assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000746625.1_ASM74662v1	NZ_CP009258	Listeria monocytogenes strain Lm60 chromosome, complete genome	1	1530802-1531279	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		DinG,cas3,DEDDh,casR,WYL,csa3	Orphan	ATTTACATTTCACAATAAGTAACTAAAA,ATTTACATTTCACAATAAGTAACTAAAA,ATTTACATTTCACAATAAGTAACTAAAAC	28,28,29	3	3	1530831-1530865|1530895-1530930|1531151-1531186	NZ_CP009258.1_2623896-2623930|NZ_CP009258.1_788902-788937|NZ_CP009258.1_2847757-2847792	I-A:I-A:I-A	7,7,7	7	Orphan	DinG,cas3,DEDDh,casR,WYL,csa3	NA|193aa|up_0|NZ_CP009258.1_1529831_1530410_-,NA|133aa|down_5|NZ_CP009258.1_1535890_1536289_-	NA|472aa|up_9|NZ_CP009258.1_1520822_1522238_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|123aa|up_8|NZ_CP009258.1_1522384_1522753_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|272aa|up_7|NZ_CP009258.1_1523033_1523849_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|477aa|up_6|NZ_CP009258.1_1523969_1525400_+	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|144aa|up_5|NZ_CP009258.1_1525446_1525878_-	pfam00582, Usp, Universal stress protein family	NA|612aa|up_4|NZ_CP009258.1_1525978_1527814_-	NF033186, internalin_K, class 1 internalin InlK	NA|153aa|up_3|NZ_CP009258.1_1528195_1528654_+	pfam12802, MarR_2, MarR family	NA|120aa|up_2|NZ_CP009258.1_1528660_1529020_+	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|227aa|up_1|NZ_CP009258.1_1529044_1529725_-	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|193aa|up_0|NZ_CP009258.1_1529831_1530410_-	NA	NA|312aa|down_0|NZ_CP009258.1_1531516_1532452_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|424aa|down_1|NZ_CP009258.1_1532591_1533863_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|98aa|down_2|NZ_CP009258.1_1533877_1534171_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|349aa|down_3|NZ_CP009258.1_1534186_1535233_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|217aa|down_4|NZ_CP009258.1_1535229_1535880_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|133aa|down_5|NZ_CP009258.1_1535890_1536289_-	NA	NA|156aa|down_6|NZ_CP009258.1_1536305_1536773_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|201aa|down_7|NZ_CP009258.1_1536800_1537403_-	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|687aa|down_8|NZ_CP009258.1_1537406_1539467_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|217aa|down_9|NZ_CP009258.1_1539575_1540226_-	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]
GCF_000746625.1_ASM74662v1	NZ_CP009258	Listeria monocytogenes strain Lm60 chromosome, complete genome	2	1839182-1839333	2	CRISPRCasFinder	no	cas3	DinG,cas3,DEDDh,casR,WYL,csa3	Unclear	GAGCTCGGTTCCGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGG	47	0	0	NA	NA	NA	1	1	Unclear	DinG,cas3,DEDDh,casR,WYL,csa3	NA,NA	cas3|1180aa|up_9|NZ_CP009258.1_1828306_1831846_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|187aa|up_8|NZ_CP009258.1_1831960_1832521_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|195aa|up_7|NZ_CP009258.1_1832627_1833212_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|208aa|up_6|NZ_CP009258.1_1833301_1833925_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|314aa|up_5|NZ_CP009258.1_1834218_1835160_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|225aa|up_4|NZ_CP009258.1_1835236_1835911_+	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|111aa|up_3|NZ_CP009258.1_1835977_1836310_+	PRK01119, PRK01119, putative heavy metal-binding protein	NA|154aa|up_2|NZ_CP009258.1_1836360_1836822_-	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|108aa|up_1|NZ_CP009258.1_1836956_1837280_-	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|290aa|up_0|NZ_CP009258.1_1837351_1838221_-	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|511aa|down_0|NZ_CP009258.1_1840374_1841907_-	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|530aa|down_1|NZ_CP009258.1_1842237_1843827_-	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|318aa|down_2|NZ_CP009258.1_1844068_1845022_+	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|238aa|down_3|NZ_CP009258.1_1845292_1846006_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|319aa|down_4|NZ_CP009258.1_1846048_1847005_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|458aa|down_5|NZ_CP009258.1_1847055_1848429_-	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|103aa|down_6|NZ_CP009258.1_1848815_1849124_-	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|down_7|NZ_CP009258.1_1849243_1849552_-	PRK13259, PRK13259, septation regulator SpoVG	NA|403aa|down_8|NZ_CP009258.1_1850235_1851444_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|231aa|down_9|NZ_CP009258.1_1851440_1852133_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
GCF_000746625.1_ASM74662v1	NZ_CP009258	Listeria monocytogenes strain Lm60 chromosome, complete genome	3	2214817-2214925	3	CRISPRCasFinder	no		DinG,cas3,DEDDh,casR,WYL,csa3	Orphan	TAAATCAAAATAAAGTACATTTTGAAAGTTCT	32	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,casR,WYL,csa3	NA|214aa|up_5|NZ_CP009258.1_2210493_2211135_+,NA|52aa|up_4|NZ_CP009258.1_2211706_2211862_-,NA|74aa|up_2|NZ_CP009258.1_2213803_2214025_+,NA	NA|580aa|up_9|NZ_CP009258.1_2204357_2206097_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|316aa|up_8|NZ_CP009258.1_2206237_2207185_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|313aa|up_7|NZ_CP009258.1_2207227_2208166_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|505aa|up_6|NZ_CP009258.1_2208281_2209796_+	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|214aa|up_5|NZ_CP009258.1_2210493_2211135_+	NA	NA|52aa|up_4|NZ_CP009258.1_2211706_2211862_-	NA	NA|455aa|up_3|NZ_CP009258.1_2212304_2213669_+	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|74aa|up_2|NZ_CP009258.1_2213803_2214025_+	NA	NA|61aa|up_1|NZ_CP009258.1_2214027_2214210_+	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|155aa|up_0|NZ_CP009258.1_2214227_2214692_+	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|580aa|down_0|NZ_CP009258.1_2214982_2216722_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|106aa|down_1|NZ_CP009258.1_2216751_2217069_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|199aa|down_2|NZ_CP009258.1_2217177_2217774_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|82aa|down_3|NZ_CP009258.1_2217788_2218034_+	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|281aa|down_4|NZ_CP009258.1_2218079_2218922_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|280aa|down_5|NZ_CP009258.1_2219042_2219882_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|284aa|down_6|NZ_CP009258.1_2220000_2220852_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|125aa|down_7|NZ_CP009258.1_2220957_2221332_-	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|199aa|down_8|NZ_CP009258.1_2221335_2221932_-	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|330aa|down_9|NZ_CP009258.1_2221953_2222943_-	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional
GCF_000746625.1_ASM74662v1	NZ_CP009258	Listeria monocytogenes strain Lm60 chromosome, complete genome	4	2451092-2451248	4	CRISPRCasFinder	no		DinG,cas3,DEDDh,casR,WYL,csa3	Orphan	ATTTAGGTAAATTTTGAAAATCAGG	25	0	0	NA	NA	NA	2	2	Orphan	DinG,cas3,DEDDh,casR,WYL,csa3	NA,NA|133aa|down_4|NZ_CP009258.1_2456468_2456867_+	NA|166aa|up_9|NZ_CP009258.1_2439575_2440073_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|492aa|up_8|NZ_CP009258.1_2440158_2441634_+	sd00006, TPR, Tetratricopeptide repeat	NA|320aa|up_7|NZ_CP009258.1_2441712_2442672_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|328aa|up_6|NZ_CP009258.1_2442790_2443774_+	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]	NA|354aa|up_5|NZ_CP009258.1_2443790_2444852_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|577aa|up_4|NZ_CP009258.1_2444893_2446624_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|292aa|up_3|NZ_CP009258.1_2446731_2447607_+	PRK05416, PRK05416, RNase adapter RapZ	NA|323aa|up_2|NZ_CP009258.1_2447608_2448577_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|324aa|up_1|NZ_CP009258.1_2448584_2449556_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]	NA|339aa|up_0|NZ_CP009258.1_2449582_2450599_+	PRK13523, PRK13523, NADPH dehydrogenase NamA; Provisional	NA|464aa|down_0|NZ_CP009258.1_2452035_2453427_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|199aa|down_1|NZ_CP009258.1_2453472_2454069_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|478aa|down_2|NZ_CP009258.1_2454225_2455659_+	COG3397, COG3397, Uncharacterized protein conserved in bacteria [Function unknown]	NA|112aa|down_3|NZ_CP009258.1_2455906_2456242_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|133aa|down_4|NZ_CP009258.1_2456468_2456867_+	NA	NA|203aa|down_5|NZ_CP009258.1_2456883_2457492_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|745aa|down_6|NZ_CP009258.1_2457498_2459733_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|309aa|down_7|NZ_CP009258.1_2459811_2460738_+	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)	NA|448aa|down_8|NZ_CP009258.1_2460896_2462240_+	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor	NA|349aa|down_9|NZ_CP009258.1_2462682_2463729_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
