assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	1	92722-92871	1	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	TATGGTTAAAAAGATACGTTCGTTTAGCGTGCTACTACGCAAGTAAATGTACGTA	55	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA|239aa|up_2|NZ_CP009238.1_89175_89892_-,NA|53aa|down_2|NZ_CP009238.1_94496_94655_+	NA|104aa|up_9|NZ_CP009238.1_81557_81869_+	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|236aa|up_8|NZ_CP009238.1_82172_82880_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|160aa|up_7|NZ_CP009238.1_82876_83356_-	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|349aa|up_6|NZ_CP009238.1_84037_85084_-	pfam00419, Fimbrial, Fimbrial protein	NA|824aa|up_5|NZ_CP009238.1_85093_87565_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|243aa|up_4|NZ_CP009238.1_87703_88432_-	PRK09926, PRK09926, fimbrial chaperone	NA|185aa|up_3|NZ_CP009238.1_88504_89059_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|239aa|up_2|NZ_CP009238.1_89175_89892_-	NA	NA|353aa|up_1|NZ_CP009238.1_89885_90944_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|405aa|up_0|NZ_CP009238.1_91350_92565_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|262aa|down_0|NZ_CP009238.1_93027_93813_+	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|151aa|down_1|NZ_CP009238.1_93888_94341_-	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur	NA|53aa|down_2|NZ_CP009238.1_94496_94655_+	NA	NA|232aa|down_3|NZ_CP009238.1_94657_95353_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|280aa|down_4|NZ_CP009238.1_95354_96194_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|304aa|down_5|NZ_CP009238.1_96362_97274_+	cd01137, PsaA, Metal binding protein PsaA	NA|442aa|down_6|NZ_CP009238.1_97404_98730_+	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed	NA|286aa|down_7|NZ_CP009238.1_98754_99612_+	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|270aa|down_8|NZ_CP009238.1_99608_100418_+	PRK13328, PRK13328, type III pantothenate kinase	NA|216aa|down_9|NZ_CP009238.1_100609_101257_+	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	2	405843-405969	2	CRISPRCasFinder	no	DinG	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Type IV-A	ATAAGATTGCCAGTGATGATGATCGAATCGTTTTACTGA	39	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA,NA	NA|158aa|up_9|NZ_CP009238.1_391291_391765_+	pfam01337, Barstar, Barstar (barnase inhibitor)	NA|737aa|up_8|NZ_CP009238.1_391892_394103_-	pfam12805, FUSC-like, FUSC-like inner membrane protein yccS	NA|254aa|up_7|NZ_CP009238.1_394112_394874_-	PRK02101, PRK02101, peroxide stress protein YaaA	NA|441aa|up_6|NZ_CP009238.1_394884_396207_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|771aa|up_5|NZ_CP009238.1_396308_398621_-	COG2183, Tex, Transcriptional accessory protein [Transcription]	DinG|679aa|up_4|NZ_CP009238.1_399151_401188_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|274aa|up_3|NZ_CP009238.1_401493_402315_-	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|319aa|up_2|NZ_CP009238.1_402389_403346_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|260aa|up_1|NZ_CP009238.1_403362_404142_+	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase	NA|186aa|up_0|NZ_CP009238.1_404965_405523_+	TIGR01848, Uncharacterized_protein_Alvin_0064, polyhydroxyalkanoate synthesis repressor PhaR	NA|126aa|down_0|NZ_CP009238.1_406381_406759_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|522aa|down_1|NZ_CP009238.1_406936_408502_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|304aa|down_2|NZ_CP009238.1_408879_409791_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|345aa|down_3|NZ_CP009238.1_409961_410996_+	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|215aa|down_4|NZ_CP009238.1_411368_412013_+	COG1636, COG1636, Uncharacterized protein conserved in bacteria [Function unknown]	NA|465aa|down_5|NZ_CP009238.1_412335_413730_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|217aa|down_6|NZ_CP009238.1_413773_414424_-	PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional	NA|325aa|down_7|NZ_CP009238.1_414438_415413_-	pfam06166, DUF979, Protein of unknown function (DUF979)	NA|247aa|down_8|NZ_CP009238.1_415431_416172_-	pfam06149, DUF969, Protein of unknown function (DUF969)	NA|723aa|down_9|NZ_CP009238.1_416434_418603_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	3	412054-412151	3	CRISPRCasFinder	no	DinG	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Type IV-A	CAAATCCATTACATTACATCGATGGCGTGAGT	32	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA,NA	DinG|679aa|up_9|NZ_CP009238.1_399151_401188_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|274aa|up_8|NZ_CP009238.1_401493_402315_-	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|319aa|up_7|NZ_CP009238.1_402389_403346_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|260aa|up_6|NZ_CP009238.1_403362_404142_+	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase	NA|186aa|up_5|NZ_CP009238.1_404965_405523_+	TIGR01848, Uncharacterized_protein_Alvin_0064, polyhydroxyalkanoate synthesis repressor PhaR	NA|126aa|up_4|NZ_CP009238.1_406381_406759_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|522aa|up_3|NZ_CP009238.1_406936_408502_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|304aa|up_2|NZ_CP009238.1_408879_409791_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|345aa|up_1|NZ_CP009238.1_409961_410996_+	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold	NA|215aa|up_0|NZ_CP009238.1_411368_412013_+	COG1636, COG1636, Uncharacterized protein conserved in bacteria [Function unknown]	NA|465aa|down_0|NZ_CP009238.1_412335_413730_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|217aa|down_1|NZ_CP009238.1_413773_414424_-	PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional	NA|325aa|down_2|NZ_CP009238.1_414438_415413_-	pfam06166, DUF979, Protein of unknown function (DUF979)	NA|247aa|down_3|NZ_CP009238.1_415431_416172_-	pfam06149, DUF969, Protein of unknown function (DUF969)	NA|723aa|down_4|NZ_CP009238.1_416434_418603_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|109aa|down_5|NZ_CP009238.1_418730_419057_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|199aa|down_6|NZ_CP009238.1_419080_419677_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|385aa|down_7|NZ_CP009238.1_419922_421077_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1081aa|down_8|NZ_CP009238.1_421088_424331_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|384aa|down_9|NZ_CP009238.1_424695_425847_+	PRK07337, PRK07337, pyridoxal phosphate-dependent aminotransferase
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	4	425866-425956	4	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	CTCAATTTTTATATCATCGTATTCC	25	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA,NA|286aa|down_7|NZ_CP009238.1_443817_444675_+,NA|284aa|down_8|NZ_CP009238.1_444773_445625_+	NA|465aa|up_9|NZ_CP009238.1_412335_413730_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|217aa|up_8|NZ_CP009238.1_413773_414424_-	PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional	NA|325aa|up_7|NZ_CP009238.1_414438_415413_-	pfam06166, DUF979, Protein of unknown function (DUF979)	NA|247aa|up_6|NZ_CP009238.1_415431_416172_-	pfam06149, DUF969, Protein of unknown function (DUF969)	NA|723aa|up_5|NZ_CP009238.1_416434_418603_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|109aa|up_4|NZ_CP009238.1_418730_419057_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|199aa|up_3|NZ_CP009238.1_419080_419677_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|385aa|up_2|NZ_CP009238.1_419922_421077_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1081aa|up_1|NZ_CP009238.1_421088_424331_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|384aa|up_0|NZ_CP009238.1_424695_425847_+	PRK07337, PRK07337, pyridoxal phosphate-dependent aminotransferase	NA|108aa|down_0|NZ_CP009238.1_426049_426373_+	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|562aa|down_1|NZ_CP009238.1_426369_428055_+	PRK09395, actP, cation/acetate symporter ActP	NA|954aa|down_2|NZ_CP009238.1_428480_431342_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|404aa|down_3|NZ_CP009238.1_431370_432582_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|476aa|down_4|NZ_CP009238.1_432632_434060_+	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated	NA|595aa|down_5|NZ_CP009238.1_434223_436008_+	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|2599aa|down_6|NZ_CP009238.1_436024_443821_+	pfam13332, Fil_haemagg_2, Haemagluttinin repeat	NA|286aa|down_7|NZ_CP009238.1_443817_444675_+	NA	NA|284aa|down_8|NZ_CP009238.1_444773_445625_+	NA	NA|334aa|down_9|NZ_CP009238.1_445694_446696_+	pfam15575, Imm49, Immunity protein 49
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	5	461135-461232	5	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	GTCTTTCAACGATGATGTTTTCAAGGT	27	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA|148aa|up_1|NZ_CP009238.1_459274_459718_+,NA	NA|350aa|up_9|NZ_CP009238.1_451008_452058_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|213aa|up_8|NZ_CP009238.1_452148_452787_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|355aa|up_7|NZ_CP009238.1_453072_454137_+	PRK09196, PRK09196, fructose-bisphosphate aldolase class II	NA|293aa|up_6|NZ_CP009238.1_454138_455017_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|162aa|up_5|NZ_CP009238.1_455019_455505_+	pfam00731, AIRC, AIR carboxylase	NA|391aa|up_4|NZ_CP009238.1_455508_456681_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|317aa|up_3|NZ_CP009238.1_456691_457642_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|508aa|up_2|NZ_CP009238.1_457661_459185_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|148aa|up_1|NZ_CP009238.1_459274_459718_+	NA	NA|351aa|up_0|NZ_CP009238.1_460079_461132_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|321aa|down_0|NZ_CP009238.1_461330_462293_-	PRK08999, PRK08999, Nudix family hydrolase	NA|290aa|down_1|NZ_CP009238.1_462305_463175_-	pfam05673, DUF815, Protein of unknown function (DUF815)	NA|322aa|down_2|NZ_CP009238.1_463255_464221_+	PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional	NA|248aa|down_3|NZ_CP009238.1_464384_465128_+	cd00994, PBP2_GlnH, Glutamine binding domain of ABC-type transporter; the type 2 periplasmic binding protein fold	NA|253aa|down_4|NZ_CP009238.1_465153_465912_+	cd00994, PBP2_GlnH, Glutamine binding domain of ABC-type transporter; the type 2 periplasmic binding protein fold	NA|239aa|down_5|NZ_CP009238.1_465924_466641_+	PRK09494, glnP, glutamine ABC transporter permease protein; Reviewed	NA|241aa|down_6|NZ_CP009238.1_466670_467393_+	PRK09493, glnQ, glutamine ABC transporter ATP-binding protein GlnQ	NA|621aa|down_7|NZ_CP009238.1_467396_469259_+	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|168aa|down_8|NZ_CP009238.1_469838_470342_+	pfam04345, Chor_lyase, Chorismate lyase	NA|104aa|down_9|NZ_CP009238.1_470662_470974_+	PRK05573, rplU, 50S ribosomal protein L21; Validated
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	6	480304-480411	6	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	GTTGATACACCGCCATCTGCTTAGTGTTGATG	32	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA,NA|371aa|down_1|NZ_CP009238.1_481724_482837_-,NA|656aa|down_9|NZ_CP009238.1_492488_494456_+	NA|87aa|up_9|NZ_CP009238.1_470992_471253_+	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|368aa|up_8|NZ_CP009238.1_471700_472804_+	PRK12299, obgE, GTPase CgtA; Reviewed	NA|408aa|up_7|NZ_CP009238.1_473085_474309_-	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA|427aa|up_6|NZ_CP009238.1_474320_475601_-	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|238aa|up_5|NZ_CP009238.1_475590_476304_-	PRK00043, thiE, thiamine phosphate synthase	NA|63aa|up_4|NZ_CP009238.1_476333_476522_+	pfam00301, Rubredoxin, Rubredoxin	NA|193aa|up_3|NZ_CP009238.1_476543_477122_+	PRK00228, PRK00228, YqgE/AlgH family protein	NA|130aa|up_2|NZ_CP009238.1_477131_477521_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|389aa|up_1|NZ_CP009238.1_477517_478684_+	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG	NA|270aa|up_0|NZ_CP009238.1_478693_479503_+	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA|269aa|down_0|NZ_CP009238.1_480571_481378_-	NF012221, MARTX_Nterm, MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA|371aa|down_1|NZ_CP009238.1_481724_482837_-	NA	NA|214aa|down_2|NZ_CP009238.1_483286_483928_-	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|266aa|down_3|NZ_CP009238.1_483924_484722_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|372aa|down_4|NZ_CP009238.1_484721_485837_-	TIGR01010, BexC_CtrB_KpsE, polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family	NA|386aa|down_5|NZ_CP009238.1_485837_486995_-	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]	NA|376aa|down_6|NZ_CP009238.1_487225_488353_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|420aa|down_7|NZ_CP009238.1_488365_489625_+	PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional	NA|950aa|down_8|NZ_CP009238.1_489624_492474_+	pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1	NA|656aa|down_9|NZ_CP009238.1_492488_494456_+	NA
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	7	522124-522241	7	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	CTGGGATGATGGTGACATCAGGATTTAGGTG	31	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA,NA|48aa|down_1|NZ_CP009238.1_525284_525428_+	NA|1199aa|up_9|NZ_CP009238.1_507226_510823_+	PRK11905, PRK11905, bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|491aa|up_8|NZ_CP009238.1_510857_512330_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|531aa|up_7|NZ_CP009238.1_512587_514180_+	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|349aa|up_6|NZ_CP009238.1_514360_515407_-	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|239aa|up_5|NZ_CP009238.1_515495_516212_+	PRK01723, PRK01723, 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	NA|75aa|up_4|NZ_CP009238.1_516602_516827_-	cd00291, SirA_YedF_YeeD, SirA, YedF, and YeeD	NA|360aa|up_3|NZ_CP009238.1_516811_517891_-	pfam04143, Sulf_transp, Sulphur transport	NA|388aa|up_2|NZ_CP009238.1_518315_519479_+	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|311aa|up_1|NZ_CP009238.1_519956_520889_-	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold	NA|298aa|up_0|NZ_CP009238.1_521015_521909_+	PRK09432, metF, methylenetetrahydrofolate reductase	NA|757aa|down_0|NZ_CP009238.1_522850_525121_+	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|48aa|down_1|NZ_CP009238.1_525284_525428_+	NA	NA|151aa|down_2|NZ_CP009238.1_525518_525971_+	PRK00326, PRK00326, transcriptional regulator MraZ	NA|330aa|down_3|NZ_CP009238.1_525980_526970_+	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA|96aa|down_4|NZ_CP009238.1_526966_527254_+	TIGR02209, Cell_division_protein_FtsL, cell division protein FtsL	NA|588aa|down_5|NZ_CP009238.1_527263_529027_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|896aa|down_6|NZ_CP009238.1_529059_531747_+	PRK11929, PRK11929, bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA|389aa|down_7|NZ_CP009238.1_531750_532917_+	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	NA|504aa|down_8|NZ_CP009238.1_532917_534429_+	PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional	NA|410aa|down_9|NZ_CP009238.1_534428_535658_+	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	8	572971-573108	8	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	TTTCCCCATGCATCTAACATCACTCGAATAAGTCACCCCAGACCGTCTCA	50	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA|72aa|up_1|NZ_CP009238.1_571640_571856_-,NA|264aa|down_8|NZ_CP009238.1_581276_582068_+	NA|498aa|up_9|NZ_CP009238.1_562116_563610_+	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG	NA|75aa|up_8|NZ_CP009238.1_563621_563846_+	COG3198, COG3198, Uncharacterized protein conserved in bacteria [Function unknown]	NA|254aa|up_7|NZ_CP009238.1_564267_565029_-	PRK11161, PRK11161, fumarate/nitrate reduction transcriptional regulator Fnr	NA|862aa|up_6|NZ_CP009238.1_565275_567861_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|322aa|up_5|NZ_CP009238.1_568129_569095_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|244aa|up_4|NZ_CP009238.1_569137_569869_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|142aa|up_3|NZ_CP009238.1_569884_570310_+	TIGR00810, secG, protein translocase, SecG subunit	NA|155aa|up_2|NZ_CP009238.1_571189_571654_-	COG5346, COG5346, Predicted membrane protein [Function unknown]	NA|72aa|up_1|NZ_CP009238.1_571640_571856_-	NA	NA|122aa|up_0|NZ_CP009238.1_572070_572436_-	pfam00892, EamA, EamA-like transporter family	NA|225aa|down_0|NZ_CP009238.1_573120_573795_-	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|318aa|down_1|NZ_CP009238.1_573787_574741_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|825aa|down_2|NZ_CP009238.1_574864_577339_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|199aa|down_3|NZ_CP009238.1_577328_577925_+	PRK00031, lolA, outer membrane lipoprotein chaperone LolA	NA|467aa|down_4|NZ_CP009238.1_577924_579325_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|75aa|down_5|NZ_CP009238.1_579952_580177_+	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]	NA|82aa|down_6|NZ_CP009238.1_580517_580763_+	pfam04964, Flp_Fap, Flp/Fap pilin component	NA|149aa|down_7|NZ_CP009238.1_580793_581240_+	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|264aa|down_8|NZ_CP009238.1_581276_582068_+	NA	NA|475aa|down_9|NZ_CP009238.1_582069_583494_+	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	9	579315-579431	9	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	CTCCTCAGTGATATGGTTGTTTTAGCATGAG	31	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA|72aa|up_5|NZ_CP009238.1_571640_571856_-,NA|264aa|down_3|NZ_CP009238.1_581276_582068_+	NA|322aa|up_9|NZ_CP009238.1_568129_569095_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|244aa|up_8|NZ_CP009238.1_569137_569869_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|142aa|up_7|NZ_CP009238.1_569884_570310_+	TIGR00810, secG, protein translocase, SecG subunit	NA|155aa|up_6|NZ_CP009238.1_571189_571654_-	COG5346, COG5346, Predicted membrane protein [Function unknown]	NA|72aa|up_5|NZ_CP009238.1_571640_571856_-	NA	NA|122aa|up_4|NZ_CP009238.1_572070_572436_-	pfam00892, EamA, EamA-like transporter family	NA|225aa|up_3|NZ_CP009238.1_573120_573795_-	COG2840, COG2840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|318aa|up_2|NZ_CP009238.1_573787_574741_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|825aa|up_1|NZ_CP009238.1_574864_577339_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|199aa|up_0|NZ_CP009238.1_577328_577925_+	PRK00031, lolA, outer membrane lipoprotein chaperone LolA	NA|75aa|down_0|NZ_CP009238.1_579952_580177_+	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]	NA|82aa|down_1|NZ_CP009238.1_580517_580763_+	pfam04964, Flp_Fap, Flp/Fap pilin component	NA|149aa|down_2|NZ_CP009238.1_580793_581240_+	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|264aa|down_3|NZ_CP009238.1_581276_582068_+	NA	NA|475aa|down_4|NZ_CP009238.1_582069_583494_+	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]	NA|378aa|down_5|NZ_CP009238.1_583587_584721_+	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]	NA|429aa|down_6|NZ_CP009238.1_584739_586026_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|299aa|down_7|NZ_CP009238.1_586022_586919_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|283aa|down_8|NZ_CP009238.1_586941_587790_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|286aa|down_9|NZ_CP009238.1_587779_588637_+	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	10	616378-616489	10	CRISPRCasFinder	no	cas2	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Unclear	TGGGGATTTTGGGTGTTTTAAAGATC	26	0	0	NA	NA	NA	1	1	Unclear	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA|76aa|up_7|NZ_CP009238.1_609146_609374_+,NA	NA|227aa|up_9|NZ_CP009238.1_607648_608329_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|86aa|up_8|NZ_CP009238.1_608394_608652_-	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|76aa|up_7|NZ_CP009238.1_609146_609374_+	NA	NA|500aa|up_6|NZ_CP009238.1_609370_610870_-	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|379aa|up_5|NZ_CP009238.1_610996_612133_+	pfam03486, HI0933_like, HI0933-like protein	NA|337aa|up_4|NZ_CP009238.1_612263_613274_+	PRK10918, PRK10918, phosphate ABC transporter substrate-binding protein PstS	NA|335aa|up_3|NZ_CP009238.1_613249_614254_+	PRK11275, pstC, phosphate ABC transporter permease PstC	NA|279aa|up_2|NZ_CP009238.1_614265_615102_+	PRK11268, pstA, phosphate ABC transporter permease PstA	NA|261aa|up_1|NZ_CP009238.1_615110_615893_+	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB	NA|83aa|up_0|NZ_CP009238.1_616057_616306_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|63aa|down_0|NZ_CP009238.1_616716_616905_-	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]	NA|446aa|down_1|NZ_CP009238.1_616976_618314_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|531aa|down_2|NZ_CP009238.1_618324_619917_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|118aa|down_3|NZ_CP009238.1_620071_620425_+	pfam02627, CMD, Carboxymuconolactone decarboxylase family	NA|106aa|down_4|NZ_CP009238.1_620427_620745_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|228aa|down_5|NZ_CP009238.1_620798_621482_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	cas2|70aa|down_6|NZ_CP009238.1_621610_621820_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|240aa|down_7|NZ_CP009238.1_622087_622807_+	pfam07922, Glyco_transf_52, Glycosyltransferase family 52	NA|92aa|down_8|NZ_CP009238.1_622803_623079_+	pfam07922, Glyco_transf_52, Glycosyltransferase family 52	NA|564aa|down_9|NZ_CP009238.1_623494_625186_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	11	624719-624823	11	CRISPRCasFinder	no	cas2	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Unclear	GCTAAAGTGAAGCAGGGTTTTGAGTTGAAAACGGTT	36	0	0	NA	NA	NA	1	1	Unclear	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA,NA|176aa|down_0|NZ_CP009238.1_625554_626082_-,NA|412aa|down_2|NZ_CP009238.1_627878_629114_-	NA|83aa|up_9|NZ_CP009238.1_616057_616306_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|63aa|up_8|NZ_CP009238.1_616716_616905_-	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]	NA|446aa|up_7|NZ_CP009238.1_616976_618314_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|531aa|up_6|NZ_CP009238.1_618324_619917_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|118aa|up_5|NZ_CP009238.1_620071_620425_+	pfam02627, CMD, Carboxymuconolactone decarboxylase family	NA|106aa|up_4|NZ_CP009238.1_620427_620745_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|228aa|up_3|NZ_CP009238.1_620798_621482_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	cas2|70aa|up_2|NZ_CP009238.1_621610_621820_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|240aa|up_1|NZ_CP009238.1_622087_622807_+	pfam07922, Glyco_transf_52, Glycosyltransferase family 52	NA|92aa|up_0|NZ_CP009238.1_622803_623079_+	pfam07922, Glyco_transf_52, Glycosyltransferase family 52	NA|176aa|down_0|NZ_CP009238.1_625554_626082_-	NA	NA|522aa|down_1|NZ_CP009238.1_626246_627812_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|412aa|down_2|NZ_CP009238.1_627878_629114_-	NA	NA|273aa|down_3|NZ_CP009238.1_629552_630371_-	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed	NA|95aa|down_4|NZ_CP009238.1_630646_630931_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|546aa|down_5|NZ_CP009238.1_630976_632614_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|162aa|down_6|NZ_CP009238.1_633101_633587_+	PRK05412, PRK05412, putative nucleotide-binding protein; Reviewed	NA|596aa|down_7|NZ_CP009238.1_633588_635376_+	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|588aa|down_8|NZ_CP009238.1_635393_637157_+	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|693aa|down_9|NZ_CP009238.1_637205_639284_+	pfam05860, Haemagg_act, haemagglutination activity domain
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	12	674481-676099	1,12,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Unclear	ATTGTAGCATTACGAGATGAGAGAGGAAACTACAAC,ATTGTAGCATTACGAGATGAGAGAGGAAACTACAAC,ATTGTAGCATTACGAGATGAGAGAGGAAACTACAAC	36,36,36	0	0	NA	NA	NA:NA:NA	23,24,24	24	Unclear	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA,NA|166aa|down_4|NZ_CP009238.1_678614_679112_+	NA|1335aa|up_9|NZ_CP009238.1_648181_652186_+	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional	NA|488aa|up_8|NZ_CP009238.1_652291_653755_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|528aa|up_7|NZ_CP009238.1_653765_655349_+	PRK00074, guaA, GMP synthase; Reviewed	NA|213aa|up_6|NZ_CP009238.1_655518_656157_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|346aa|up_5|NZ_CP009238.1_656166_657204_+	COG3258, COG3258, Cytochrome c [Energy production and conversion]	NA|480aa|up_4|NZ_CP009238.1_657823_659263_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|469aa|up_3|NZ_CP009238.1_659759_661166_+	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters	NA|489aa|up_2|NZ_CP009238.1_661308_662775_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas1|303aa|up_1|NZ_CP009238.1_673188_674097_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|109aa|up_0|NZ_CP009238.1_674089_674416_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|96aa|down_0|NZ_CP009238.1_676200_676488_-	cd14861, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like	NA|371aa|down_1|NZ_CP009238.1_676513_677626_-	pfam09843, DUF2070, Predicted membrane protein (DUF2070)	NA|107aa|down_2|NZ_CP009238.1_677685_678006_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|86aa|down_3|NZ_CP009238.1_678355_678613_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|166aa|down_4|NZ_CP009238.1_678614_679112_+	NA	NA|86aa|down_5|NZ_CP009238.1_679534_679792_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|527aa|down_6|NZ_CP009238.1_679964_681545_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|269aa|down_7|NZ_CP009238.1_682059_682866_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|285aa|down_8|NZ_CP009238.1_682852_683707_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|507aa|down_9|NZ_CP009238.1_683690_685211_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	13	689185-689452	2	PILER-CR	no	cas1,cas2	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Unclear	GTCCACTAGCATGACCTTGATCAGCAGCGAGTTTGTAGTATTTAAAGGCTTG	52	0	0	NA	NA	NA	2	2	Unclear	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA|166aa|up_9|NZ_CP009238.1_678614_679112_+,NA|92aa|down_5|NZ_CP009238.1_696156_696432_+	NA|166aa|up_9|NZ_CP009238.1_678614_679112_+	NA	NA|86aa|up_8|NZ_CP009238.1_679534_679792_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|527aa|up_7|NZ_CP009238.1_679964_681545_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|269aa|up_6|NZ_CP009238.1_682059_682866_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|285aa|up_5|NZ_CP009238.1_682852_683707_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|507aa|up_4|NZ_CP009238.1_683690_685211_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|81aa|up_3|NZ_CP009238.1_685225_685468_-	smart00894, Excalibur, Excalibur calcium-binding domain	NA|131aa|up_2|NZ_CP009238.1_685962_686355_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|606aa|up_1|NZ_CP009238.1_686606_688424_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|140aa|up_0|NZ_CP009238.1_688489_688909_-	sd00010, SLR, Sel1-like repeat	NA|415aa|down_0|NZ_CP009238.1_690094_691339_-	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|127aa|down_1|NZ_CP009238.1_691341_691722_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|296aa|down_2|NZ_CP009238.1_691803_692691_-	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|366aa|down_3|NZ_CP009238.1_693078_694177_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|498aa|down_4|NZ_CP009238.1_694180_695674_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|92aa|down_5|NZ_CP009238.1_696156_696432_+	NA	NA|398aa|down_6|NZ_CP009238.1_696431_697625_+	pfam13400, Tad, Putative Flp pilus-assembly TadE/G-like	NA|209aa|down_7|NZ_CP009238.1_698089_698716_+	pfam07811, TadE, TadE-like protein	NA|296aa|down_8|NZ_CP009238.1_698712_699600_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|451aa|down_9|NZ_CP009238.1_699599_700952_+	pfam00263, Secretin, Bacterial type II and III secretion system protein
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	14	758882-758986	13	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	CCAAGTAAACGAAACCGTTGATGTAGTGGAAACGCCTGT	39	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA|122aa|up_4|NZ_CP009238.1_755317_755683_+,NA	NA|364aa|up_9|NZ_CP009238.1_750388_751480_+	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|369aa|up_8|NZ_CP009238.1_751493_752600_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|262aa|up_7|NZ_CP009238.1_752593_753379_+	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|314aa|up_6|NZ_CP009238.1_753368_754310_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|193aa|up_5|NZ_CP009238.1_754306_754885_+	pfam03886, ABC_trans_aux, ABC-type transport auxiliary lipoprotein component	NA|122aa|up_4|NZ_CP009238.1_755317_755683_+	NA	NA|111aa|up_3|NZ_CP009238.1_755624_755957_-	COG2878, COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]	NA|397aa|up_2|NZ_CP009238.1_756049_757240_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|167aa|up_1|NZ_CP009238.1_757426_757927_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|186aa|up_0|NZ_CP009238.1_757923_758481_-	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|155aa|down_0|NZ_CP009238.1_760006_760471_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|375aa|down_1|NZ_CP009238.1_760568_761693_+	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|173aa|down_2|NZ_CP009238.1_761696_762215_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|152aa|down_3|NZ_CP009238.1_762211_762667_+	PRK00202, nusB, transcription antitermination factor NusB	NA|310aa|down_4|NZ_CP009238.1_762670_763600_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|174aa|down_5|NZ_CP009238.1_763610_764132_+	pfam04608, PgpA, Phosphatidylglycerophosphatase A	NA|168aa|down_6|NZ_CP009238.1_764128_764632_+	pfam02464, CinA, Competence-damaged protein	NA|620aa|down_7|NZ_CP009238.1_766484_768344_+	PRK11054, helD, DNA helicase IV; Provisional	NA|175aa|down_8|NZ_CP009238.1_768848_769373_-	PRK00376, lspA, lipoprotein signal peptidase	NA|953aa|down_9|NZ_CP009238.1_769491_772350_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	15	861594-861687	14	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	GTGTTTTATGTGTGATGTATGGTG	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA|81aa|up_8|NZ_CP009238.1_850356_850599_+,NA	NA|337aa|up_9|NZ_CP009238.1_849343_850354_+	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily	NA|81aa|up_8|NZ_CP009238.1_850356_850599_+	NA	NA|371aa|up_7|NZ_CP009238.1_850846_851959_+	PRK08247, PRK08247, methionine biosynthesis PLP-dependent protein	NA|564aa|up_6|NZ_CP009238.1_852373_854065_-	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|265aa|up_5|NZ_CP009238.1_854052_854847_-	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|422aa|up_4|NZ_CP009238.1_854881_856147_+	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|229aa|up_3|NZ_CP009238.1_856139_856826_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|358aa|up_2|NZ_CP009238.1_857105_858179_+	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|125aa|up_1|NZ_CP009238.1_858209_858584_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|953aa|up_0|NZ_CP009238.1_858604_861463_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|288aa|down_0|NZ_CP009238.1_861736_862600_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|297aa|down_1|NZ_CP009238.1_863208_864099_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|454aa|down_2|NZ_CP009238.1_864415_865777_-	COG2056, COG2056, Predicted permease [General function prediction only]	NA|599aa|down_3|NZ_CP009238.1_865896_867693_-	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]	NA|133aa|down_4|NZ_CP009238.1_867940_868339_+	pfam03899, ATP-synt_I, ATP synthase I chain	NA|297aa|down_5|NZ_CP009238.1_868366_869257_+	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|74aa|down_6|NZ_CP009238.1_869371_869593_+	PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated	NA|157aa|down_7|NZ_CP009238.1_869744_870215_+	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated	NA|181aa|down_8|NZ_CP009238.1_870227_870770_+	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated	NA|512aa|down_9|NZ_CP009238.1_870803_872339_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	16	925389-925483	15	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	CCAAGATCTGATTCACTTTTTGGTGAGCT	29	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA,NA	NA|791aa|up_9|NZ_CP009238.1_913966_916339_+	TIGR00361, Recombination_protein_2, DNA internalization-related competence protein ComEC/Rec2	NA|279aa|up_8|NZ_CP009238.1_916349_917186_+	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|161aa|up_7|NZ_CP009238.1_917178_917661_+	PRK01885, greB, transcription elongation factor GreB; Reviewed	NA|255aa|up_6|NZ_CP009238.1_917663_918428_+	PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional	NA|279aa|up_5|NZ_CP009238.1_918420_919257_+	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|640aa|up_4|NZ_CP009238.1_919305_921225_+	PRK10788, PRK10788, periplasmic folding chaperone; Provisional	NA|743aa|up_3|NZ_CP009238.1_921518_923747_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|69aa|up_2|NZ_CP009238.1_923770_923977_-	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|207aa|up_1|NZ_CP009238.1_923994_924615_-	PRK00300, gmk, guanylate kinase; Provisional	NA|219aa|up_0|NZ_CP009238.1_924713_925370_+	PRK10847, PRK10847, DedA family protein	NA|302aa|down_0|NZ_CP009238.1_925788_926694_-	PRK11820, PRK11820, YicC family protein	NA|241aa|down_1|NZ_CP009238.1_926770_927493_+	PRK00173, rph, ribonuclease PH; Reviewed	NA|203aa|down_2|NZ_CP009238.1_927492_928101_+	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|415aa|down_3|NZ_CP009238.1_928087_929332_+	PRK08898, PRK08898, oxygen-independent coproporphyrinogen III oxidase-like protein	NA|552aa|down_4|NZ_CP009238.1_929370_931026_-	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|418aa|down_5|NZ_CP009238.1_931047_932301_-	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|267aa|down_6|NZ_CP009238.1_932276_933077_-	pfam04305, DUF455, Protein of unknown function (DUF455)	NA|650aa|down_7|NZ_CP009238.1_933412_935362_+	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|258aa|down_8|NZ_CP009238.1_935367_936141_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|788aa|down_9|NZ_CP009238.1_936162_938526_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	17	1271239-1272857	3,16,2	PILER-CR,CRISPRCasFinder,CRT	no	csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Type III-A	AGAATAGACTCCCTGATTGCAAAGGGATTCGGATAC,AGAATAGACTCCCTGATTGCAAAGGGATTCGGATAC,AGAATAGACTCCCTGATTGCAAAGGGATTCGGATACN	36,36,37	0	0	NA	NA	NA:NA:NA	23,23,24	24	TypeIII-A	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA|132aa|up_3|NZ_CP009238.1_1266539_1266935_-,NA|65aa|down_0|NZ_CP009238.1_1273128_1273323_+,NA|74aa|down_1|NZ_CP009238.1_1273586_1273808_+	csx16|102aa|up_9|NZ_CP009238.1_1259512_1259818_-	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	cas6|311aa|up_8|NZ_CP009238.1_1259875_1260808_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	csm5gr7|540aa|up_7|NZ_CP009238.1_1260809_1262429_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|318aa|up_6|NZ_CP009238.1_1262441_1263395_-	TIGR01903, Hypothetical_protein	csm3gr7|234aa|up_5|NZ_CP009238.1_1263414_1264116_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|131aa|up_4|NZ_CP009238.1_1264146_1264539_-	pfam03750, Csm2_III-A, Csm2 Type III-A	NA|132aa|up_3|NZ_CP009238.1_1266539_1266935_-	NA	NA|350aa|up_2|NZ_CP009238.1_1267323_1268373_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|581aa|up_1|NZ_CP009238.1_1268683_1270426_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|185aa|up_0|NZ_CP009238.1_1270496_1271051_+	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed	NA|65aa|down_0|NZ_CP009238.1_1273128_1273323_+	NA	NA|74aa|down_1|NZ_CP009238.1_1273586_1273808_+	NA	NA|135aa|down_2|NZ_CP009238.1_1274228_1274633_+	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|220aa|down_3|NZ_CP009238.1_1274634_1275294_+	TIGR02796, Protein_TolQ, TolQ protein	NA|142aa|down_4|NZ_CP009238.1_1275293_1275719_+	TIGR02801, Protein_TolR, TolR protein	NA|383aa|down_5|NZ_CP009238.1_1275729_1276878_+	TIGR02794, Protein_TolA, TolA protein	NA|411aa|down_6|NZ_CP009238.1_1276889_1278122_+	PRK02889, tolB, Tol-Pal system protein TolB	NA|164aa|down_7|NZ_CP009238.1_1278139_1278631_+	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein	NA|219aa|down_8|NZ_CP009238.1_1278642_1279299_+	TIGR02795, Uncharacterized_protein_in_oprL_3'region, tol-pal system protein YbgF	NA|274aa|down_9|NZ_CP009238.1_1279298_1280120_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	18	1298854-1298992	17	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	TTCGTTTAATGTTCACGTTTCCCATCATTCACATCTAGGT	40	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA,NA|200aa|down_8|NZ_CP009238.1_1311844_1312444_-,NA|58aa|down_9|NZ_CP009238.1_1312569_1312743_+	NA|469aa|up_9|NZ_CP009238.1_1286877_1288284_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|356aa|up_8|NZ_CP009238.1_1288407_1289475_-	PRK05382, PRK05382, chorismate synthase; Validated	NA|129aa|up_7|NZ_CP009238.1_1289464_1289851_-	pfam09842, DUF2069, Predicted membrane protein (DUF2069)	NA|401aa|up_6|NZ_CP009238.1_1289944_1291147_+	PRK01637, PRK01637, virulence factor BrkB family protein	NA|154aa|up_5|NZ_CP009238.1_1291148_1291610_+	cd04623, CBS_pair_bac_euk, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria and eukaryotes	NA|685aa|up_4|NZ_CP009238.1_1291777_1293832_-	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|377aa|up_3|NZ_CP009238.1_1294131_1295262_-	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism]	NA|313aa|up_2|NZ_CP009238.1_1295284_1296223_-	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily	NA|345aa|up_1|NZ_CP009238.1_1296240_1297275_-	cd14659, Imelysin-like_IPPA, Imelysin-like protein	NA|499aa|up_0|NZ_CP009238.1_1297271_1298768_-	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion]	NA|452aa|down_0|NZ_CP009238.1_1299086_1300442_-	cd14657, Imelysin_IrpA-like, Imelysin-like iron-regulated protein A-like	NA|409aa|down_1|NZ_CP009238.1_1300714_1301941_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|727aa|down_2|NZ_CP009238.1_1302195_1304376_+	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]	NA|268aa|down_3|NZ_CP009238.1_1304652_1305456_-	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|400aa|down_4|NZ_CP009238.1_1305452_1306652_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|361aa|down_5|NZ_CP009238.1_1306934_1308017_+	COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane]	NA|570aa|down_6|NZ_CP009238.1_1308243_1309953_-	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|268aa|down_7|NZ_CP009238.1_1310515_1311319_-	COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	NA|200aa|down_8|NZ_CP009238.1_1311844_1312444_-	NA	NA|58aa|down_9|NZ_CP009238.1_1312569_1312743_+	NA
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	19	1460125-1460266	18	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	CAACACACTCACACAAGCGTAAAACCTGCACGATCGTACAT	41	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA|187aa|up_9|NZ_CP009238.1_1451036_1451597_+,NA	NA|187aa|up_9|NZ_CP009238.1_1451036_1451597_+	NA	NA|463aa|up_8|NZ_CP009238.1_1451926_1453315_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|181aa|up_7|NZ_CP009238.1_1453801_1454344_+	cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|355aa|up_6|NZ_CP009238.1_1454343_1455408_+	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|272aa|up_5|NZ_CP009238.1_1455759_1456575_-	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|289aa|up_4|NZ_CP009238.1_1456602_1457469_-	pfam13145, Rotamase_2, PPIC-type PPIASE domain	NA|279aa|up_3|NZ_CP009238.1_1457481_1458318_-	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|89aa|up_2|NZ_CP009238.1_1458341_1458608_-	pfam01722, BolA, BolA-like protein	NA|129aa|up_1|NZ_CP009238.1_1458699_1459086_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|266aa|up_0|NZ_CP009238.1_1459140_1459938_+	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|694aa|down_0|NZ_CP009238.1_1460271_1462353_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|343aa|down_1|NZ_CP009238.1_1462349_1463378_-	smart00771, ZipA_C, ZipA, C-terminal domain (FtsZ-binding)	NA|1179aa|down_2|NZ_CP009238.1_1463380_1466917_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|439aa|down_3|NZ_CP009238.1_1466987_1468304_+	PRK11195, PRK11195, lysophospholipid transporter LplT; Provisional	NA|297aa|down_4|NZ_CP009238.1_1468303_1469194_+	PRK00283, xerD, tyrosine recombinase	NA|155aa|down_5|NZ_CP009238.1_1469222_1469687_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|461aa|down_6|NZ_CP009238.1_1469665_1471048_+	COG0860, AmiC, N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|604aa|down_7|NZ_CP009238.1_1471050_1472862_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|315aa|down_8|NZ_CP009238.1_1472858_1473803_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|158aa|down_9|NZ_CP009238.1_1474130_1474604_-	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	20	1794337-1794472	19	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	AGGCGGGTTTCAGGATATCAAACTAAACTCGCCACTGAT	39	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA|149aa|up_5|NZ_CP009238.1_1786570_1787017_-,NA|130aa|down_1|NZ_CP009238.1_1795674_1796064_-	NA|578aa|up_9|NZ_CP009238.1_1777180_1778914_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|299aa|up_8|NZ_CP009238.1_1779274_1780171_-	TIGR01413, Probable_deferrochelatase/peroxidase_EfeN, Dyp-type peroxidase family	NA|892aa|up_7|NZ_CP009238.1_1780383_1783059_+	TIGR03623, TIGR03623, probable DNA repair protein	NA|1149aa|up_6|NZ_CP009238.1_1783051_1786498_+	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	NA|149aa|up_5|NZ_CP009238.1_1786570_1787017_-	NA	NA|356aa|up_4|NZ_CP009238.1_1787077_1788145_-	pfam10093, EarP, Elongation-Factor P (EF-P) rhamnosyltransferase EarP	NA|397aa|up_3|NZ_CP009238.1_1788270_1789461_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|133aa|up_2|NZ_CP009238.1_1789472_1789871_-	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown]	NA|185aa|up_1|NZ_CP009238.1_1789947_1790502_-	PRK00529, PRK00529, elongation factor P; Validated	NA|543aa|up_0|NZ_CP009238.1_1790817_1792446_-	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|344aa|down_0|NZ_CP009238.1_1794633_1795665_-	PRK11891, PRK11891, aspartate carbamoyltransferase; Provisional	NA|130aa|down_1|NZ_CP009238.1_1795674_1796064_-	NA	NA|241aa|down_2|NZ_CP009238.1_1796066_1796789_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|369aa|down_3|NZ_CP009238.1_1796801_1797908_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|386aa|down_4|NZ_CP009238.1_1797907_1799065_-	COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|63aa|down_5|NZ_CP009238.1_1799256_1799445_+	pfam11943, DUF3460, Protein of unknown function (DUF3460)	NA|297aa|down_6|NZ_CP009238.1_1799441_1800332_+	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|366aa|down_7|NZ_CP009238.1_1800270_1801368_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|197aa|down_8|NZ_CP009238.1_1801432_1802023_-	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|295aa|down_9|NZ_CP009238.1_1802015_1802900_-	PRK00089, era, GTPase Era; Reviewed
GCF_000743945.1_ASM74394v1	NZ_CP009238	Basilea psittacipulmonis DSM 24701 chromosome, complete genome	21	1896090-1896179	20	CRISPRCasFinder	no		DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	Orphan	ATCTCACGCCAATGCTTTATCGTT	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csa3,cas3,csx1,csx16,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,DEDDh	NA,NA|226aa|down_1|NZ_CP009238.1_1897208_1897886_-	NA|82aa|up_9|NZ_CP009238.1_1884255_1884501_-	COG5007, COG5007, Predicted transcriptional regulator, BolA superfamily [Transcription]	NA|261aa|up_8|NZ_CP009238.1_1884521_1885304_-	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|260aa|up_7|NZ_CP009238.1_1885300_1886080_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|198aa|up_6|NZ_CP009238.1_1886076_1886670_-	pfam05494, MlaC, MlaC protein	NA|271aa|up_5|NZ_CP009238.1_1886691_1887504_-	pfam04333, MlaA, MlaA lipoprotein	NA|157aa|up_4|NZ_CP009238.1_1887503_1887974_-	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|259aa|up_3|NZ_CP009238.1_1887985_1888762_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|268aa|up_2|NZ_CP009238.1_1888758_1889562_-	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents	NA|489aa|up_1|NZ_CP009238.1_1889608_1891075_-	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|1561aa|up_0|NZ_CP009238.1_1891085_1895768_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|310aa|down_0|NZ_CP009238.1_1896276_1897206_+	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|226aa|down_1|NZ_CP009238.1_1897208_1897886_-	NA	NA|839aa|down_2|NZ_CP009238.1_1897914_1900431_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|246aa|down_3|NZ_CP009238.1_1900826_1901564_+	cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter	NA|232aa|down_4|NZ_CP009238.1_1901560_1902256_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|270aa|down_5|NZ_CP009238.1_1902278_1903088_+	cd13599, PBP2_lipoprotein_Gna1946, The membrane-associated lipoprotein Gna1946 from Neisseria meningitidis; the type 2 periplasmic binding protein fold	NA|205aa|down_6|NZ_CP009238.1_1903158_1903773_-	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_7|NZ_CP009238.1_1904318_1905104_+	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|464aa|down_8|NZ_CP009238.1_1905144_1906536_+	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]	NA|611aa|down_9|NZ_CP009238.1_1906597_1908430_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase
