assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000743055.1_ASM74305v1	NZ_CP009102	Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 13311 chromosome, complete genome	1	2822194-2822303	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	TTAAAAAAAGGTGGTACAGGGTGGGACA	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|198aa|up_4|NZ_CP009102.1_2816066_2816660_+,NA|276aa|up_2|NZ_CP009102.1_2818577_2819405_-,NA	NA|470aa|up_9|NZ_CP009102.1_2809416_2810826_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|727aa|up_8|NZ_CP009102.1_2810822_2813003_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|388aa|up_7|NZ_CP009102.1_2813010_2814174_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|355aa|up_6|NZ_CP009102.1_2814774_2815839_+	PRK09692, PRK09692, integrase; Provisional	NA|56aa|up_5|NZ_CP009102.1_2815852_2816020_+	PRK09692, PRK09692, integrase; Provisional	NA|198aa|up_4|NZ_CP009102.1_2816066_2816660_+	NA	NA|398aa|up_3|NZ_CP009102.1_2817049_2818243_+	pfam02810, SEC-C, SEC-C motif	NA|276aa|up_2|NZ_CP009102.1_2818577_2819405_-	NA	NA|72aa|up_1|NZ_CP009102.1_2819855_2820071_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|690aa|up_0|NZ_CP009102.1_2820106_2822176_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|428aa|down_0|NZ_CP009102.1_2822678_2823962_+	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|273aa|down_1|NZ_CP009102.1_2824006_2824825_+	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|119aa|down_2|NZ_CP009102.1_2824978_2825335_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|95aa|down_3|NZ_CP009102.1_2825429_2825714_+	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|174aa|down_4|NZ_CP009102.1_2825826_2826348_+	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|125aa|down_5|NZ_CP009102.1_2826344_2826719_+	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|327aa|down_6|NZ_CP009102.1_2826715_2827696_+	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|338aa|down_7|NZ_CP009102.1_2827706_2828720_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|401aa|down_8|NZ_CP009102.1_2829014_2830217_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|212aa|down_9|NZ_CP009102.1_2830290_2830926_-	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase
GCF_000743055.1_ASM74305v1	NZ_CP009102	Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 13311 chromosome, complete genome	2	3013211-3014930	2,1,1,2,3	CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	26,27,27,27,26	27	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP009102.1_3005077_3005839_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP009102.1_3005819_3006869_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP009102.1_3006865_3007345_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP009102.1_3007344_3008055_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP009102.1_3008073_3008385_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP009102.1_3008575_3008932_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP009102.1_3008949_3009555_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP009102.1_3009541_3010981_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP009102.1_3010990_3011899_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP009102.1_3012149_3013196_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP009102.1_3015026_3015320_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP009102.1_3015319_3016240_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP009102.1_3016236_3016887_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP009102.1_3016868_3017615_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP009102.1_3017625_3018684_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP009102.1_3018697_3019258_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP009102.1_3019254_3020811_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP009102.1_3020822_3023486_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP009102.1_3023930_3024884_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP009102.1_3024971_3025706_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000743055.1_ASM74305v1	NZ_CP009102	Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 13311 chromosome, complete genome	3	3031062-3032860	4,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	29,29,28	29	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	cas7|353aa|up_9|NZ_CP009102.1_3017625_3018684_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_8|NZ_CP009102.1_3018697_3019258_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP009102.1_3019254_3020811_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP009102.1_3020822_3023486_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP009102.1_3023930_3024884_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP009102.1_3024971_3025706_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP009102.1_3025781_3027494_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP009102.1_3027493_3029293_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP009102.1_3029716_3030079_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP009102.1_3030166_3030964_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP009102.1_3033156_3033828_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP009102.1_3033963_3035262_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP009102.1_3035344_3036982_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP009102.1_3037209_3038010_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|99aa|down_4|NZ_CP009102.1_3038777_3039074_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|119aa|down_5|NZ_CP009102.1_3039039_3039396_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|745aa|down_6|NZ_CP009102.1_3039479_3041714_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_7|NZ_CP009102.1_3041765_3043061_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_8|NZ_CP009102.1_3043118_3045875_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_9|NZ_CP009102.1_3045918_3047061_-	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
