assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000746505.1_ASM74650v1	NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	1	428049-428149	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_8|NZ_CP007499.1_419621_419831_-,NA|128aa|up_6|NZ_CP007499.1_420655_421039_-,NA|34aa|up_0|NZ_CP007499.1_427273_427375_+,NA|221aa|down_1|NZ_CP007499.1_429239_429902_-	NA|84aa|up_9|NZ_CP007499.1_419331_419583_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP007499.1_419621_419831_-	NA	NA|194aa|up_7|NZ_CP007499.1_420008_420590_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP007499.1_420655_421039_-	NA	NA|209aa|up_5|NZ_CP007499.1_421293_421920_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP007499.1_422364_423888_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP007499.1_423903_424473_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP007499.1_424964_425720_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP007499.1_425800_427189_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP007499.1_427273_427375_+	NA	NA|319aa|down_0|NZ_CP007499.1_428165_429122_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP007499.1_429239_429902_-	NA	NA|136aa|down_2|NZ_CP007499.1_430044_430452_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP007499.1_430964_431543_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP007499.1_431542_432811_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP007499.1_432848_434315_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP007499.1_434339_435881_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NZ_CP007499.1_435948_437142_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NZ_CP007499.1_437168_437369_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NZ_CP007499.1_437866_438097_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_000746505.1_ASM74650v1	NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	2	697739-697831	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP007499.1_694222_694330_+,NA|169aa|down_4|NZ_CP007499.1_701578_702085_+,NA|239aa|down_5|NZ_CP007499.1_702246_702963_+	NA|313aa|up_9|NZ_CP007499.1_688424_689363_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP007499.1_689573_690110_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP007499.1_690278_690755_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP007499.1_690794_692090_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP007499.1_692117_692639_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP007499.1_693137_694148_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP007499.1_694222_694330_+	NA	NA|139aa|up_2|NZ_CP007499.1_694422_694839_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP007499.1_694835_696497_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP007499.1_696885_697521_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP007499.1_697899_698787_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP007499.1_698934_699885_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP007499.1_699939_700659_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP007499.1_700642_701443_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP007499.1_701578_702085_+	NA	NA|239aa|down_5|NZ_CP007499.1_702246_702963_+	NA	NA|263aa|down_6|NZ_CP007499.1_703131_703920_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP007499.1_704170_704545_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP007499.1_705492_706422_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP007499.1_706616_706841_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_000746505.1_ASM74650v1	NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	3	860141-860226	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	2	860171-860196|860171-860196	NZ_CP007499.1_2913167-2913192|NZ_CP007499.1_968990-968965	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP007499.1_847393_848233_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP007499.1_848406_849057_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP007499.1_849053_849290_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP007499.1_849558_851544_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP007499.1_851551_854398_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP007499.1_855059_855992_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP007499.1_855997_856837_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP007499.1_856844_857330_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP007499.1_857337_858777_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP007499.1_858843_859779_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP007499.1_860658_861570_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP007499.1_861566_862562_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP007499.1_862671_863616_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP007499.1_864188_864776_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP007499.1_865018_865921_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP007499.1_866623_867253_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP007499.1_868012_869026_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP007499.1_869078_870089_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP007499.1_870227_871418_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP007499.1_871539_872301_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_000746505.1_ASM74650v1	NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	4	904213-904294	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	904237-904270|904237-904270	NZ_CP007499.1_1458551-1458518|NZ_CP007499.1_1549022-1549055	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|144aa|down_8|NZ_CP007499.1_911329_911761_-	NA|194aa|up_9|NZ_CP007499.1_897316_897898_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP007499.1_897970_898588_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP007499.1_898742_899237_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP007499.1_899635_900058_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP007499.1_900205_900922_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP007499.1_901004_901544_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP007499.1_901693_902014_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP007499.1_902157_902514_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP007499.1_902671_903052_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP007499.1_903230_904109_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP007499.1_904850_905237_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP007499.1_905229_905526_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP007499.1_905775_906801_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP007499.1_906793_907489_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP007499.1_907506_908328_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP007499.1_908470_909691_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP007499.1_909779_910508_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP007499.1_910531_911260_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|144aa|down_8|NZ_CP007499.1_911329_911761_-	NA	NA|153aa|down_9|NZ_CP007499.1_911777_912236_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain
GCF_000746505.1_ASM74650v1	NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	5	1104127-1104214	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|NZ_CP007499.1_1104223_1104358_-,NA|432aa|down_1|NZ_CP007499.1_1104509_1105805_+	NA|224aa|up_9|NZ_CP007499.1_1091917_1092589_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP007499.1_1092581_1094771_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP007499.1_1094749_1096234_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP007499.1_1096226_1097255_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP007499.1_1097257_1097824_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP007499.1_1097838_1099317_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP007499.1_1099338_1100586_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP007499.1_1100850_1101657_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP007499.1_1101649_1103050_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP007499.1_1103064_1103640_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP007499.1_1104223_1104358_-	NA	NA|432aa|down_1|NZ_CP007499.1_1104509_1105805_+	NA	NA|391aa|down_2|NZ_CP007499.1_1106229_1107402_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP007499.1_1107455_1107998_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP007499.1_1108151_1108418_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP007499.1_1108420_1110139_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP007499.1_1110375_1110609_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP007499.1_1110806_1112168_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP007499.1_1112164_1113184_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP007499.1_1113316_1113979_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000746505.1_ASM74650v1	NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	6	1231162-1231247	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	1	1231192-1231217	NZ_CP007499.1_2913192-2913167	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|31aa|up_9|NZ_CP007499.1_1223732_1223825_-,NA|169aa|up_7|NZ_CP007499.1_1224857_1225364_+,NA|62aa|up_4|NZ_CP007499.1_1227445_1227631_-,NA|78aa|up_3|NZ_CP007499.1_1228252_1228486_-,NA|49aa|up_1|NZ_CP007499.1_1230594_1230741_+,NA|75aa|up_0|NZ_CP007499.1_1230697_1230922_+,NA|76aa|down_6|NZ_CP007499.1_1238221_1238449_+	NA|31aa|up_9|NZ_CP007499.1_1223732_1223825_-	NA	NA|134aa|up_8|NZ_CP007499.1_1223784_1224186_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP007499.1_1224857_1225364_+	NA	NA|166aa|up_6|NZ_CP007499.1_1225622_1226120_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP007499.1_1226273_1226624_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP007499.1_1227445_1227631_-	NA	NA|78aa|up_3|NZ_CP007499.1_1228252_1228486_-	NA	NA|320aa|up_2|NZ_CP007499.1_1228962_1229922_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP007499.1_1230594_1230741_+	NA	NA|75aa|up_0|NZ_CP007499.1_1230697_1230922_+	NA	NA|239aa|down_0|NZ_CP007499.1_1231422_1232139_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP007499.1_1232246_1232972_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP007499.1_1233066_1233792_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP007499.1_1234229_1235231_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP007499.1_1235253_1236186_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NZ_CP007499.1_1236357_1237914_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP007499.1_1238221_1238449_+	NA	NA|316aa|down_7|NZ_CP007499.1_1238753_1239701_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP007499.1_1239949_1240138_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP007499.1_1241049_1241184_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_000746505.1_ASM74650v1	NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	7	1952915-1953125	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGANNN	41	3	27	1952953-1952973|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953012-1953031|1953070-1953087	NZ_CP007499.1_1952894-1952914|NZ_CP007499.1_148282-148301|NZ_CP007499.1_291479-291498|NZ_CP007499.1_376018-376037|NZ_CP007499.1_376073-376092|NZ_CP007499.1_854745-854726|NZ_CP007499.1_854800-854781|NZ_CP007499.1_860349-860330|NZ_CP007499.1_860407-860388|NZ_CP007499.1_904310-904291|NZ_CP007499.1_988635-988616|NZ_CP007499.1_1114129-1114110|NZ_CP007499.1_1458419-1458438|NZ_CP007499.1_1549154-1549135|NZ_CP007499.1_1771423-1771404|NZ_CP007499.1_1952839-1952858|NZ_CP007499.1_2112400-2112381|NZ_CP007499.1_2913230-2913211|NZ_CP007499.1_291534-291553|NZ_CP007499.1_867615-867596|NZ_CP007499.1_1231097-1231116|NZ_CP007499.1_1507751-1507732|NZ_CP007499.1_1805388-1805369|NZ_CP007499.1_2121808-2121789|NZ_CP007499.1_2664893-2664912|NZ_CP007499.1_827708-827727|NZ_CP007499.1_1952897-1952914	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|164aa|up_9|NZ_CP007499.1_1936126_1936618_-	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|438aa|up_8|NZ_CP007499.1_1936691_1938005_-	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|199aa|up_7|NZ_CP007499.1_1941874_1942471_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_6|NZ_CP007499.1_1942499_1943357_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_5|NZ_CP007499.1_1943456_1943768_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_4|NZ_CP007499.1_1943832_1944909_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_3|NZ_CP007499.1_1944995_1945307_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|264aa|up_2|NZ_CP007499.1_1948962_1949754_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP007499.1_1950303_1951152_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP007499.1_1951155_1952565_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP007499.1_1953428_1953851_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP007499.1_1953867_1954563_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP007499.1_1954559_1956221_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|2187aa|down_3|NZ_CP007499.1_1958011_1964572_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_4|NZ_CP007499.1_1964897_1965209_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_5|NZ_CP007499.1_1965230_1967648_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_6|NZ_CP007499.1_1967935_1969117_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_7|NZ_CP007499.1_1969226_1970180_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_8|NZ_CP007499.1_1970176_1970740_+	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|134aa|down_9|NZ_CP007499.1_1970859_1971261_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family
GCF_000746505.1_ASM74650v1	NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	8	2347841-2347991	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP007499.1_2342712_2342943_-,NA|364aa|up_0|NZ_CP007499.1_2346731_2347823_+,NA|35aa|down_0|NZ_CP007499.1_2348322_2348427_-,NA|31aa|down_2|NZ_CP007499.1_2350538_2350631_+	NA|237aa|up_9|NZ_CP007499.1_2338325_2339036_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP007499.1_2339156_2339600_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP007499.1_2339799_2340213_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP007499.1_2340667_2342041_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP007499.1_2342712_2342943_-	NA	NA|313aa|up_4|NZ_CP007499.1_2342973_2343912_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP007499.1_2344346_2345012_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP007499.1_2345163_2345484_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP007499.1_2345485_2346466_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP007499.1_2346731_2347823_+	NA	NA|35aa|down_0|NZ_CP007499.1_2348322_2348427_-	NA	NA|379aa|down_1|NZ_CP007499.1_2349113_2350250_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP007499.1_2350538_2350631_+	NA	NA|286aa|down_3|NZ_CP007499.1_2351335_2352193_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP007499.1_2352260_2353043_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP007499.1_2353274_2355080_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP007499.1_2355760_2357299_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP007499.1_2357333_2359466_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP007499.1_2359477_2359912_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP007499.1_2359911_2361018_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_000746505.1_ASM74650v1	NZ_CP007499	Staphylococcus aureus strain 2395 USA500 chromosome, complete genome	9	2473335-2473528	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	15	2473358-2473390|2473358-2473390|2473358-2473390|2473358-2473390|2473358-2473390|2473358-2473390|2473414-2473449|2473414-2473449|2473414-2473449|2473414-2473449|2473473-2473505|2473473-2473505|2473473-2473505|2473473-2473505|2473473-2473505	NZ_CP007499.1_860207-860239|NZ_CP007499.1_1231181-1231149|NZ_CP007499.1_1458505-1458473|NZ_CP007499.1_1549068-1549100|NZ_CP007499.1_2110974-2111006|NZ_CP007499.1_2749985-2750017|NZ_CP007499.1_1231128-1231093|NZ_CP007499.1_1952870-1952835|NZ_CP007499.1_1771392-1771427|NZ_CP007499.1_2121777-2121812|NZ_CP007499.1_860207-860239|NZ_CP007499.1_1231181-1231149|NZ_CP007499.1_1458505-1458473|NZ_CP007499.1_2110974-2111006|NZ_CP007499.1_2749985-2750017	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP007499.1_2463862_2464027_+,NA|106aa|up_8|NZ_CP007499.1_2464271_2464589_+,NA|84aa|up_5|NZ_CP007499.1_2469713_2469965_+,NA|57aa|up_0|NZ_CP007499.1_2473104_2473275_+,NA	NA|55aa|up_9|NZ_CP007499.1_2463862_2464027_+	NA	NA|106aa|up_8|NZ_CP007499.1_2464271_2464589_+	NA	NA|1056aa|up_7|NZ_CP007499.1_2464775_2467943_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP007499.1_2468059_2469325_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP007499.1_2469713_2469965_+	NA	NA|255aa|up_4|NZ_CP007499.1_2469956_2470721_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP007499.1_2470882_2471323_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP007499.1_2471315_2472527_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP007499.1_2472628_2472979_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP007499.1_2473104_2473275_+	NA	NA|341aa|down_0|NZ_CP007499.1_2473669_2474692_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP007499.1_2474711_2475311_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP007499.1_2475317_2475551_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP007499.1_2475556_2476003_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP007499.1_2476016_2476502_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP007499.1_2476498_2477758_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP007499.1_2477820_2478315_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP007499.1_2478316_2478823_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP007499.1_2478853_2479858_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP007499.1_2480027_2480633_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
