The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	4411515	889040	947637	4411515	tRNA,bacteriocin,protease,transposase	Burkholderia_virus(16.67%)	54	NA	NA
WP_087902221.1|889040_890301_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009935676.1|890383_891478_+|transposase	IS110-like element IS1547 family transposase	transposase	NA	NA	NA	NA
WP_003404092.1|891467_892265_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003404098.1|892261_893269_-	Dyp-type peroxidase	NA	NA	NA	NA	NA
WP_003404103.1|893313_894615_+	M18 family aminopeptidase	NA	NA	NA	NA	NA
WP_003898592.1|894626_894974_+	VOC family protein	NA	NA	NA	NA	NA
WP_003404111.1|894967_895624_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003404114.1|895815_898080_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	64.3	8.1e-274
WP_003404117.1|898076_898706_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003404120.1|898826_899783_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_003898594.1|899727_901326_-	exopolysaccharide phosphotransferase CpsY	NA	NA	NA	NA	NA
WP_003404127.1|901630_902020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078801256.1|902106_903690_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.6	3.4e-45
WP_003404132.1|903720_904815_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	37.3	2.3e-56
WP_003404135.1|904900_905083_-	DUF3073 domain-containing protein	NA	NA	NA	NA	NA
WP_003404137.1|905229_906336_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_003404139.1|906418_907288_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_003898596.1|907333_908014_-	FABP family protein	NA	NA	NA	NA	NA
WP_003905391.1|908176_908479_-	DUF1416 domain-containing protein	NA	NA	NA	NA	NA
WP_003404293.1|908480_909314_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003898598.1|909606_910029_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_003404298.1|910025_910838_-	DUF2993 domain-containing protein	NA	NA	NA	NA	NA
WP_003898599.1|910967_911735_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.5	3.1e-15
WP_003404307.1|911731_912679_+	mycothiol synthase	NA	NA	NA	NA	NA
WP_003404312.1|912721_913498_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.1	1.6e-16
WP_003404314.1|913553_914195_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_003898600.1|914252_916307_-	LCP family protein	NA	NA	NA	NA	NA
WP_003901917.1|916472_917639_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003404321.1|917726_918743_-	acyl-ACP desaturase DesA1	NA	NA	NA	NA	NA
WP_003901918.1|918904_919546_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003898602.1|919626_920682_+	DUF2236 domain-containing protein	NA	NA	NA	NA	NA
WP_003404335.1|920733_921126_-	Ni(II)/Co(II)-sensing metalloregulatory transcriptional repressor KmtR	NA	NA	NA	NA	NA
WP_003404336.1|921183_921606_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_003900218.1|921567_921858_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003404349.1|921962_922868_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003404352.1|922886_923702_-	TIGR04255 family protein	NA	NA	NA	NA	NA
WP_010886090.1|927829_930478_-	PE family protein	NA	NA	NA	NA	NA
WP_003404362.1|930945_931590_+	sensor domain-containing protein	NA	NA	NA	NA	NA
WP_003898607.1|931570_932122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010950453.1|932202_932925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003404368.1|932995_934024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003898609.1|934712_935483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003404373.1|935569_936382_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003404376.1|936449_937310_-	proline-specific peptidase family protein	NA	NA	NA	NA	NA
WP_003404379.1|937585_937828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003404382.1|938104_939397_+	MFS transporter	NA	NA	NA	NA	NA
WP_003404384.1|939380_940385_+	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA	NA
WP_003901023.1|940448_941099_-	two-component system response regulator NarL	NA	NA	NA	NA	NA
WP_003901926.1|941182_942460_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003404392.1|942672_944187_-	multicopper oxidase MmcO	NA	NA	NA	NA	NA
WP_003901025.1|944335_944728_+	lipoprotein LpqS	NA	NA	NA	NA	NA
WP_003404395.1|944930_946049_+	S-sulfocysteine synthase CysK2	NA	NA	NA	NA	NA
WP_003404402.1|946048_947308_+	MFS transporter	NA	NA	NA	NA	NA
WP_003404404.1|947304_947637_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP009101	Mycobacterium tuberculosis strain ZMC13-88 chromosome, complete genome	4411515	2941210	2980839	4411515	capsid,terminase,tRNA,integrase,head,transposase,protease	Mycobacterium_phage(20.0%)	47	2970011:2970038	2980992:2981019
WP_003413486.1|2941210_2943289_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943397_2943625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943621_2945007_-	PE family protein	NA	NA	NA	NA	NA
WP_003912817.1|2945351_2945852_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945868_2946309_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946455_2947133_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2947117_2947471_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947483_2947909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901438.1|2947905_2948580_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948657_2949479_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949614_2950508_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950510_2951329_-	universal stress protein	NA	NA	NA	NA	NA
WP_038435936.1|2951343_2952525_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952583_2953015_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953528_2954770_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_078801237.1|2955079_2955442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003902322.1|2955788_2956913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956914_2957454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957593_2958892_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958930_2959212_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959356_2959842_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959868_2960126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2960126_2962463_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962491_2962734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962734_2963412_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963607_2964264_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964426_2964873_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2965047_2965380_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965499_2965859_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965960_2966419_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966554_2966935_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966931_2968428_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_003912823.1|2968662_2968854_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968926_2969100_+	hypothetical protein	NA	NA	NA	NA	NA
2970011:2970038	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970144_2970576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900539.1|2971583_2972048_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972180_2973441_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003901443.1|2973815_2975255_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975262_2975796_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975948_2976575_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003899414.1|2976606_2976930_-	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899415.1|2977009_2977255_-	type II toxin-antitoxin system antitoxin	NA	NA	NA	NA	NA
WP_003899416.1|2977251_2978679_-	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899417.1|2978680_2979073_-	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_003899418.1|2979069_2979330_-	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	64.6	3.0e-15
WP_003900543.1|2979346_2979709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899420.1|2979711_2980839_-|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
2980992:2981019	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
