assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000742755.1_ASM74275v1	NZ_CP009208	Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1 chromosome, complete genome	1	383812-384388	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3,WYL,RT	Type I-E	GTCTTCCCCACATGCGTGGGGGTGTTTC,GTCTTCCCCACATGCGTGGGGGTGTTTC,GTCTTCCCCACATGCGTGGGGGTGTTTC	28,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	9,9,9	9	TypeI-E	DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3,WYL,RT	NA|79aa|up_3|NZ_CP009208.1_379309_379546_+,NA|372aa|down_8|NZ_CP009208.1_393901_395017_+	NA|411aa|up_9|NZ_CP009208.1_370741_371974_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|145aa|up_8|NZ_CP009208.1_372539_372974_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_7|NZ_CP009208.1_373089_374289_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|54aa|up_6|NZ_CP009208.1_375580_375742_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|717aa|up_5|NZ_CP009208.1_375784_377935_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|360aa|up_4|NZ_CP009208.1_378182_379262_-	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|79aa|up_3|NZ_CP009208.1_379309_379546_+	NA	NA|363aa|up_2|NZ_CP009208.1_379564_380653_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|NZ_CP009208.1_380726_382496_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NZ_CP009208.1_382488_383559_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|down_0|NZ_CP009208.1_384800_387416_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_1|NZ_CP009208.1_387419_388943_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_2|NZ_CP009208.1_388954_389521_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_3|NZ_CP009208.1_389513_390161_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|325aa|down_4|NZ_CP009208.1_390190_391165_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|down_5|NZ_CP009208.1_391237_391954_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|down_6|NZ_CP009208.1_391953_392829_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_7|NZ_CP009208.1_392806_393094_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_8|NZ_CP009208.1_393901_395017_+	NA	NA|228aa|down_9|NZ_CP009208.1_395027_395711_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)
GCF_000742755.1_ASM74275v1	NZ_CP009208	Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1 chromosome, complete genome	2	393142-393666	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3,WYL,RT	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTCT,GTCTTCCCCACGCACGTGGGGGTGTTTCT	28,29,29	2	2	393353-393385|393354-393385	NZ_CP009208.1_5338929-5338961|NZ_CP009208.1_5338930-5338961	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	7,8,8	8	TypeI-E	DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3,WYL,RT	NA,NA|372aa|down_0|NZ_CP009208.1_393901_395017_+	NA|590aa|up_9|NZ_CP009208.1_380726_382496_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NZ_CP009208.1_382488_383559_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|up_7|NZ_CP009208.1_384800_387416_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|NZ_CP009208.1_387419_388943_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_5|NZ_CP009208.1_388954_389521_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_4|NZ_CP009208.1_389513_390161_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|325aa|up_3|NZ_CP009208.1_390190_391165_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|up_2|NZ_CP009208.1_391237_391954_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|up_1|NZ_CP009208.1_391953_392829_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|NZ_CP009208.1_392806_393094_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|NZ_CP009208.1_393901_395017_+	NA	NA|228aa|down_1|NZ_CP009208.1_395027_395711_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_2|NZ_CP009208.1_395771_396143_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|252aa|down_3|NZ_CP009208.1_396644_397400_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_4|NZ_CP009208.1_397402_399187_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|447aa|down_5|NZ_CP009208.1_399197_400538_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_6|NZ_CP009208.1_400621_401245_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_7|NZ_CP009208.1_401241_401901_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_8|NZ_CP009208.1_401950_402688_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_9|NZ_CP009208.1_402684_402915_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_000742755.1_ASM74275v1	NZ_CP009208	Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1 chromosome, complete genome	3	1748411-1748495	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3,WYL,RT	Orphan	GCGGCGGCTGACGCCTTGCCCGGCCTACGG	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3,WYL,RT	NA|71aa|up_7|NZ_CP009208.1_1741588_1741801_+,NA	NA|366aa|up_9|NZ_CP009208.1_1737809_1738907_+	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|674aa|up_8|NZ_CP009208.1_1739155_1741177_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|71aa|up_7|NZ_CP009208.1_1741588_1741801_+	NA	NA|241aa|up_6|NZ_CP009208.1_1741887_1742610_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|241aa|up_5|NZ_CP009208.1_1742551_1743274_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_4|NZ_CP009208.1_1743266_1744022_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|386aa|up_3|NZ_CP009208.1_1744005_1745163_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_2|NZ_CP009208.1_1745159_1746200_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_1|NZ_CP009208.1_1746413_1747703_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_0|NZ_CP009208.1_1747773_1748250_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|461aa|down_0|NZ_CP009208.1_1749031_1750414_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|509aa|down_1|NZ_CP009208.1_1750512_1752039_-	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|313aa|down_2|NZ_CP009208.1_1752035_1752974_-	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|242aa|down_3|NZ_CP009208.1_1753866_1754592_-	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|319aa|down_4|NZ_CP009208.1_1754653_1755610_-	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|440aa|down_5|NZ_CP009208.1_1755606_1756926_-	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|426aa|down_6|NZ_CP009208.1_1757080_1758358_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|896aa|down_7|NZ_CP009208.1_1758631_1761319_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|144aa|down_8|NZ_CP009208.1_1761370_1761802_-	PRK15456, PRK15456, universal stress protein UspG; Provisional	NA|362aa|down_9|NZ_CP009208.1_1762335_1763421_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit
GCF_000742755.1_ASM74275v1	NZ_CP009208	Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1 chromosome, complete genome	4	2349833-2349965	4	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3,WYL,RT	Unclear	TGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3,WYL,RT	NA,NA	NA|428aa|up_9|NZ_CP009208.1_2339574_2340858_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|467aa|up_8|NZ_CP009208.1_2340993_2342394_+	PRK10197, PRK10197, GABA permease	NA|231aa|up_7|NZ_CP009208.1_2342439_2343132_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|133aa|up_6|NZ_CP009208.1_2343217_2343616_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|NZ_CP009208.1_2343673_2344918_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|NZ_CP009208.1_2345023_2345482_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|NZ_CP009208.1_2345739_2347197_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|NZ_CP009208.1_2347239_2347692_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|NZ_CP009208.1_2347694_2348750_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|NZ_CP009208.1_2348909_2349770_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|NZ_CP009208.1_2349992_2350208_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|NZ_CP009208.1_2350210_2351434_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|NZ_CP009208.1_2351446_2352043_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|NZ_CP009208.1_2352049_2352688_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|NZ_CP009208.1_2352680_2353475_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|NZ_CP009208.1_2353467_2354706_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|NZ_CP009208.1_2354709_2356053_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|247aa|down_7|NZ_CP009208.1_2356464_2357205_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_8|NZ_CP009208.1_2357175_2357943_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|194aa|down_9|NZ_CP009208.1_2358017_2358599_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase
GCF_000742755.1_ASM74275v1	NZ_CP009208	Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1 chromosome, complete genome	5	2566883-2566977	5	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3,WYL,RT	Orphan	ACTATGGTTTTTATGGTTTTTATT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csa3,WYL,RT	NA|57aa|up_8|NZ_CP009208.1_2553929_2554100_+,NA	NA|282aa|up_9|NZ_CP009208.1_2553098_2553944_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|57aa|up_8|NZ_CP009208.1_2553929_2554100_+	NA	NA|570aa|up_7|NZ_CP009208.1_2554281_2555991_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_6|NZ_CP009208.1_2556001_2557504_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|up_5|NZ_CP009208.1_2557641_2558337_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|786aa|up_4|NZ_CP009208.1_2558512_2560870_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|up_3|NZ_CP009208.1_2561057_2563964_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|up_2|NZ_CP009208.1_2563976_2564636_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|180aa|up_1|NZ_CP009208.1_2564710_2565250_-	TIGR03124, citrate_citX, holo-ACP synthase CitX	NA|455aa|up_0|NZ_CP009208.1_2565429_2566794_-	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|542aa|down_0|NZ_CP009208.1_2567118_2568744_+	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|233aa|down_1|NZ_CP009208.1_2568733_2569432_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|276aa|down_2|NZ_CP009208.1_2569464_2570292_-	PRK09430, djlA, co-chaperone DjlA	NA|783aa|down_3|NZ_CP009208.1_2570535_2572884_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_4|NZ_CP009208.1_2572938_2574225_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_5|NZ_CP009208.1_2574230_2575220_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_6|NZ_CP009208.1_2575216_2576038_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_7|NZ_CP009208.1_2576040_2576418_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|283aa|down_8|NZ_CP009208.1_2576422_2577271_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|down_9|NZ_CP009208.1_2577689_2578169_-	PRK10769, folA, type 3 dihydrofolate reductase
