The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	2955646	399335	464251	2955646	terminase,coat,transposase,integrase,capsid	Staphylococcus_phage(40.0%)	74	418954:418970	459187:459203
WP_001052483.1|399335_399527_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001261460.1|399770_400067_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|400087_400591_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|400642_400885_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000119675.1|401113_401911_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q4ZE81	Staphylococcus_phage	100.0	7.1e-108
WP_000270128.1|401934_403149_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	99.5	9.8e-226
WP_000142630.1|403447_404182_-	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	98.4	8.5e-132
WP_001063623.1|404331_404544_+	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	91.4	4.6e-30
WP_001138303.1|404544_404817_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	94.4	2.1e-43
WP_000784873.1|404828_404975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058494.1|404967_405177_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	8.5e-29
WP_001103949.1|405179_405494_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	7.1e-19
WP_000974924.1|405564_407817_+	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	73.0	0.0e+00
WP_000567971.1|408087_408432_+	hypothetical protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	74.5	1.4e-39
WP_001019274.1|408433_409075_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.4	6.5e-112
WP_001190606.1|409524_409866_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	4.2e-57
WP_000846280.1|409877_410456_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_000448770.1|410473_410692_+|capsid	capsid morphogenesis B protein	capsid	NA	NA	NA	NA
WP_000771370.1|410742_411270_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	96.6	1.7e-86
WP_000358778.1|411272_411614_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_001293077.1|411610_412180_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	100.0	1.4e-102
WP_000022954.1|412454_412625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001577971.1|412935_413217_+	hypothetical protein	NA	Q4ZE84	Staphylococcus_phage	85.0	3.7e-19
WP_000813311.1|413334_413847_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
WP_001822249.1|414645_415584_-	Abi family protein	NA	NA	NA	NA	NA
WP_000475326.1|416529_417141_+	toxin	NA	NA	NA	NA	NA
WP_000849177.1|417509_417878_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000769721.1|418058_418631_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_001055897.1|418768_419032_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
418954:418970	attL	TCTCATTTAATTGCTGT	NA	NA	NA	NA
WP_000466748.1|419331_419583_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_000211676.1|419621_419831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000158374.1|420008_420590_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_000868248.1|420655_421039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000746687.1|421293_421920_-	NDxxF motif lipoprotein	NA	NA	NA	NA	NA
WP_000930486.1|422364_423888_-	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.9e-40
WP_000052781.1|423903_424473_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_001289311.1|424964_425720_+	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000991007.1|425800_427189_-	L-cystine transporter	NA	NA	NA	NA	NA
WP_001789518.1|427273_427375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956132.1|428165_429122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000394698.1|429239_429902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000763768.1|430044_430452_-	general stress protein	NA	NA	NA	NA	NA
WP_000421410.1|430964_431543_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000793009.1|431542_432811_+	purine permease	NA	NA	NA	NA	NA
WP_000264071.1|432848_434315_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424966.1|434339_435881_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000237797.1|435948_437142_-|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.2	8.3e-44
WP_000633907.1|437168_437369_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_000845143.1|437866_438097_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	1.0e-27
WP_000804879.1|438093_438516_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	68.6	7.5e-48
WP_001227350.1|439046_439400_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
WP_032506803.1|439457_439646_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	61.4	7.4e-16
WP_000691738.1|439743_441663_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.0	0.0e+00
WP_001791010.1|441678_441795_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000584386.1|442039_442969_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.9e-83
WP_000768372.1|442985_444008_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	3.1e-132
WP_000192392.1|444004_446032_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	65.5	2.3e-195
WP_000331165.1|446028_448482_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	78.9	0.0e+00
WP_000723887.1|448465_448861_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.6	5.9e-47
WP_000248477.1|448932_449571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162472447.1|449626_450121_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	62.7	3.1e-53
WP_000675717.1|450187_450967_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_001009054.1|451008_451230_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
WP_000055376.1|451226_451517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000426689.1|451513_452698_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	68.1	6.3e-161
WP_001130244.1|452879_454283_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	66.5	2.2e-176
WP_000185761.1|454304_455078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001234191.1|455087_455465_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-47
WP_000421279.1|455485_455800_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	77.7	1.2e-42
WP_000181735.1|455999_457793_-	ATP-dependent helicase	NA	E3T5J8	Cafeteria_roenbergensis_virus	23.8	6.9e-26
WP_000470931.1|457789_459979_-	AAA family ATPase	NA	NA	NA	NA	NA
459187:459203	attR	TCTCATTTAATTGCTGT	NA	NA	NA	NA
WP_000997693.1|460112_461303_-|transposase	IS256-like element ISLgar5 family transposase	transposase	NA	NA	NA	NA
WP_000551776.1|461796_462333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549130.1|462889_464251_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	2955646	791857	799677	2955646		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|791857_792913_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|792912_793599_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|793573_794047_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|794388_794829_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|795108_795693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|795791_796505_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|796508_796928_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|796929_797598_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|797948_798542_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|798525_799677_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 3
NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	2955646	811649	826322	2955646		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|811649_812708_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|813058_813601_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|814336_815254_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|815344_815446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|815523_817029_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|817369_817870_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|817889_818756_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|819556_819955_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|819917_822023_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|822140_823112_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|823455_823611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|823649_824621_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|824607_825564_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|825560_826322_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 4
NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	2955646	905775	926984	2955646	terminase,coat,capsid,integrase	Staphylococcus_phage(77.78%)	33	908312:908328	924247:924263
WP_000571218.1|905775_906801_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
WP_000520233.1|906793_907489_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|907506_908328_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
908312:908328	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000266157.1|908470_909691_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000733775.1|909779_910508_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	32.3	1.9e-22
WP_001033316.1|910531_911260_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	2.3e-28
WP_001228759.1|911329_911761_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_000281657.1|911777_912236_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001260004.1|912247_912580_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243851.1|912772_913036_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_000091731.1|913028_913301_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000784875.1|913312_913459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|913451_913661_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103942.1|913663_913984_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001002732.1|914047_914917_+	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_000390455.1|914933_916391_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	96.1	1.0e-277
WP_001039168.1|916691_917054_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000998181.1|917055_917340_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001019764.1|917336_917978_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_001190615.1|918494_918836_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846285.1|918847_919426_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000448101.1|919443_919662_+|capsid	capsid morphogenesis B protein	capsid	NA	NA	NA	NA
WP_000771368.1|919712_920240_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000358777.1|920242_920584_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.4e-57
WP_001293067.1|920580_921150_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000278085.1|921457_922258_+	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001035631.1|922335_922893_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_001795626.1|923265_923418_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_001566008.1|923488_923599_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	91.7	7.1e-11
WP_001286805.1|923600_923786_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000752917.1|924616_924811_+	CsbD family protein	NA	NA	NA	NA	NA
924247:924263	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_001183858.1|925043_925895_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|926222_926984_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 5
NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	2955646	1014070	1061734	2955646	protease,tRNA,transposase,bacteriocin	Streptococcus_phage(33.33%)	45	NA	NA
WP_000448934.1|1014070_1015060_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1015354_1015750_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217730.1|1016120_1016840_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000082731.1|1017993_1019802_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
WP_000896697.1|1020261_1021068_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214065.1|1021090_1021456_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224622.1|1021559_1022153_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|1022338_1022686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1022702_1023338_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1023354_1024164_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669939.1|1024160_1025015_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062417.1|1025035_1026421_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1026430_1028275_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|1028552_1029323_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1029517_1030603_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570699.1|1030944_1032513_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288682.1|1032654_1033413_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600392.1|1033606_1034116_+	YjcG family protein	NA	NA	NA	NA	NA
WP_001154222.1|1034228_1035419_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1035396_1036572_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340118.1|1037004_1038486_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|1038469_1038730_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049959.1|1038729_1040292_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_000928413.1|1040593_1041397_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_000455278.1|1041615_1043940_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021864.1|1043956_1045315_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414177.1|1045453_1046965_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1047451_1048021_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1048230_1048449_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1048529_1049516_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1049714_1049891_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1049905_1050508_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001790623.1|1051424_1051526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790097.1|1051535_1051808_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870806.1|1051851_1053816_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|1053818_1054139_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571178.1|1054135_1054777_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_001795544.1|1054864_1055155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410720.1|1055433_1055721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719184.1|1055726_1057208_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1057296_1057653_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|1058129_1059089_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|1059134_1059266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|1059329_1059545_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_001549130.1|1060372_1061734_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	2955646	1089351	1097824	2955646		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1089351_1089834_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1089820_1090945_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1090948_1091653_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1091652_1091916_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1091917_1092589_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1092581_1094771_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1094749_1096234_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1096226_1097255_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1097257_1097824_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 7
NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	2955646	1149481	1207894	2955646	terminase,tRNA,holin,head,portal,tail,plate,capsid	Staphylococcus_phage(83.87%)	76	NA	NA
WP_000401377.1|1149481_1149964_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_000843611.1|1150025_1151165_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000872158.1|1151291_1151849_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000290472.1|1151928_1152102_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_000861313.1|1152218_1153604_-	recombinase family protein	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
WP_000525016.1|1153953_1154415_-	hypothetical protein	NA	Q4ZBN7	Staphylococcus_phage	100.0	1.2e-83
WP_001260487.1|1154427_1154751_-	helix-turn-helix transcriptional regulator	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
WP_000272858.1|1154914_1155163_+	helix-turn-helix transcriptional regulator	NA	Q4ZBN5	Staphylococcus_phage	100.0	2.2e-39
WP_001153175.1|1155177_1155339_+	hypothetical protein	NA	Q4ZBN4	Staphylococcus_phage	100.0	1.9e-20
WP_044118938.1|1155331_1155625_-	hypothetical protein	NA	Q4ZB03	Staphylococcus_virus	98.8	4.0e-40
WP_001148623.1|1155632_1156376_+	phage antirepressor KilAC domain-containing protein	NA	Q4ZBN2	Staphylococcus_phage	100.0	6.8e-137
WP_000395455.1|1156551_1156782_-	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_000066025.1|1156961_1157123_+	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	98.1	7.2e-20
WP_000165362.1|1157217_1157544_+	DUF2482 family protein	NA	A0EWW7	Staphylococcus_phage	100.0	1.6e-53
WP_000291503.1|1157524_1157785_+	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	100.0	8.9e-44
WP_001205732.1|1157793_1158057_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700572.1|1158065_1160009_+	hypothetical protein	NA	A0EWX0	Staphylococcus_phage	99.8	0.0e+00
WP_000138472.1|1160010_1160931_+	recombinase RecT	NA	S4SUN6	Staphylococcus_phage	100.0	2.3e-166
WP_071621397.1|1161011_1161629_+	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000934764.1|1161629_1162100_+	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	100.0	7.4e-81
WP_000148317.1|1162129_1163014_+	DnaD domain protein	NA	A0EWX4	Staphylococcus_phage	99.7	2.7e-140
WP_000338530.1|1163020_1163239_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401960.1|1163247_1163652_+	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000101274.1|1163664_1164033_+	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
WP_000131363.1|1164036_1164279_+	hypothetical protein	NA	D2JGL2	Staphylococcus_phage	97.5	2.5e-40
WP_000693989.1|1164293_1164500_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_000695757.1|1164502_1164904_+	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	91.0	6.0e-63
WP_000979209.1|1164900_1165248_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000144711.1|1165244_1165553_+	hypothetical protein	NA	R4IFL1	Staphylococcus_phage	100.0	4.8e-52
WP_000185636.1|1165785_1166295_+	dUTP pyrophosphatase	NA	A0A1X9H051	Staphylococcus_phage	100.0	6.6e-91
WP_000195816.1|1166331_1166568_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	97.4	6.9e-35
WP_000483478.1|1166592_1166829_+	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	98.7	5.6e-37
WP_000591892.1|1166821_1166995_+	transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	96.5	4.1e-21
WP_000989954.1|1166995_1167361_+	hypothetical protein	NA	Q4ZBJ9	Staphylococcus_phage	100.0	3.6e-59
WP_000989960.1|1167361_1167508_+	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
WP_000162696.1|1167531_1167954_+	RinA family phage transcriptional activator	NA	S4V7K2	Staphylococcus_phage	100.0	1.6e-74
WP_001003271.1|1168140_1168581_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
WP_000169946.1|1168567_1169845_+|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	100.0	3.0e-249
WP_000909977.1|1169855_1171394_+|portal	phage portal protein	portal	A0A0F6N4I8	Staphylococcus_phage	99.6	1.3e-291
WP_001133044.1|1171400_1172396_+|capsid	minor capsid protein	capsid	A0A0F6N3F1	Staphylococcus_phage	100.0	2.0e-184
WP_000072208.1|1172468_1172639_+	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_000392148.1|1172747_1173368_+	DUF4355 domain-containing protein	NA	B2ZYY4	Staphylococcus_phage	97.6	1.2e-73
WP_000438504.1|1173381_1174356_+|capsid	phage major capsid protein	capsid	A0EWT0	Staphylococcus_virus	100.0	1.3e-183
WP_001114085.1|1174377_1174665_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000208960.1|1174673_1175006_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001268312.1|1175002_1175305_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
WP_001017815.1|1175304_1175652_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188648.1|1175663_1176047_+	hypothetical protein	NA	A0EWT5	Staphylococcus_virus	99.2	3.5e-68
WP_000002577.1|1176065_1176647_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_001100162.1|1176708_1177074_+|tail	tail assembly chaperone	tail	A0A0F6N4J9	Staphylococcus_phage	99.2	8.1e-59
WP_000105584.1|1177103_1177448_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_000141452.1|1177464_1180929_+	hypothetical protein	NA	S4V989	Staphylococcus_phage	99.0	1.8e-264
WP_000350680.1|1180941_1181889_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
WP_000156407.1|1181897_1183799_+|tail	phage tail protein	tail	Q8SDT5	Staphylococcus_phage	99.8	0.0e+00
WP_000369024.1|1183813_1185724_+	hypothetical protein	NA	B2ZYZ7	Staphylococcus_phage	99.8	0.0e+00
WP_000259631.1|1185723_1187547_+|plate	BppU family phage baseplate upper protein	plate	B2ZYZ8	Staphylococcus_phage	99.8	0.0e+00
WP_000705893.1|1187546_1187924_+	DUF2977 domain-containing protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
WP_001790193.1|1187927_1188101_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000466770.1|1188141_1188441_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	99.0	1.3e-46
WP_000524017.1|1188577_1190476_+	glucosaminidase domain-containing protein	NA	Q8SDT1	Staphylococcus_phage	99.5	0.0e+00
WP_000276641.1|1190488_1191727_+|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	100.0	3.5e-210
WP_000398862.1|1191731_1192127_+	hypothetical protein	NA	Q4ZBW9	Staphylococcus_virus	100.0	1.6e-68
WP_000354121.1|1192182_1192620_+|holin	phage holin	holin	B2ZZ05	Staphylococcus_phage	98.6	2.0e-72
WP_001148123.1|1192600_1194046_+	SH3 domain-containing protein	NA	A0EWV1	Staphylococcus_virus	99.6	2.4e-295
WP_001041586.1|1194777_1196715_-	heme uptake protein IsdB	NA	NA	NA	NA	NA
WP_000160859.1|1196917_1197970_-	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA	NA
WP_000789821.1|1198178_1198862_+	heme uptake protein IsdC	NA	NA	NA	NA	NA
WP_001246698.1|1198861_1199938_+	iron-regulated surface determinant protein IsdD	NA	NA	NA	NA	NA
WP_001220199.1|1199934_1200813_+	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA	NA
WP_000594530.1|1200825_1201791_+	hemin ABC transporter permease protein IsdF	NA	NA	NA	NA	NA
WP_001242429.1|1201852_1202587_+	class B sortase	NA	NA	NA	NA	NA
WP_000670950.1|1202605_1202929_+	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_001788617.1|1202965_1203073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435374.1|1203312_1204053_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_000003562.1|1204433_1205492_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.1	9.4e-31
WP_000908982.1|1205491_1207894_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
>prophage 8
NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	2955646	1602269	1687890	2955646	terminase,tRNA,holin,head,portal,integrase,tail,protease,plate,capsid	Staphylococcus_phage(79.49%)	105	1640114:1640131	1686407:1686424
WP_000858789.1|1602269_1603562_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525070.1|1603883_1606577_-	ATP-dependent DNA helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1606600_1607572_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1607558_1608761_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1608765_1609908_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1610148_1610466_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1610802_1611483_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1611554_1612142_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1612131_1612707_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389524.1|1612720_1613965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1613971_1615270_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1615279_1616344_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1616369_1617536_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1617921_1618122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1618330_1618780_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096471.1|1618871_1619831_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1619832_1620558_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1620560_1621133_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1621563_1621836_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1622006_1623005_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1623021_1624332_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1624553_1625729_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1625985_1626177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1626293_1626410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644395.1|1626440_1627100_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1627176_1628145_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1628259_1629246_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1629406_1629523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1629647_1631108_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1631260_1632640_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1632629_1633583_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151997.1|1633690_1633939_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1634044_1634590_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1634868_1634988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472935.1|1635186_1636125_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1636182_1637100_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000126130.1|1637190_1637406_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
WP_000909213.1|1638127_1639582_-	N-acetylmuramoyl-L-alanine amidase	NA	U5U7D2	Staphylococcus_phage	100.0	2.6e-289
WP_000339146.1|1639592_1639895_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1640030_1640330_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
1640114:1640131	attL	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000916020.1|1640375_1640540_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1640532_1640922_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067127.1|1640921_1642388_-|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_000429558.1|1642387_1644298_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1644313_1644604_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1644603_1646187_-|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1646195_1647020_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003435.1|1647019_1653217_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.6	0.0e+00
WP_000438833.1|1653230_1653389_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1653430_1653781_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1653838_1654294_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807541.1|1654385_1655027_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	99.1	5.0e-120
WP_001023802.1|1655061_1655457_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000110020.1|1655457_1655859_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_000395495.1|1655855_1656188_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	99.1	8.2e-58
WP_000050973.1|1656199_1656478_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142738.1|1656546_1657710_-|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	100.0	4.2e-218
WP_000061862.1|1657721_1658495_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	98.4	3.0e-135
WP_001100671.1|1658478_1659717_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	99.8	2.6e-234
WP_000153555.1|1659721_1661413_-|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	100.0	0.0e+00
WP_000778932.1|1661402_1661708_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_000160689.1|1661836_1662151_-	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_000513699.1|1662307_1662745_-	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
WP_001793488.1|1662757_1664125_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
WP_000665205.1|1664105_1664396_-	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_001801650.1|1664529_1664628_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|1664736_1667184_-	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_000265252.1|1667471_1667672_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|1667739_1667892_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000592205.1|1667888_1668275_-	hypothetical protein	NA	A0A0H3U465	Staphylococcus_phage	96.9	2.4e-61
WP_000195835.1|1668271_1668478_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	97.1	6.4e-29
WP_000185653.1|1668514_1669045_-	dUTP pyrophosphatase	NA	C8CH05	Staphylococcus_phage	100.0	1.7e-94
WP_001065071.1|1669037_1669286_-	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	97.6	2.0e-37
WP_000144703.1|1669278_1669587_-	hypothetical protein	NA	Q6R826	Staphylococcus_virus	96.1	8.4e-49
WP_000979209.1|1669583_1669931_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695756.1|1669927_1670332_-	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	100.0	4.2e-72
WP_000693989.1|1670334_1670541_-	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_078064221.1|1670554_1670803_-	hypothetical protein	NA	M9NTB1	Staphylococcus_phage	97.5	1.7e-39
WP_000022736.1|1670802_1671057_-	DUF3310 domain-containing protein	NA	Q6R831	Staphylococcus_virus	100.0	1.3e-42
WP_000113974.1|1671056_1671458_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1671457_1671643_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001802096.1|1671655_1673608_-	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|1673675_1674233_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762553.1|1674258_1675425_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	99.7	5.4e-221
WP_000985980.1|1675421_1675784_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	99.2	1.9e-55
WP_000291481.1|1675797_1676058_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000163431.1|1676062_1676365_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000829612.1|1676357_1676675_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_001285951.1|1676767_1676929_-	DUF1270 domain-containing protein	NA	A0A2I6PEK6	Staphylococcus_phage	100.0	1.1e-20
WP_001124198.1|1676940_1677204_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|1677228_1677444_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001566045.1|1677490_1677730_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	98.7	7.4e-37
WP_001001356.1|1677726_1677903_-	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001115060.1|1677986_1678178_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1678338_1678668_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000525000.1|1678680_1679142_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	99.3	1.3e-85
WP_000755718.1|1679159_1679594_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
WP_000449655.1|1679622_1680018_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_078064955.1|1680107_1680254_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	95.8	5.8e-16
WP_000191459.1|1680250_1680865_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000264751.1|1680990_1682196_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001566047.1|1682238_1684266_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.7	6.9e-115
WP_001548912.1|1684258_1685188_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|1685432_1687184_-	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
1686407:1686424	attR	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000064078.1|1687164_1687890_-	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 9
NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	2955646	1743014	1751326	2955646	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1743014_1743800_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1743925_1744816_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1744825_1746172_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1746285_1747386_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1747388_1748066_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1748196_1749303_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1749526_1751326_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 10
NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	2955646	1820463	1829506	2955646	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1820463_1820982_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1821003_1823277_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1823479_1825759_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1826033_1826294_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112050.1|1826312_1827452_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	3.5e-84
WP_001019172.1|1827474_1828500_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1828501_1829506_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 11
NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	2955646	1958011	2040814	2955646	protease,tRNA,transposase	Staphylococcus_phage(93.55%)	78	NA	NA
WP_001050550.1|1958011_1964572_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1964897_1965209_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001549041.1|1965230_1967648_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1967935_1969117_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1969226_1970180_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1970176_1970740_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1970859_1971261_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000195429.1|1971677_1972850_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000266096.1|1974171_1974999_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1975001_1975121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1975232_1976234_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1976355_1976820_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1976832_1978014_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1978024_1978657_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077343.1|1978663_1979707_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_001261677.1|1980187_1981690_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1982212_1982527_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1982526_1983819_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1983836_1984232_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1984526_1985381_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1985656_1985881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1986079_1986550_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1986662_1987106_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1987092_1987536_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1987831_1988467_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1988906_1989620_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1989879_1990182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1990437_1990803_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1990799_1991153_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1993235_1994069_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1994280_1995189_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1995313_1996507_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1996877_1998470_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000093392.1|1998605_1999091_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_002868962.1|1999465_2000212_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|2000216_2000690_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|2000755_2001013_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|2001009_2002011_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|2002015_2003494_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|2003652_2004108_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|2004410_2005061_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|2005141_2006137_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|2006211_2006838_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|2006878_2007223_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|2007320_2007872_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|2008089_2008731_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|2008844_2009030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|2009031_2009208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|2009218_2009602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|2010205_2010349_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|2010551_2010647_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|2010769_2010871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|2011218_2011596_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|2012116_2016229_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072576.1|2017078_2018278_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000028659.1|2018270_2019827_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_001791797.1|2019990_2020125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|2020189_2020909_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|2021059_2021776_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|2021877_2021985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|2021933_2022653_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|2022773_2023493_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|2023550_2024273_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|2024397_2025105_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|2026068_2026635_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|2027108_2027807_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|2027803_2028565_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|2028561_2029254_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|2029276_2030650_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|2030659_2031178_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|2031193_2032438_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|2032430_2035424_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|2035488_2035632_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|2036368_2036512_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|2036753_2037737_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|2037738_2038674_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_001790220.1|2039473_2040013_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000206350.1|2040025_2040814_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
>prophage 12
NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	2955646	2136467	2214060	2955646	terminase,holin,head,portal,integrase,tail,protease,capsid	Staphylococcus_phage(90.36%)	109	2173234:2173251	2221955:2221972
WP_000827748.1|2136467_2137634_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2137664_2137991_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2138282_2138456_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2138436_2139039_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2139309_2140131_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2140123_2141593_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2141776_2142853_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2142872_2143667_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2143738_2143846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2143856_2145419_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275732.1|2145623_2146721_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2147092_2147653_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2147705_2148635_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001797527.1|2148829_2149003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2149054_2150434_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2150553_2151582_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2151851_2152253_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2152825_2152999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2153449_2154490_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2154546_2155389_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2155385_2155943_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2156002_2156527_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2156647_2157211_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2157276_2158017_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2158016_2158889_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2158885_2159566_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2159566_2160463_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2160459_2160840_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2161103_2161280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2161522_2161621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068547.1|2161820_2163107_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001565911.1|2163731_2165486_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669791.1|2166443_2166623_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|2166933_2167194_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2167246_2167597_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000920038.1|2169093_2169585_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861038.1|2169775_2170531_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611508.1|2170542_2170797_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	98.8	1.5e-40
WP_031762631.1|2170848_2170956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2171008_2171185_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000750412.1|2171293_2172067_-	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
WP_000340977.1|2172439_2172814_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262621.1|2172869_2173157_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_001000058.1|2173202_2173355_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
2173234:2173251	attL	TTTTGTTCTTGTATATAT	NA	NA	NA	NA
WP_000582129.1|2173347_2177130_-	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.3	0.0e+00
WP_001154318.1|2177145_2178636_-|tail	phage tail family protein	tail	R9QST9	Staphylococcus_phage	99.8	5.9e-297
WP_001133522.1|2178635_2183285_-|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	94.2	0.0e+00
WP_000571956.1|2183340_2183463_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	97.5	2.6e-14
WP_000442605.1|2183522_2183969_-	hypothetical protein	NA	O80053	Staphylococcus_phage	92.6	1.3e-69
WP_000570648.1|2184035_2184989_-	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	95.0	4.0e-166
WP_000608371.1|2184989_2185370_-	hypothetical protein	NA	Q9MBP5	Staphylococcus_prophage	85.7	2.9e-59
WP_000501242.1|2185366_2185744_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	98.4	3.4e-60
WP_000975314.1|2185743_2186079_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_001177483.1|2186065_2186398_-|head,tail	phage head-tail connector protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
WP_001252099.1|2186406_2186565_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849950.1|2186600_2187848_-|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_000032525.1|2187935_2188520_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_000511067.1|2188512_2189763_-|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	4.4e-237
WP_000365299.1|2189768_2189969_-	hypothetical protein	NA	A0A1P8L6D3	Staphylococcus_phage	100.0	5.8e-27
WP_000133304.1|2189982_2191677_-|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
WP_000919026.1|2191679_2192147_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|2192275_2192620_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406191.1|2192635_2193088_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
WP_000282755.1|2193202_2193673_-	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	99.3	1.7e-69
WP_001570807.1|2193695_2193896_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000595265.1|2193895_2194045_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001570808.1|2194044_2194431_-	hypothetical protein	NA	Q4ZBK1	Staphylococcus_phage	98.4	1.5e-63
WP_000671662.1|2194420_2194639_-	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	7.8e-33
WP_000219344.1|2194649_2194853_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	97.0	8.3e-29
WP_000195768.1|2194849_2195056_-	DUF1381 domain-containing protein	NA	B7T0C2	Staphylococcus_virus	98.5	4.2e-20
WP_000185669.1|2195092_2195629_-	dUTP diphosphatase	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
WP_001065083.1|2195621_2195870_-	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	100.0	3.1e-38
WP_001105601.1|2195862_2196147_-	hypothetical protein	NA	E9LT36	Staphylococcus_phage	98.9	1.0e-45
WP_000982705.1|2196143_2196593_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	99.3	3.5e-80
WP_000983953.1|2196589_2196784_-	hypothetical protein	NA	A0A0E3XCV8	Staphylococcus_phage	100.0	2.5e-27
WP_000695756.1|2196780_2197185_-	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	100.0	4.2e-72
WP_000693995.1|2197187_2197394_-	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	98.5	8.7e-34
WP_073546265.1|2197407_2197656_-	hypothetical protein	NA	A0A2I6PDB4	Staphylococcus_phage	93.9	2.8e-39
WP_000022723.1|2197655_2197910_-	DUF3310 domain-containing protein	NA	A0A2K9VBW1	Staphylococcus_phage	97.6	1.4e-41
WP_000907344.1|2197909_2198527_-	hypothetical protein	NA	A0A059T7P3	Staphylococcus_phage	99.0	2.8e-83
WP_001187246.1|2198527_2198713_-	DUF3113 family protein	NA	A0A1X9H053	Staphylococcus_phage	96.7	1.2e-26
WP_000049801.1|2198717_2199122_-	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	99.3	2.1e-68
WP_001123693.1|2199132_2199354_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	97.3	3.2e-34
WP_000628839.1|2199366_2199525_-	hypothetical protein	NA	A0A0H3U301	Staphylococcus_phage	98.1	4.5e-22
WP_000443353.1|2199521_2200307_-	ATP-binding protein	NA	A0A0H4J332	Staphylococcus_phage	100.0	1.9e-145
WP_000132048.1|2200319_2201051_-	helix-turn-helix domain-containing protein	NA	A0A1J0MGB2	Staphylococcus_phage	79.3	1.2e-80
WP_000414755.1|2201115_2201397_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_001081076.1|2201389_2201539_-	hypothetical protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
WP_001199434.1|2201535_2202207_-	hypothetical protein	NA	A7TWM9	Staphylococcus_phage	98.7	4.9e-126
WP_000704713.1|2202219_2202774_-	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	1.0e-100
WP_000139741.1|2202803_2203583_-	ATP-binding protein	NA	Q9G028	Staphylococcus_virus	99.6	7.4e-142
WP_000815400.1|2203575_2203797_-	DUF2483 family protein	NA	A0A2H4PQR5	Staphylococcus_phage	100.0	4.2e-34
WP_000291487.1|2203806_2204067_-	DUF1108 family protein	NA	A0A2H4PQR7	Staphylococcus_phage	100.0	3.4e-43
WP_000066020.1|2204159_2204321_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120197.1|2204317_2204638_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|2204696_2205329_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|2205343_2205484_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148861.1|2205514_2205712_-	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_001148337.1|2205727_2206477_-	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
WP_000351243.1|2206533_2207073_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_000435341.1|2207096_2207357_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000338186.1|2207374_2207599_-	DUF739 family protein	NA	A7TW90	Staphylococcus_phage	100.0	4.5e-36
WP_001208482.1|2207757_2208528_+	helix-turn-helix domain-containing protein	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
WP_000705240.1|2208727_2208910_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|2208945_2209092_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|2209088_2209703_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000857193.1|2209810_2210848_+|integrase	site-specific integrase	integrase	E9LT82	Staphylococcus_phage	93.0	1.0e-178
WP_000595324.1|2211966_2212983_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
WP_000791407.1|2213004_2214060_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
2221955:2221972	attR	TTTTGTTCTTGTATATAT	NA	NA	NA	NA
>prophage 1
NZ_CP007500	Staphylococcus aureus strain 2395 USA500 plasmid pUSA500, complete sequence	32406	12903	26099	32406	transposase	Staphylococcus_phage(70.0%)	13	NA	NA
WP_000229534.1|12903_14355_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	49.9	2.4e-117
WP_000873696.1|14468_15011_+	recombinase family protein	NA	NA	NA	NA	NA
WP_000938699.1|15024_15210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000635273.1|15212_15821_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	30.8	1.7e-13
WP_042744155.1|16823_17996_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	1.3e-134
WP_001028144.1|18125_19565_-	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
WP_000393259.1|19565_19958_-	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_000195429.1|20014_21187_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000491362.1|22406_22649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001106019.1|22689_23364_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	100.0	8.1e-129
WP_000282655.1|23477_24434_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	100.0	1.1e-190
WP_000175735.1|24475_24961_+	trimethoprim-resistant dihydrofolate reductase DfrC	NA	A0A0N9S8H6	Staphylococcus_phage	100.0	1.1e-90
WP_001106022.1|25424_26099_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	100.0	6.2e-129
