assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000743015.1_ASM74301v1	NZ_CP008926	Streptococcus pyogenes strain ATCC 19615 chromosome, complete genome	1	16130-16219	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,csm6,cas9,cas1,cas2,csn2	Orphan	ATCCAAAGATGCTGTTGAAGTTTA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,csm6,cas9,cas1,cas2,csn2	NA,NA|105aa|down_9|NZ_CP008926.1_26603_26918_+	NA|419aa|up_9|NZ_CP008926.1_2323_3580_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|326aa|up_8|NZ_CP008926.1_3586_4564_+	pfam04245, NA37, 37-kD nucleoid-associated bacterial protein	NA|200aa|up_7|NZ_CP008926.1_4564_5164_+	pfam13702, Lysozyme_like, Lysozyme-like	NA|575aa|up_6|NZ_CP008926.1_5173_6898_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|576aa|up_5|NZ_CP008926.1_6894_8622_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|457aa|up_4|NZ_CP008926.1_8862_10233_+	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|328aa|up_3|NZ_CP008926.1_10392_11376_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|829aa|up_2|NZ_CP008926.1_11566_14053_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|250aa|up_1|NZ_CP008926.1_14072_14822_+	COG3764, SrtA, Sortase (surface protein transpeptidase) [Cell envelope biogenesis, outer membrane]	NA|138aa|up_0|NZ_CP008926.1_14904_15318_+	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein  Bacillus subtilis YwkD and similar proteins	NA|304aa|down_0|NZ_CP008926.1_16419_17331_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|217aa|down_1|NZ_CP008926.1_17447_18098_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|147aa|down_2|NZ_CP008926.1_18094_18535_-	pfam08876, DUF1836, Domain of unknown function (DUF1836)	NA|283aa|down_3|NZ_CP008926.1_18753_19602_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|264aa|down_4|NZ_CP008926.1_19591_20383_+	PRK00015, rnhB, ribonuclease HII; Validated	NA|279aa|down_5|NZ_CP008926.1_20447_21284_+	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|710aa|down_6|NZ_CP008926.1_21391_23521_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|449aa|down_7|NZ_CP008926.1_23655_25002_+	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|469aa|down_8|NZ_CP008926.1_25154_26561_+	PRK12581, PRK12581, oxaloacetate decarboxylase; Provisional	NA|105aa|down_9|NZ_CP008926.1_26603_26918_+	NA
GCF_000743015.1_ASM74301v1	NZ_CP008926	Streptococcus pyogenes strain ATCC 19615 chromosome, complete genome	2	116157-116258	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,csm6,cas9,cas1,cas2,csn2	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,csm6,cas9,cas1,cas2,csn2	NA,NA|262aa|down_6|NZ_CP008926.1_124088_124874_+	NA|83aa|up_9|NZ_CP008926.1_103873_104122_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_CP008926.1_104484_106803_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_CP008926.1_107332_108655_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_CP008926.1_108774_110010_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_CP008926.1_110379_111153_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_CP008926.1_111522_112359_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_CP008926.1_112374_113004_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_CP008926.1_113013_113655_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_CP008926.1_113760_114096_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_CP008926.1_114291_116106_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_CP008926.1_116281_116839_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_CP008926.1_117056_118559_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_CP008926.1_118621_119635_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_CP008926.1_119714_122825_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_CP008926.1_123009_123381_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_CP008926.1_123380_124079_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_CP008926.1_124088_124874_+	NA	NA|205aa|down_7|NZ_CP008926.1_125004_125619_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|207aa|down_8|NZ_CP008926.1_126359_126980_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NZ_CP008926.1_127236_129501_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCF_000743015.1_ASM74301v1	NZ_CP008926	Streptococcus pyogenes strain ATCC 19615 chromosome, complete genome	3	1782348-1782442	3	CRISPRCasFinder	no	cas9,cas1,cas2,csn2	cas3,DEDDh,csa3,DinG,csm6,cas9,cas1,cas2,csn2	Type II-C,Type II-B,Type II-A	GTTTTAGAGCTATGCTGTTTTGAATGGTC	29	0	0	NA	NA	II-A	1	1	TypeII-C,TypeII-B,TypeII-A	cas3,DEDDh,csa3,DinG,csm6,cas9,cas1,cas2,csn2	NA|214aa|up_8|NZ_CP008926.1_1771810_1772452_+,NA	NA|452aa|up_9|NZ_CP008926.1_1770331_1771687_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_CP008926.1_1771810_1772452_+	NA	NA|377aa|up_7|NZ_CP008926.1_1772514_1773645_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_CP008926.1_1773654_1774407_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_CP008926.1_1774406_1775171_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_CP008926.1_1775170_1775803_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1368aa|up_3|NZ_CP008926.1_1776282_1780386_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_CP008926.1_1780385_1781255_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_CP008926.1_1781251_1781593_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP008926.1_1781582_1782245_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|611aa|down_0|NZ_CP008926.1_1783092_1784925_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|146aa|down_1|NZ_CP008926.1_1786763_1787201_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_2|NZ_CP008926.1_1787330_1788350_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_3|NZ_CP008926.1_1788556_1788982_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_4|NZ_CP008926.1_1789000_1789492_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_5|NZ_CP008926.1_1789508_1790318_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_6|NZ_CP008926.1_1790314_1791142_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_7|NZ_CP008926.1_1791277_1792927_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_8|NZ_CP008926.1_1792930_1793719_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|349aa|down_9|NZ_CP008926.1_1793712_1794759_+	cd13546, PBP2_BitB, Substrate binding domain of a putative iron transporter BitB, a member of the type 2 periplasmic binding fold superfamily
