.7e-73
WP_172643074.1|547537_547714_+	hypothetical protein	NA	A0A2H4JDI7	uncultured_Caudovirales_phage	97.3	1.6e-12
WP_038399444.1|547814_548303_+	ORF6C domain-containing protein	NA	A0A2H4J854	uncultured_Caudovirales_phage	92.6	5.6e-71
WP_002468183.1|548411_548615_-	hypothetical protein	NA	A0A2H4J4K0	uncultured_Caudovirales_phage	100.0	4.8e-29
WP_002468180.1|548723_548939_+	hypothetical protein	NA	A0A2H4J149	uncultured_Caudovirales_phage	95.8	1.5e-28
WP_002498317.1|548935_549118_+	hypothetical protein	NA	A0A2H4JC97	uncultured_Caudovirales_phage	96.7	1.2e-23
WP_002468154.1|549183_549447_+	hypothetical protein	NA	A0A2H4JA24	uncultured_Caudovirales_phage	97.1	1.1e-33
WP_002468176.1|549430_549916_+	siphovirus Gp157 family protein	NA	A0A2H4JCW3	uncultured_Caudovirales_phage	95.7	8.8e-77
WP_002468156.1|549916_550693_+	ATP-binding protein	NA	Q8SDW5	Staphylococcus_phage	88.0	6.7e-127
WP_038399445.1|550721_551276_+	single-stranded DNA-binding protein	NA	A0A0H3U303	Staphylococcus_phage	85.3	2.6e-88
WP_002468164.1|551974_552457_-	hypothetical protein	NA	A0A2H4JC39	uncultured_Caudovirales_phage	100.0	2.5e-84
WP_002468137.1|552500_553274_+	conserved phage C-terminal domain-containing protein	NA	A0A2H4JEZ8	uncultured_Caudovirales_phage	100.0	4.7e-141
WP_038399446.1|553286_554057_+	ATP-binding protein	NA	A0A2H4JC46	uncultured_Caudovirales_phage	99.6	1.1e-142
WP_002468163.1|554050_554212_+	hypothetical protein	NA	A0A2H4JI18	uncultured_Caudovirales_phage	94.3	6.6e-21
WP_002468151.1|554211_554457_+	hypothetical protein	NA	A0A141VTS2	Staphylococcus_phage	96.3	8.2e-39
WP_002468165.1|554465_554873_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A2H4JCD7	uncultured_Caudovirales_phage	100.0	2.9e-73
WP_002468127.1|554873_555071_+	hypothetical protein	NA	A0A2H4JHY7	uncultured_Caudovirales_phage	100.0	7.3e-30
WP_002468115.1|555071_555431_+	hypothetical protein	NA	A0A2H4JDR1	uncultured_Caudovirales_phage	100.0	1.3e-61
WP_002468121.1|555427_555880_+	DUF3310 domain-containing protein	NA	A0A2H4JC33	uncultured_Caudovirales_phage	100.0	1.6e-80
WP_002468135.1|555869_556070_+	hypothetical protein	NA	A0A2H4JHF0	uncultured_Caudovirales_phage	100.0	7.4e-30
WP_038399575.1|556087_556348_-	hypothetical protein	NA	A0A2H4JG55	uncultured_Caudovirales_phage	98.8	2.9e-42
WP_002468111.1|556461_556884_+	dUTP diphosphatase	NA	A0A2H4JHY2	uncultured_Caudovirales_phage	100.0	3.2e-75
WP_002498306.1|557003_557306_-	hypothetical protein	NA	A0A2H4J741	uncultured_Caudovirales_phage	69.0	1.6e-31
WP_002468120.1|557410_557551_+	hypothetical protein	NA	A0A2H4JDQ4	uncultured_Caudovirales_phage	100.0	2.9e-17
WP_002468131.1|557593_557743_+	DUF1514 domain-containing protein	NA	A0A2H4J8R9	uncultured_Caudovirales_phage	97.9	5.9e-16
WP_002468152.1|557759_558206_+	transcriptional regulator	NA	A0A2H4JC78	uncultured_Caudovirales_phage	100.0	3.7e-82
WP_032601667.1|558689_559040_+	HNH endonuclease	NA	A0A2H4JI70	uncultured_Caudovirales_phage	100.0	6.8e-63
WP_038399447.1|559182_559653_+|terminase	phage terminase small subunit P27 family	terminase	A0A2H4J985	uncultured_Caudovirales_phage	98.1	8.8e-82
WP_038399448.1|559645_561397_+|terminase	terminase large subunit	terminase	H9A111	Staphylococcus_phage	97.9	0.0e+00
WP_002500102.1|561408_561603_+	hypothetical protein	NA	A0A2H4J9T6	uncultured_Caudovirales_phage	100.0	5.3e-25
WP_038399449.1|561605_562838_+|portal	phage portal protein	portal	A0A2H4JDG3	uncultured_Caudovirales_phage	98.0	6.7e-230
WP_038399450.1|562827_563385_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JDE6	uncultured_Caudovirales_phage	95.7	1.6e-98
WP_038399451.1|563426_564785_+|capsid	phage major capsid protein	capsid	A0A2H4J4F8	uncultured_Caudovirales_phage	91.8	3.5e-179
WP_002456400.1|564803_565145_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JB77	uncultured_Caudovirales_phage	95.6	3.9e-55
WP_002456401.1|565134_565464_+	hypothetical protein	NA	A0A2H4J9E0	uncultured_Caudovirales_phage	98.2	4.0e-57
WP_038399452.1|565460_565865_+	hypothetical protein	NA	A0A2H4J3L8	uncultured_Caudovirales_phage	94.0	7.6e-66
WP_002485830.1|565869_566274_+	hypothetical protein	NA	A0A2H4JEG7	uncultured_Caudovirales_phage	98.5	3.5e-71
WP_002485825.1|566286_566916_+|tail	phage tail protein	tail	A0A2H4JBK5	uncultured_Caudovirales_phage	96.2	4.6e-110
WP_002456405.1|566934_567120_+	hypothetical protein	NA	A0A2H4J420	uncultured_Caudovirales_phage	98.4	1.3e-25
WP_002485828.1|567190_567553_+	hypothetical protein	NA	A0A2H4J4J1	uncultured_Caudovirales_phage	98.3	1.2e-59
WP_154224849.1|567585_567738_+	hypothetical protein	NA	H9A123	Staphylococcus_phage	98.0	5.2e-20
WP_038399453.1|567766_572527_+|tail	phage tail tape measure protein	tail	A0A2H4JBT3	uncultured_Caudovirales_phage	96.5	0.0e+00
WP_002468177.1|572528_573362_+|tail	phage tail family protein	tail	A0A2H4J498	uncultured_Caudovirales_phage	100.0	2.8e-163
WP_172643075.1|573371_574931_+|tail	phage tail protein	tail	H9A128	Staphylococcus_phage	98.1	5.5e-298
WP_002504159.1|574923_575097_+	hypothetical protein	NA	A0A2H4J3L2	uncultured_Caudovirales_phage	100.0	5.2e-24
WP_038399455.1|575112_576975_+	DUF2817 domain-containing protein	NA	A0A2H4J3L1	uncultured_Caudovirales_phage	99.0	0.0e+00
WP_038399456.1|576974_578189_+|plate	BppU family phage baseplate upper protein	plate	A0A2H4JBZ7	uncultured_Caudovirales_phage	99.0	2.1e-207
WP_038399576.1|578193_578817_+	poly-gamma-glutamate hydrolase family protein	NA	A0A2H4JC07	uncultured_Caudovirales_phage	100.0	2.5e-116
WP_002497615.1|578813_579239_+	hypothetical protein	NA	A0A2H4J427	uncultured_Caudovirales_phage	100.0	1.0e-73
WP_038399457.1|579225_579633_+	hypothetical protein	NA	A0A2H4JEX3	uncultured_Caudovirales_phage	100.0	8.7e-70
WP_038399458.1|579790_580189_+	YxeA family protein	NA	A0A2H4JEL3	uncultured_Caudovirales_phage	81.1	3.2e-48
WP_002468157.1|580252_580663_+|holin	phage holin	holin	A0A2H4JI56	uncultured_Caudovirales_phage	99.3	7.0e-67
WP_038399459.1|580637_582101_+	SH3 domain-containing protein	NA	A0A2H4JC36	uncultured_Caudovirales_phage	99.6	1.4e-298
WP_002468147.1|583099_583279_+	hypothetical protein	NA	A0A2H4JHW3	uncultured_Caudovirales_phage	100.0	7.5e-26
WP_001831994.1|583941_584088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002495357.1|584078_584432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002439013.1|584934_585960_+	DUF21 domain-containing protein	NA	NA	NA	NA	NA
WP_001831962.1|586326_587175_+	DUF72 domain-containing protein	NA	A0A1D6Y809	Golden_Marseillevirus	25.9	5.4e-13
WP_002456119.1|587187_588015_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_002439019.1|588100_589420_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_001831979.1|589508_590423_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_001831895.1|590609_590999_+	DUF1027 domain-containing protein	NA	NA	NA	NA	NA
WP_002439025.1|591058_591325_-	DUF3055 domain-containing protein	NA	NA	NA	NA	NA
WP_001831932.1|591443_591878_+	DUF86 domain-containing protein	NA	NA	NA	NA	NA
WP_001831998.1|591877_592657_+	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA	NA
WP_002439032.1|592698_593670_+	D-glycerate dehydrogenase	NA	NA	NA	NA	NA
WP_001831913.1|594075_594222_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_001831977.1|594237_595695_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	27.5	2.1e-41
WP_002439035.1|595691_596906_+	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	28.0	4.5e-21
596235:596255	attR	AAACGTTTTGTGAAAGATGAT	NA	NA	NA	NA
WP_001831996.1|596923_597160_+	D-alanine--poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
WP_001831904.1|597156_598395_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_104832450.1|598800_599979_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.2	5.7e-61
WP_002494449.1|600075_601755_-|transposase	IS1182-like element ISSep1 family transposase	transposase	A0ZS58	Staphylococcus_virus	77.6	1.1e-243
>prophage 5
NZ_HG813242	Staphylococcus epidermidis PM221	2490012	735455	743925	2490012		Synechococcus_phage(33.33%)	9	NA	NA
WP_001831735.1|735455_735938_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.3	5.2e-21
WP_038399470.1|735924_737052_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001831723.1|737052_737757_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	42.5	1.6e-47
WP_001831728.1|737756_738017_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_001831727.1|738018_738690_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_002494325.1|738682_740872_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.4	1.1e-139
WP_001831721.1|740850_742335_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.9	9.4e-45
WP_001831685.1|742327_743359_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.4	2.1e-64
WP_001831672.1|743358_743925_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.0	6.1e-29
>prophage 6
NZ_HG813242	Staphylococcus epidermidis PM221	2490012	964048	1016845	2490012	integrase,head,terminase,plate,holin,tRNA,tail,capsid,portal	Staphylococcus_phage(55.56%)	60	984306:984365	1017033:1017097
WP_002439565.1|964048_965593_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_002439569.1|965594_965960_+	YlbF family regulator	NA	NA	NA	NA	NA
WP_001829480.1|965983_966478_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
WP_002456219.1|966675_969297_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.3	2.9e-41
WP_002439573.1|969311_971249_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.6	1.1e-61
WP_002439577.1|971262_971796_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_001829504.1|972170_972995_+	aquaporin family protein	NA	NA	NA	NA	NA
WP_002439580.1|973148_974648_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_002439581.1|974824_976498_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_001832556.1|976721_977648_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002494415.1|977659_978658_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_001829517.1|978611_978851_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_001829502.1|979072_979549_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	43.0	6.9e-26
WP_002439586.1|979649_980900_+	GTPase HflX	NA	NA	NA	NA	NA
WP_001829506.1|980915_982154_+	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_001829488.1|982634_983000_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001829492.1|983018_984359_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
984306:984365	attL	TATAGAACTCAAGTATCCGAATGGGAAAGAGAACAGTATATTAAGCAATACTAAGCGCTA	NA	NA	NA	NA
WP_002494413.1|984587_985715_-|integrase	site-specific integrase	integrase	Q6A1Z6	Oenococcus_phage	30.2	1.8e-27
WP_002476027.1|985767_986460_-	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	53.5	3.7e-12
WP_002494412.1|986471_986846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002475322.1|986995_987340_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JCV3	uncultured_Caudovirales_phage	58.6	1.1e-25
WP_002475333.1|987511_987751_+	hypothetical protein	NA	A0A1Q1PVU3	Staphylococcus_phage	58.7	1.9e-16
WP_002494410.1|987754_987946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002475323.1|988074_988254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032604716.1|988304_988583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002493719.1|988599_988794_+	DUF1270 family protein	NA	NA	NA	NA	NA
WP_002494406.1|988849_989116_+	hypothetical protein	NA	A0A2H4JAK6	uncultured_Caudovirales_phage	57.5	2.3e-18
WP_002494405.1|989120_989660_+	host-nuclease inhibitor Gam family protein	NA	A0A0H3U480	Staphylococcus_phage	68.5	2.6e-61
WP_002494404.1|990456_990960_+	DUF669 domain-containing protein	NA	A9CR64	Staphylococcus_phage	59.9	8.9e-56
WP_002494403.1|990985_991927_+	DnaD domain protein	NA	A0A2I6PDG7	Staphylococcus_phage	52.3	1.6e-53
WP_002475332.1|992361_992547_+	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	76.7	9.2e-19
WP_002494402.1|992653_993178_+	dUTP pyrophosphatase	NA	A9CR88	Staphylococcus_phage	70.2	8.1e-60
WP_002494974.1|993184_993424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002476004.1|993465_993969_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_002494401.1|994315_994510_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	66.7	4.1e-17
WP_002494400.1|994719_995148_+|terminase	terminase small subunit	terminase	H9A0M8	Staphylococcus_phage	65.2	3.4e-40
WP_002476011.1|995134_996409_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	73.3	1.4e-190
WP_002494399.1|996423_997866_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	67.7	1.4e-183
WP_038399480.1|997858_999238_+|capsid	minor capsid protein	capsid	A0A1J0MFV1	Staphylococcus_phage	58.2	2.6e-113
WP_002502928.1|999257_999497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002494396.1|999658_1000255_+	DUF4355 domain-containing protein	NA	A0A1J0MFB3	Staphylococcus_phage	44.7	1.8e-15
WP_002476012.1|1000275_1001169_+	hypothetical protein	NA	H9A0N3	Staphylococcus_phage	58.8	2.4e-88
WP_002476013.1|1001266_1001593_+|head,tail	phage head-tail connector protein	head,tail	Q4ZE31	Staphylococcus_virus	57.3	1.5e-27
WP_002494395.1|1001592_1001916_+	hypothetical protein	NA	A0A1J0MF86	Staphylococcus_phage	39.4	3.2e-14
WP_002494394.1|1001896_1002247_+	HK97 gp10 family phage protein	NA	A0A1J0MFN9	Staphylococcus_phage	64.7	4.9e-37
WP_002494393.1|1002259_1002649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002494392.1|1002664_1003255_+|tail	phage major tail protein, TP901-1 family	tail	H9A0N8	Staphylococcus_phage	59.4	3.0e-34
WP_002494391.1|1003315_1003660_+	hypothetical protein	NA	A0A1J0MFH0	Staphylococcus_phage	61.9	4.1e-36
WP_032604719.1|1003719_1004073_+	hypothetical protein	NA	Q4ZE25	Staphylococcus_virus	63.5	9.7e-33
WP_038399481.1|1004085_1007067_+	membrane protein	NA	Q4ZE24	Staphylococcus_virus	46.9	1.6e-80
WP_002494387.1|1007081_1008017_+|tail	phage tail family protein	tail	A0A1J0MF79	Staphylococcus_phage	54.0	6.4e-100
WP_002494386.1|1008025_1009411_+	hypothetical protein	NA	Q4ZE19	Staphylococcus_virus	50.6	3.6e-123
WP_002494385.1|1009415_1010108_+	hypothetical protein	NA	A0A1J0MFD6	Staphylococcus_phage	83.5	6.9e-83
WP_002494384.1|1010119_1011133_+	SGNH/GDSL hydrolase family protein	NA	Q8LTH0	Staphylococcus_virus	54.9	8.2e-101
WP_002494978.1|1011149_1012427_+|plate	phage baseplate upper protein	plate	Q4ZE15	Staphylococcus_virus	51.3	1.2e-120
WP_002494383.1|1012439_1012835_+|holin	phage holin family protein	holin	D7RWK5	Brochothrix_phage	43.8	3.0e-14
WP_002494382.1|1012885_1013812_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JNM6	Staphylococcus_phage	54.0	9.9e-61
WP_002494380.1|1015104_1015725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002474886.1|1016062_1016209_+	hypothetical protein	NA	A0A2H4PQP6	Staphylococcus_phage	76.6	3.3e-11
WP_002474889.1|1016653_1016845_+	hypothetical protein	NA	M9NSU5	Staphylococcus_phage	52.5	1.8e-09
1017033:1017097	attR	TATAGAACTCAAGTATCCGAATGGGAAAGAGAACAGTATATTAAGCAATACTAAGCGCTAAACAA	NA	NA	NA	NA
>prophage 7
NZ_HG813242	Staphylococcus epidermidis PM221	2490012	1489304	1537344	2490012	integrase,transposase,tRNA	Staphylococcus_phage(81.82%)	38	1480537:1480553	1540152:1540168
1480537:1480553	attL	TACTCATTAAGCTCAAT	NA	NA	NA	NA
WP_038399505.1|1489304_1500383_-	YSIRK signal domain/LPXTG anchor domain surface protein	NA	A0A2H4PQU6	Staphylococcus_phage	29.3	7.0e-28
WP_001830891.1|1500787_1501099_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	71.8	4.1e-35
WP_001830785.1|1501124_1503542_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.4	0.0e+00
WP_038399506.1|1503830_1505045_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	83.5	3.0e-182
WP_002485800.1|1505151_1506105_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.7	3.3e-67
WP_001830894.1|1506101_1506665_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	66.5	1.9e-67
WP_135558899.1|1506837_1508016_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.2	5.7e-61
WP_001830809.1|1508461_1508863_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038399507.1|1510425_1511478_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	70.3	1.6e-131
WP_002456446.1|1511496_1511958_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.2	1.2e-59
WP_002502922.1|1511970_1513152_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	75.8	3.3e-178
WP_002494783.1|1513164_1513797_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	77.6	1.4e-87
WP_002494782.1|1513803_1514847_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	66.8	8.9e-135
WP_002484471.1|1515282_1516767_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	65.6	2.5e-13
WP_001830727.1|1517114_1517966_-	glucosaminidase domain-containing protein	NA	A0A1J0MFB0	Staphylococcus_phage	35.6	1.0e-32
WP_002456441.1|1518343_1518559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002484457.1|1518766_1519246_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	42.9	9.1e-26
WP_001830734.1|1519251_1519695_+	competence protein ComK	NA	NA	NA	NA	NA
WP_002467846.1|1519681_1520125_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.5	4.1e-20
WP_002495070.1|1520264_1520978_-	transaldolase	NA	M1PR54	Cyanophage	37.4	7.0e-22
WP_002446728.1|1521254_1521563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001830726.1|1521601_1521967_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	57.0	4.1e-34
WP_001830729.1|1521963_1522317_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	32.5	8.5e-05
WP_002469577.1|1522643_1522799_-	hypothetical protein	NA	A0A146ICT8	Staphylococcus_phage	79.6	5.2e-15
WP_001829832.1|1523083_1523920_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	73.3	1.0e-120
WP_001829840.1|1524099_1525008_-	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	80.2	1.5e-101
WP_001829830.1|1525110_1526310_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.4	4.1e-192
WP_001832979.1|1526679_1528272_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	83.2	2.7e-268
WP_002456431.1|1528502_1529288_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.3	2.0e-99
WP_002456430.1|1529274_1529742_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	57.4	5.5e-44
WP_002457867.1|1529812_1530061_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	83.1	6.5e-36
WP_001829851.1|1530057_1531059_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	50.2	6.9e-92
WP_002456429.1|1531048_1532473_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	63.9	6.6e-173
WP_002456427.1|1533723_1534389_+	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	41.8	7.0e-08
WP_002456426.1|1534550_1534838_+	hypothetical protein	NA	A0A2H4JGN1	uncultured_Caudovirales_phage	50.0	5.5e-18
WP_002456424.1|1535364_1536099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002456423.1|1536478_1536691_-	hypothetical protein	NA	A0A2H4JCA1	uncultured_Caudovirales_phage	72.9	7.3e-20
WP_002456422.1|1536849_1537344_+|integrase	site-specific integrase	integrase	B7T092	Staphylococcus_virus	76.1	3.8e-67
1540152:1540168	attR	TACTCATTAAGCTCAAT	NA	NA	NA	NA
>prophage 8
NZ_HG813242	Staphylococcus epidermidis PM221	2490012	1668368	1682378	2490012	integrase,terminase	uncultured_Caudovirales_phage(70.0%)	21	1663035:1663053	1680418:1680436
1663035:1663053	attL	TTTACATCATACCTGGCAT	NA	NA	NA	NA
WP_002494633.1|1668368_1668554_-	hypothetical protein	NA	A0A2H4JBF3	uncultured_Caudovirales_phage	88.5	1.8e-22
WP_002494634.1|1668623_1668950_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4JB14	uncultured_Caudovirales_phage	95.4	5.9e-53
WP_002470295.1|1668946_1669264_-	hypothetical protein	NA	A0A2H4JEA5	uncultured_Caudovirales_phage	93.3	3.0e-49
WP_002470316.1|1669260_1669794_-	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	92.7	4.9e-89
WP_002470314.1|1669854_1670328_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JB21	uncultured_Caudovirales_phage	95.5	1.2e-78
WP_002494635.1|1671743_1672202_-	hypothetical protein	NA	A0A2H4JGU4	uncultured_Caudovirales_phage	96.7	1.6e-75
WP_002470304.1|1672214_1672835_-	hypothetical protein	NA	A0A2H4JFF8	uncultured_Caudovirales_phage	92.2	1.6e-102
WP_002488991.1|1673102_1673276_-	hypothetical protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	94.7	6.8e-24
WP_038399514.1|1673674_1675942_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	74.9	0.0e+00
WP_002470335.1|1676041_1676332_-	DUF1474 family protein	NA	A0A1W6JPG5	Staphylococcus_phage	68.0	6.9e-29
WP_002470311.1|1676343_1676550_-	hypothetical protein	NA	A0A2H4JHP9	uncultured_Caudovirales_phage	97.1	1.4e-28
WP_002470318.1|1676560_1676899_-	hypothetical protein	NA	A0A1W6JPD3	Staphylococcus_phage	50.9	4.8e-21
WP_002470303.1|1676900_1677104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002470330.1|1677107_1677251_-	hypothetical protein	NA	A0A2H4JB03	uncultured_Caudovirales_phage	91.5	1.3e-12
WP_002470305.1|1677243_1677564_-	excisionase family DNA-binding protein	NA	A0A2H4JE99	uncultured_Caudovirales_phage	94.3	3.9e-49
WP_002470327.1|1677577_1678219_-	phage repressor protein	NA	A0A2H4JB17	uncultured_Caudovirales_phage	90.6	2.4e-106
WP_002470299.1|1678222_1678441_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JPB7	Staphylococcus_phage	86.1	3.0e-24
WP_002470325.1|1678638_1679166_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JPB6	Staphylococcus_phage	93.7	1.1e-83
WP_002494637.1|1679174_1680350_+|integrase	site-specific integrase	integrase	A0A2H4JFF0	uncultured_Caudovirales_phage	97.4	3.6e-217
WP_002447508.1|1680418_1682038_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.2	1.5e-157
1680418:1680436	attR	TTTACATCATACCTGGCAT	NA	NA	NA	NA
WP_001830378.1|1682093_1682378_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	43.0	1.5e-12
