assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000750315.1_ASM75031v1	NZ_CP008943	Yersinia pseudotuberculosis strain ATCC 6904 chromosome, complete genome	1	684700-686168	1,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	DEDDh	DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC	28,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F	24,24,23,23	24	Orphan	DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA|16aa|down_6|NZ_CP008943.1_694472_694520_+	NA|382aa|up_9|NZ_CP008943.1_670107_671253_-	PRK11197, lldD, L-lactate dehydrogenase; Provisional	NA|426aa|up_8|NZ_CP008943.1_671549_672827_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|281aa|up_7|NZ_CP008943.1_672858_673701_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_6|NZ_CP008943.1_673748_674489_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|141aa|up_5|NZ_CP008943.1_674935_675358_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|435aa|up_4|NZ_CP008943.1_675366_676671_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|1025aa|up_3|NZ_CP008943.1_677863_680938_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|106aa|up_2|NZ_CP008943.1_681081_681399_-	PRK05423, PRK05423, DUF496 family protein	NA|370aa|up_1|NZ_CP008943.1_681832_682942_-	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	DEDDh|477aa|up_0|NZ_CP008943.1_683234_684665_+	PRK11779, sbcB, exonuclease I; Provisional	NA|464aa|down_0|NZ_CP008943.1_686662_688054_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|364aa|down_1|NZ_CP008943.1_688512_689604_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|514aa|down_2|NZ_CP008943.1_689889_691431_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|down_3|NZ_CP008943.1_691427_692423_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|97aa|down_4|NZ_CP008943.1_692824_693115_+	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|276aa|down_5|NZ_CP008943.1_693269_694097_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|16aa|down_6|NZ_CP008943.1_694472_694520_+	NA	NA|300aa|down_7|NZ_CP008943.1_694818_695718_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|444aa|down_8|NZ_CP008943.1_695721_697053_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|383aa|down_9|NZ_CP008943.1_697055_698204_+	PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional
GCF_000750315.1_ASM75031v1	NZ_CP008943	Yersinia pseudotuberculosis strain ATCC 6904 chromosome, complete genome	2	812519-812640	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	CAATTGATTATATCGATTAATATTGGCATTAAG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA|73aa|up_0|NZ_CP008943.1_811943_812162_-,NA	NA|83aa|up_9|NZ_CP008943.1_804819_805068_-	PRK07117, PRK07117, acyl carrier protein; Validated	NA|147aa|up_8|NZ_CP008943.1_805105_805546_-	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|263aa|up_7|NZ_CP008943.1_805632_806421_-	cd05233, SDR_c, classical (c) SDRs	NA|251aa|up_6|NZ_CP008943.1_806423_807176_-	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|240aa|up_5|NZ_CP008943.1_807177_807897_-	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|413aa|up_4|NZ_CP008943.1_807889_809128_-	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|246aa|up_3|NZ_CP008943.1_809143_809881_-	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|428aa|up_2|NZ_CP008943.1_809882_811166_-	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|175aa|up_1|NZ_CP008943.1_811155_811680_-	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|73aa|up_0|NZ_CP008943.1_811943_812162_-	NA	NA|249aa|down_0|NZ_CP008943.1_812892_813639_+	PRK06172, PRK06172, SDR family oxidoreductase	NA|806aa|down_1|NZ_CP008943.1_813792_816210_+	pfam01565, FAD_binding_4, FAD binding domain	NA|110aa|down_2|NZ_CP008943.1_819870_820200_+	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|93aa|down_3|NZ_CP008943.1_820251_820530_-	PRK14426, PRK14426, acylphosphatase; Provisional	NA|397aa|down_4|NZ_CP008943.1_820623_821814_+	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|106aa|down_5|NZ_CP008943.1_821874_822192_+	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|139aa|down_6|NZ_CP008943.1_822300_822717_-	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|227aa|down_7|NZ_CP008943.1_823032_823713_+	PRK03641, PRK03641, DUF2057 family protein	NA|155aa|down_8|NZ_CP008943.1_823891_824356_+	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|685aa|down_9|NZ_CP008943.1_824416_826471_-	PRK11054, helD, DNA helicase IV; Provisional
GCF_000750315.1_ASM75031v1	NZ_CP008943	Yersinia pseudotuberculosis strain ATCC 6904 chromosome, complete genome	3	1315947-1316030	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	TAAGCTGCCTGTACGGCAGTGAAC	24	0	0	NA	NA	I-F	1	1	Orphan	DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA|84aa|down_5|NZ_CP008943.1_1327934_1328186_-,NA|80aa|down_6|NZ_CP008943.1_1328224_1328464_-,NA|41aa|down_8|NZ_CP008943.1_1331312_1331435_+	NA|307aa|up_9|NZ_CP008943.1_1301977_1302898_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|657aa|up_8|NZ_CP008943.1_1303068_1305039_-	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|378aa|up_7|NZ_CP008943.1_1305087_1306221_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|343aa|up_6|NZ_CP008943.1_1306244_1307273_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|516aa|up_5|NZ_CP008943.1_1307284_1308832_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|310aa|up_4|NZ_CP008943.1_1308880_1309810_-	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|329aa|up_3|NZ_CP008943.1_1309953_1310940_-	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|642aa|up_2|NZ_CP008943.1_1311251_1313177_-	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|509aa|up_1|NZ_CP008943.1_1313211_1314738_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|285aa|up_0|NZ_CP008943.1_1315084_1315939_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|1996aa|down_0|NZ_CP008943.1_1316538_1322526_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|771aa|down_1|NZ_CP008943.1_1322633_1324946_+	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|82aa|down_2|NZ_CP008943.1_1325158_1325404_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|134aa|down_3|NZ_CP008943.1_1326925_1327327_+	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|160aa|down_4|NZ_CP008943.1_1327431_1327911_-	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|84aa|down_5|NZ_CP008943.1_1327934_1328186_-	NA	NA|80aa|down_6|NZ_CP008943.1_1328224_1328464_-	NA	NA|639aa|down_7|NZ_CP008943.1_1329272_1331189_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|41aa|down_8|NZ_CP008943.1_1331312_1331435_+	NA	NA|374aa|down_9|NZ_CP008943.1_1332303_1333425_-	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]
GCF_000750315.1_ASM75031v1	NZ_CP008943	Yersinia pseudotuberculosis strain ATCC 6904 chromosome, complete genome	4	1551857-1551966	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	ACACTAACCTGCTACAGACGTTAACCTGATGCAGACACTAAC	42	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA|61aa|up_1|NZ_CP008943.1_1549795_1549978_+,NA	NA|616aa|up_9|NZ_CP008943.1_1540465_1542313_-	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|112aa|up_8|NZ_CP008943.1_1542340_1542676_-	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|375aa|up_7|NZ_CP008943.1_1542787_1543912_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|357aa|up_6|NZ_CP008943.1_1544004_1545075_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_5|NZ_CP008943.1_1545277_1545859_+	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown]	NA|201aa|up_4|NZ_CP008943.1_1546177_1546780_+	PRK15000, PRK15000, peroxiredoxin C	NA|588aa|up_3|NZ_CP008943.1_1547168_1548932_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|227aa|up_2|NZ_CP008943.1_1549139_1549820_-	PRK08177, PRK08177, SDR family oxidoreductase	NA|61aa|up_1|NZ_CP008943.1_1549795_1549978_+	NA	NA|610aa|up_0|NZ_CP008943.1_1549974_1551804_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|465aa|down_0|NZ_CP008943.1_1552416_1553811_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|down_1|NZ_CP008943.1_1553886_1555206_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|361aa|down_2|NZ_CP008943.1_1555679_1556762_-	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|439aa|down_3|NZ_CP008943.1_1556783_1558100_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|down_4|NZ_CP008943.1_1558124_1558814_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|415aa|down_5|NZ_CP008943.1_1559081_1560326_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1230aa|down_6|NZ_CP008943.1_1560322_1564012_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|305aa|down_7|NZ_CP008943.1_1564356_1565271_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_8|NZ_CP008943.1_1565603_1566515_+	PRK00321, rdgC, recombination associated protein; Reviewed	NA|96aa|down_9|NZ_CP008943.1_1566736_1567024_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase
GCF_000750315.1_ASM75031v1	NZ_CP008943	Yersinia pseudotuberculosis strain ATCC 6904 chromosome, complete genome	5	1650296-1650398	5	CRISPRCasFinder	no		DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	TTACAACGCGCAATTTCTGTGTTTCGCGCACAGCAAAA	38	1	1	1650334-1650360	NZ_CP008943.1_2323526-2323552	NA	1	1	Orphan	DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA|62aa|down_0|NZ_CP008943.1_1655583_1655769_+	NA|114aa|up_9|NZ_CP008943.1_1638480_1638822_+	PRK10408, PRK10408, L-valine transporter subunit YgaH	NA|171aa|up_8|NZ_CP008943.1_1638993_1639506_+	PRK10870, PRK10870, transcriptional repressor MprA; Provisional	NA|391aa|up_7|NZ_CP008943.1_1639889_1641062_+	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA|512aa|up_6|NZ_CP008943.1_1641100_1642636_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|389aa|up_5|NZ_CP008943.1_1642788_1643955_-	PRK10864, PRK10864, putative methyltransferase; Provisional	NA|146aa|up_4|NZ_CP008943.1_1644206_1644644_+	PRK10996, PRK10996, thioredoxin 2; Provisional	NA|250aa|up_3|NZ_CP008943.1_1644813_1645563_+	COG3148, COG3148, Uncharacterized conserved protein [Function unknown]	NA|881aa|up_2|NZ_CP008943.1_1645605_1648248_+	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	NA|452aa|up_1|NZ_CP008943.1_1648423_1649779_+	PRK09428, pssA, CDP-diacylglycerol--serine O-phosphatidyltransferase	NA|114aa|up_0|NZ_CP008943.1_1649840_1650182_+	PRK10759, PRK10759, YfiM family lipoprotein	NA|62aa|down_0|NZ_CP008943.1_1655583_1655769_+	NA	NA|858aa|down_1|NZ_CP008943.1_1656094_1658668_-	PRK10865, PRK10865, ATP-dependent chaperone ClpB	NA|244aa|down_2|NZ_CP008943.1_1658797_1659529_-	PRK10723, PRK10723, polyphenol oxidase	NA|326aa|down_3|NZ_CP008943.1_1659530_1660508_-	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA|244aa|down_4|NZ_CP008943.1_1660643_1661375_+	PRK10866, PRK10866, outer membrane protein assembly factor BamD	NA|121aa|down_5|NZ_CP008943.1_1661729_1662092_+	PRK10324, PRK10324, ribosome-associated translation inhibitor RaiA	NA|386aa|down_6|NZ_CP008943.1_1662453_1663611_+	PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional	NA|374aa|down_7|NZ_CP008943.1_1663715_1664837_-	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional	NA|357aa|down_8|NZ_CP008943.1_1664849_1665920_-	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	NA|239aa|down_9|NZ_CP008943.1_1666152_1666869_+	PRK11697, PRK11697, two-component system response regulator BtsR
GCF_000750315.1_ASM75031v1	NZ_CP008943	Yersinia pseudotuberculosis strain ATCC 6904 chromosome, complete genome	6	2558790-2558901	6	CRISPRCasFinder	no		DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	AAAGCACATTTGAGCAGCGAGTGAAG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|488aa|up_9|NZ_CP008943.1_2540700_2542164_+	PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated	NA|268aa|up_8|NZ_CP008943.1_2542279_2543083_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|443aa|up_7|NZ_CP008943.1_2543147_2544476_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|603aa|up_6|NZ_CP008943.1_2544551_2546360_-	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|206aa|up_5|NZ_CP008943.1_2546525_2547143_-	pfam06438, HasA, Heme-binding protein A (HasA)	NA|458aa|up_4|NZ_CP008943.1_2550444_2551818_-	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|258aa|up_3|NZ_CP008943.1_2551984_2552758_-	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|335aa|up_2|NZ_CP008943.1_2552940_2553945_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|388aa|up_1|NZ_CP008943.1_2554195_2555359_+	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|879aa|up_0|NZ_CP008943.1_2555732_2558369_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|295aa|down_0|NZ_CP008943.1_2559198_2560083_-	PRK09432, metF, methylenetetrahydrofolate reductase	NA|812aa|down_1|NZ_CP008943.1_2560315_2562751_-	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional	NA|387aa|down_2|NZ_CP008943.1_2562753_2563914_-	PRK08045, PRK08045, cystathionine gamma-synthase; Provisional	NA|106aa|down_3|NZ_CP008943.1_2564291_2564609_+	PRK05264, PRK05264, met regulon transcriptional regulator MetJ	NA|152aa|down_4|NZ_CP008943.1_2564957_2565413_+	COG4682, COG4682, Predicted membrane protein [Function unknown]	NA|72aa|down_5|NZ_CP008943.1_2565937_2566153_-	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|733aa|down_6|NZ_CP008943.1_2566405_2568604_+	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|343aa|down_7|NZ_CP008943.1_2568956_2569985_+	PRK11041, PRK11041, DNA-binding transcriptional regulator CytR; Provisional	NA|282aa|down_8|NZ_CP008943.1_2570050_2570896_+	PRK12757, PRK12757, cell division protein FtsN; Provisional	NA|175aa|down_9|NZ_CP008943.1_2570995_2571520_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV
GCF_000750315.1_ASM75031v1	NZ_CP008943	Yersinia pseudotuberculosis strain ATCC 6904 chromosome, complete genome	7	3258854-3259139	3	PILER-CR	no		DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	GATAGGGCGCGAGGGGAATGACTGTCCACGACACTTTTTATAAAAGAAAGCGGCTTACCG	60	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|1486aa|up_9|NZ_CP008943.1_3242933_3247391_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|308aa|up_8|NZ_CP008943.1_3248213_3249137_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|779aa|up_7|NZ_CP008943.1_3249420_3251757_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|218aa|up_6|NZ_CP008943.1_3251998_3252652_+	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB	NA|242aa|up_5|NZ_CP008943.1_3252648_3253374_+	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|192aa|up_4|NZ_CP008943.1_3253580_3254156_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|up_3|NZ_CP008943.1_3254166_3254757_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|118aa|up_2|NZ_CP008943.1_3255027_3255381_-	PRK12497, PRK12497, YraN family protein	NA|658aa|up_1|NZ_CP008943.1_3255479_3257453_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|300aa|up_0|NZ_CP008943.1_3257515_3258415_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|235aa|down_0|NZ_CP008943.1_3259238_3259943_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|298aa|down_1|NZ_CP008943.1_3260204_3261098_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|329aa|down_2|NZ_CP008943.1_3261228_3262215_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|132aa|down_3|NZ_CP008943.1_3262300_3262696_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|95aa|down_4|NZ_CP008943.1_3262999_3263284_-	pfam13997, YqjK, YqjK-like protein	NA|132aa|down_5|NZ_CP008943.1_3263280_3263676_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_6|NZ_CP008943.1_3263678_3263984_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]	NA|127aa|down_7|NZ_CP008943.1_3264138_3264519_-	pfam06476, DUF1090, Protein of unknown function (DUF1090)	NA|130aa|down_8|NZ_CP008943.1_3264744_3265134_-	PRK10629, PRK10629, EnvZ/OmpR regulon moderator MzrA	NA|233aa|down_9|NZ_CP008943.1_3265130_3265829_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]
GCF_000750315.1_ASM75031v1	NZ_CP008943	Yersinia pseudotuberculosis strain ATCC 6904 chromosome, complete genome	8	4080589-4080677	7	CRISPRCasFinder	no		DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	TTGAGATGCAGAAGCAAATCGATGAA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA|131aa|up_9|NZ_CP008943.1_4071981_4072374_+,NA|164aa|up_1|NZ_CP008943.1_4078918_4079410_+,NA|165aa|down_1|NZ_CP008943.1_4081103_4081598_+,NA|133aa|down_2|NZ_CP008943.1_4081584_4081983_+,NA|188aa|down_3|NZ_CP008943.1_4081948_4082512_+,NA|133aa|down_6|NZ_CP008943.1_4084452_4084851_+,NA|58aa|down_7|NZ_CP008943.1_4084862_4085036_+,NA|209aa|down_9|NZ_CP008943.1_4087046_4087673_+	NA|131aa|up_9|NZ_CP008943.1_4071981_4072374_+	NA	NA|184aa|up_8|NZ_CP008943.1_4072593_4073145_+	pfam03592, Terminase_2, Terminase small subunit	NA|120aa|up_7|NZ_CP008943.1_4073168_4073528_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|87aa|up_6|NZ_CP008943.1_4073579_4073840_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|539aa|up_5|NZ_CP008943.1_4073983_4075600_+	COG1783, XtmB, Phage terminase large subunit [General function prediction only]	NA|491aa|up_4|NZ_CP008943.1_4075599_4077072_+	pfam06381, DUF1073, Protein of unknown function (DUF1073)	NA|198aa|up_3|NZ_CP008943.1_4077091_4077685_+	pfam04233, Phage_Mu_F, Phage Mu protein F like protein	NA|409aa|up_2|NZ_CP008943.1_4077688_4078915_+	pfam09979, DUF2213, Uncharacterized protein conserved in bacteria (DUF2213)	NA|164aa|up_1|NZ_CP008943.1_4078918_4079410_+	NA	NA|315aa|up_0|NZ_CP008943.1_4079422_4080367_+	pfam09950, DUF2184, Uncharacterized protein conserved in bacteria (DUF2184)	NA|135aa|down_0|NZ_CP008943.1_4080702_4081107_+	pfam13262, DUF4054, Protein of unknown function (DUF4054)	NA|165aa|down_1|NZ_CP008943.1_4081103_4081598_+	NA	NA|133aa|down_2|NZ_CP008943.1_4081584_4081983_+	NA	NA|188aa|down_3|NZ_CP008943.1_4081948_4082512_+	NA	NA|492aa|down_4|NZ_CP008943.1_4082514_4083990_+	pfam11863, DUF3383, Protein of unknown function (DUF3383)	NA|147aa|down_5|NZ_CP008943.1_4084001_4084442_+	pfam11681, DUF3277, Protein of unknown function (DUF3277)	NA|133aa|down_6|NZ_CP008943.1_4084452_4084851_+	NA	NA|58aa|down_7|NZ_CP008943.1_4084862_4085036_+	NA	NA|673aa|down_8|NZ_CP008943.1_4085028_4087047_+	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|209aa|down_9|NZ_CP008943.1_4087046_4087673_+	NA
GCF_000750315.1_ASM75031v1	NZ_CP008943	Yersinia pseudotuberculosis strain ATCC 6904 chromosome, complete genome	9	4343670-4343781	8	CRISPRCasFinder	no		DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	TTTGAAGAAAATTCCTAATGGTTAATTAAT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA|222aa|up_5|NZ_CP008943.1_4335900_4336566_-,NA	NA|365aa|up_9|NZ_CP008943.1_4330427_4331522_+	PRK10760, PRK10760, murein hydrolase B; Provisional	NA|201aa|up_8|NZ_CP008943.1_4332763_4333366_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|161aa|up_7|NZ_CP008943.1_4333738_4334221_-	COG5435, COG5435, Uncharacterized conserved protein [Function unknown]	NA|561aa|up_6|NZ_CP008943.1_4334217_4335900_-	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]	NA|222aa|up_5|NZ_CP008943.1_4335900_4336566_-	NA	NA|446aa|up_4|NZ_CP008943.1_4336562_4337900_-	pfam11397, GlcNAc, Glycosyltransferase (GlcNAc)	NA|344aa|up_3|NZ_CP008943.1_4337939_4338971_-	pfam00419, Fimbrial, Fimbrial protein	NA|398aa|up_2|NZ_CP008943.1_4338977_4340171_-	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|342aa|up_1|NZ_CP008943.1_4340269_4341295_-	COG3520, COG3520, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|627aa|up_0|NZ_CP008943.1_4341294_4343175_-	COG3519, COG3519, Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and    vesicular transport]	NA|886aa|down_0|NZ_CP008943.1_4343959_4346617_+	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family	NA|182aa|down_1|NZ_CP008943.1_4346827_4347373_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|254aa|down_2|NZ_CP008943.1_4347529_4348291_+	PRK09926, PRK09926, fimbrial chaperone	NA|891aa|down_3|NZ_CP008943.1_4348418_4351091_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|203aa|down_4|NZ_CP008943.1_4351075_4351684_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|175aa|down_5|NZ_CP008943.1_4351790_4352315_+	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|501aa|down_6|NZ_CP008943.1_4352338_4353841_+	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|162aa|down_7|NZ_CP008943.1_4354173_4354659_+	COG3157, Hcp, Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion,    and vesicular transport]	NA|180aa|down_8|NZ_CP008943.1_4354932_4355472_+	COG3521, COG3521, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|450aa|down_9|NZ_CP008943.1_4355475_4356825_+	COG3522, COG3522, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]
GCF_000750315.1_ASM75031v1	NZ_CP008943	Yersinia pseudotuberculosis strain ATCC 6904 chromosome, complete genome	10	4535188-4535876	4,9,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-F	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	1	1	4535757-4535788	NZ_CP008943.1_4640453-4640484	I-F:I-F:I-F	10,11,11	11	TypeI-F	DEDDh,DinG,cas3,RT,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA|372aa|up_2|NZ_CP008943.1_4530618_4531734_+,NA|425aa|up_1|NZ_CP008943.1_4531772_4533047_+,NA|70aa|down_9|NZ_CP008943.1_4547675_4547885_+	NA|463aa|up_9|NZ_CP008943.1_4522516_4523905_-	PRK15414, PRK15414, phosphomannomutase	NA|347aa|up_8|NZ_CP008943.1_4523921_4524962_-	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|429aa|up_7|NZ_CP008943.1_4525233_4526520_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|292aa|up_6|NZ_CP008943.1_4526628_4527504_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|275aa|up_5|NZ_CP008943.1_4527504_4528329_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|352aa|up_4|NZ_CP008943.1_4528475_4529531_+	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|313aa|up_3|NZ_CP008943.1_4529557_4530496_+	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|372aa|up_2|NZ_CP008943.1_4530618_4531734_+	NA	NA|425aa|up_1|NZ_CP008943.1_4531772_4533047_+	NA	NA|415aa|up_0|NZ_CP008943.1_4533605_4534850_-	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	cas1|327aa|down_0|NZ_CP008943.1_4536235_4537216_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1096aa|down_1|NZ_CP008943.1_4537212_4540500_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas8f|449aa|down_2|NZ_CP008943.1_4540655_4542002_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|317aa|down_3|NZ_CP008943.1_4541998_4542949_+	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|335aa|down_4|NZ_CP008943.1_4542966_4543971_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NZ_CP008943.1_4543981_4544536_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|340aa|down_6|NZ_CP008943.1_4544613_4545633_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|168aa|down_7|NZ_CP008943.1_4545643_4546147_-	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|453aa|down_8|NZ_CP008943.1_4546193_4547552_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|70aa|down_9|NZ_CP008943.1_4547675_4547885_+	NA
