The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	4411507	889090	947641	4411507	transposase,tRNA,protease,bacteriocin	Burkholderia_virus(16.67%)	53	NA	NA
WP_087902221.1|889090_890351_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009935676.1|890406_891501_+|transposase	IS110-like element IS1547 family transposase	transposase	NA	NA	NA	NA
WP_003404092.1|891490_892288_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003404098.1|892284_893292_-	Dyp-type peroxidase	NA	NA	NA	NA	NA
WP_003404103.1|893336_894638_+	M18 family aminopeptidase	NA	NA	NA	NA	NA
WP_003898592.1|894649_894997_+	VOC family protein	NA	NA	NA	NA	NA
WP_003404111.1|894990_895647_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003404114.1|895838_898103_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	64.3	8.1e-274
WP_003404117.1|898099_898729_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003404120.1|898849_899806_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_003898594.1|899750_901349_-	exopolysaccharide phosphotransferase CpsY	NA	NA	NA	NA	NA
WP_003404127.1|901653_902043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003901017.1|902129_903713_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.6	2.6e-45
WP_038435837.1|903743_904838_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	37.3	3.9e-56
WP_003404135.1|904923_905106_-	DUF3073 domain-containing protein	NA	NA	NA	NA	NA
WP_003404137.1|905252_906359_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_003898596.1|907355_908036_-	FABP family protein	NA	NA	NA	NA	NA
WP_003404278.1|908198_908501_-	DUF1416 domain-containing protein	NA	NA	NA	NA	NA
WP_003404293.1|908502_909336_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003898598.1|909628_910051_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_003404298.1|910047_910860_-	DUF2993 domain-containing protein	NA	NA	NA	NA	NA
WP_003898599.1|910989_911757_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.5	3.1e-15
WP_003404307.1|911753_912701_+	mycothiol synthase	NA	NA	NA	NA	NA
WP_003404312.1|912743_913520_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.1	1.6e-16
WP_003404314.1|913575_914217_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_003898600.1|914274_916329_-	LCP family protein	NA	NA	NA	NA	NA
WP_078801207.1|916494_917661_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003404321.1|917748_918765_-	acyl-ACP desaturase DesA1	NA	NA	NA	NA	NA
WP_038435839.1|918926_919568_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003898602.1|919648_920704_+	DUF2236 domain-containing protein	NA	NA	NA	NA	NA
WP_003404335.1|920755_921148_-	Ni(II)/Co(II)-sensing metalloregulatory transcriptional repressor KmtR	NA	NA	NA	NA	NA
WP_003404336.1|921205_921628_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_003900218.1|921589_921880_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003404349.1|921984_922890_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003404352.1|922908_923724_-	TIGR04255 family protein	NA	NA	NA	NA	NA
WP_031658840.1|927851_930482_-	PE family protein	NA	NA	NA	NA	NA
WP_003404362.1|930949_931594_+	sensor domain-containing protein	NA	NA	NA	NA	NA
WP_003898607.1|931574_932126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010950453.1|932206_932929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003404368.1|932999_934028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003898609.1|934716_935487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003404373.1|935573_936386_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_038435840.1|936453_937314_-	proline-specific peptidase family protein	NA	NA	NA	NA	NA
WP_003404379.1|937589_937832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003404382.1|938108_939401_+	MFS transporter	NA	NA	NA	NA	NA
WP_003404384.1|939384_940389_+	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA	NA
WP_003901023.1|940452_941103_-	two-component system response regulator NarL	NA	NA	NA	NA	NA
WP_003901926.1|941186_942464_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003404392.1|942676_944191_-	multicopper oxidase MmcO	NA	NA	NA	NA	NA
WP_003901025.1|944339_944732_+	lipoprotein LpqS	NA	NA	NA	NA	NA
WP_003404395.1|944934_946053_+	S-sulfocysteine synthase CysK2	NA	NA	NA	NA	NA
WP_003404402.1|946052_947312_+	MFS transporter	NA	NA	NA	NA	NA
WP_003404404.1|947308_947641_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	4411507	2941199	2980828	4411507	tRNA,terminase,transposase,integrase,protease,head,capsid	Mycobacterium_phage(20.0%)	48	2970000:2970027	2980981:2981008
WP_003413486.1|2941199_2943278_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943386_2943614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943610_2944996_-	PE family protein	NA	NA	NA	NA	NA
WP_003912817.1|2945340_2945841_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945857_2946298_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946444_2947122_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2947106_2947460_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947472_2947898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901438.1|2947894_2948569_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948646_2949468_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949603_2950497_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950499_2951318_-	universal stress protein	NA	NA	NA	NA	NA
WP_038435936.1|2951332_2952514_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952572_2953004_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953517_2954759_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_078801237.1|2955068_2955431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003902322.1|2955777_2956902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956903_2957443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957582_2958881_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958919_2959201_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959345_2959831_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959857_2960115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2960115_2962452_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962480_2962723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962723_2963401_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963596_2964253_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964415_2964862_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2965036_2965369_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965488_2965848_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965949_2966408_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966543_2966924_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966920_2968417_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_003912823.1|2968651_2968843_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968915_2969089_+	hypothetical protein	NA	NA	NA	NA	NA
2970000:2970027	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970133_2970565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900539.1|2971572_2972037_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972169_2973430_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009935348.1|2973457_2973643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901443.1|2973804_2975244_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975251_2975785_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975937_2976564_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003899414.1|2976595_2976919_-	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899415.1|2976998_2977244_-	type II toxin-antitoxin system antitoxin	NA	NA	NA	NA	NA
WP_003899416.1|2977240_2978668_-	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899417.1|2978669_2979062_-	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_003899418.1|2979058_2979319_-	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	64.6	3.0e-15
WP_003900543.1|2979335_2979698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899420.1|2979700_2980828_-|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
2980981:2981008	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
