assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	1	338167-338389	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP009100.1_333218_333401_-,NA	NA|561aa|up_9|NZ_CP009100.1_324625_326308_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP009100.1_326324_328520_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP009100.1_328633_329767_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP009100.1_329763_330384_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP009100.1_330480_331062_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP009100.1_330991_331717_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP009100.1_331806_332727_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP009100.1_332766_333195_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP009100.1_333218_333401_-	NA	NA|958aa|up_0|NZ_CP009100.1_333495_336369_-	pfam00934, PE, PE family	NA|538aa|down_0|NZ_CP009100.1_339408_341022_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP009100.1_341045_341954_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP009100.1_342177_344073_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP009100.1_344069_345686_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP009100.1_345682_349675_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP009100.1_349671_349980_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP009100.1_349982_351524_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP009100.1_351572_351866_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP009100.1_351895_352186_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP009100.1_352196_353084_+	pfam14011, ESX-1_EspG, EspG family
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	2	366511-367209	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366799-366840|366874-366906	NZ_CP009100.1_374830-374871|NZ_CP009100.1_373645-373677	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP009100.1_363523_363826_+,NA|161aa|down_1|NZ_CP009100.1_376619_377102_-,NA|410aa|down_5|NZ_CP009100.1_379218_380448_+	NA|262aa|up_9|NZ_CP009100.1_358218_359004_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP009100.1_358992_359796_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP009100.1_359805_361203_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP009100.1_361381_363157_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP009100.1_363299_363527_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP009100.1_363523_363826_+	NA	NA|74aa|up_3|NZ_CP009100.1_363873_364095_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP009100.1_364091_364517_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP009100.1_364652_365285_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP009100.1_365281_366190_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP009100.1_375960_376632_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP009100.1_376619_377102_-	NA	NA|239aa|down_2|NZ_CP009100.1_377159_377876_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP009100.1_377977_378634_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP009100.1_378703_379195_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP009100.1_379218_380448_+	NA	NA|621aa|down_6|NZ_CP009100.1_380602_382465_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP009100.1_382536_382923_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP009100.1_382925_383588_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP009100.1_383648_384533_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	3	692048-692124	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP009100.1_677730_677946_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP009100.1_677942_678350_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP009100.1_678409_679096_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP009100.1_679249_681883_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|241aa|up_5|NZ_CP009100.1_684431_685154_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP009100.1_685150_685948_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP009100.1_685949_686837_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP009100.1_686842_688057_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_CP009100.1_688053_689085_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_CP009100.1_689081_690527_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP009100.1_693259_694810_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP009100.1_694861_695254_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP009100.1_695250_695508_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP009100.1_695690_696926_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP009100.1_697176_697590_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP009100.1_697586_697823_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP009100.1_697926_698433_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP009100.1_698546_699017_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP009100.1_699060_699822_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP009100.1_699878_700190_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	4	926635-927582	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGNGCCGGCGGNNCCGGCGG	21	1	3	927418-927453|927418-927453|927418-927453	NZ_CP009100.1_675147-675112|NZ_CP009100.1_1213717-1213752|NZ_CP009100.1_2423786-2423751	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP009100.1_931574_932126_-,NA|81aa|down_8|NZ_CP009100.1_937589_937832_+	NA|685aa|up_9|NZ_CP009100.1_914274_916329_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|389aa|up_8|NZ_CP009100.1_916494_917661_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP009100.1_917748_918765_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP009100.1_918926_919568_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP009100.1_919648_920704_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP009100.1_920755_921148_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP009100.1_921205_921628_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP009100.1_921589_921880_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP009100.1_921984_922890_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP009100.1_922908_923724_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|877aa|down_0|NZ_CP009100.1_927851_930482_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP009100.1_930949_931594_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP009100.1_931574_932126_-	NA	NA|241aa|down_3|NZ_CP009100.1_932206_932929_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP009100.1_932999_934028_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP009100.1_934716_935487_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP009100.1_935573_936386_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP009100.1_936453_937314_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP009100.1_937589_937832_+	NA	NA|431aa|down_9|NZ_CP009100.1_938108_939401_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	5	1191284-1191392	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP009100.1_1180651_1182283_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP009100.1_1182358_1183423_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP009100.1_1183475_1183949_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP009100.1_1183982_1184846_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP009100.1_1184850_1185708_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP009100.1_1185708_1186791_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP009100.1_1186871_1187291_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP009100.1_1187402_1187969_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP009100.1_1187965_1188361_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP009100.1_1188388_1190392_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP009100.1_1192477_1194241_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP009100.1_1194237_1195011_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP009100.1_1195022_1196060_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP009100.1_1196246_1197083_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP009100.1_1197198_1198050_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP009100.1_1198123_1199341_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP009100.1_1199393_1200338_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP009100.1_1200560_1201628_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP009100.1_1201684_1203079_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP009100.1_1203280_1204003_+	pfam06271, RDD, RDD family
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	6	1211918-1212774	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	74	1212301-1212322|1212346-1212361|1212484-1212505|1212484-1212505|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619|1212601-1212619	NZ_CP009100.1_2960569-2960548|NZ_CP009100.1_2088611-2088596|NZ_CP009100.1_837450-837471|NZ_CP009100.1_1217611-1217632|NZ_CP009100.1_674811-674793|NZ_CP009100.1_840512-840530|NZ_CP009100.1_1213444-1213462|NZ_CP009100.1_1217584-1217602|NZ_CP009100.1_1217656-1217674|NZ_CP009100.1_1630678-1630660|NZ_CP009100.1_1633504-1633486|NZ_CP009100.1_1990813-1990795|NZ_CP009100.1_2061539-2061521|NZ_CP009100.1_2061986-2061968|NZ_CP009100.1_2062085-2062067|NZ_CP009100.1_2802142-2802124|NZ_CP009100.1_2805670-2805652|NZ_CP009100.1_150238-150256|NZ_CP009100.1_333841-333823|NZ_CP009100.1_335260-335242|NZ_CP009100.1_335713-335695|NZ_CP009100.1_335764-335746|NZ_CP009100.1_335773-335755|NZ_CP009100.1_338066-338048|NZ_CP009100.1_338462-338444|NZ_CP009100.1_338491-338509|NZ_CP009100.1_338585-338567|NZ_CP009100.1_363101-363083|NZ_CP009100.1_443464-443446|NZ_CP009100.1_546804-546786|NZ_CP009100.1_623997-624015|NZ_CP009100.1_624219-624237|NZ_CP009100.1_673977-673959|NZ_CP009100.1_840233-840251|NZ_CP009100.1_1090947-1090965|NZ_CP009100.1_1091595-1091613|NZ_CP009100.1_1095653-1095635|NZ_CP009100.1_1212973-1212991|NZ_CP009100.1_1213363-1213381|NZ_CP009100.1_1218004-1218022|NZ_CP009100.1_1489177-1489159|NZ_CP009100.1_1618639-1618621|NZ_CP009100.1_1619092-1619074|NZ_CP009100.1_1636017-1635999|NZ_CP009100.1_1636026-1636008|NZ_CP009100.1_1864304-1864286|NZ_CP009100.1_1864832-1864814|NZ_CP009100.1_1990087-1990069|NZ_CP009100.1_2001449-2001467|NZ_CP009100.1_2088809-2088791|NZ_CP009100.1_2303507-2303489|NZ_CP009100.1_2356961-2356943|NZ_CP009100.1_2419608-2419626|NZ_CP009100.1_2423699-2423681|NZ_CP009100.1_2569218-2569200|NZ_CP009100.1_2693522-2693540|NZ_CP009100.1_2795457-2795439|NZ_CP009100.1_2796039-2796021|NZ_CP009100.1_3054603-3054621|NZ_CP009100.1_3054702-3054720|NZ_CP009100.1_3705512-3705530|NZ_CP009100.1_3737489-3737471|NZ_CP009100.1_3738113-3738095|NZ_CP009100.1_3738356-3738338|NZ_CP009100.1_3738489-3738471|NZ_CP009100.1_3802343-3802361|NZ_CP009100.1_3802526-3802544|NZ_CP009100.1_3802694-3802712|NZ_CP009100.1_3930502-3930520|NZ_CP009100.1_3932232-3932250|NZ_CP009100.1_3940739-3940757|NZ_CP009100.1_3948734-3948752|NZ_CP009100.1_4031716-4031698|NZ_CP009100.1_4094243-4094261	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP009100.1_1207350_1207617_+,NA|61aa|down_3|NZ_CP009100.1_1215191_1215374_+,NA|35aa|down_4|NZ_CP009100.1_1215483_1215588_+	NA|465aa|up_9|NZ_CP009100.1_1201684_1203079_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP009100.1_1203280_1204003_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP009100.1_1204034_1205201_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP009100.1_1205271_1205766_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP009100.1_1205951_1206386_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP009100.1_1206487_1207354_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP009100.1_1207350_1207617_+	NA	NA|674aa|up_2|NZ_CP009100.1_1207603_1209625_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP009100.1_1209723_1210452_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP009100.1_1210562_1211351_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP009100.1_1214007_1214328_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP009100.1_1214480_1214915_+	pfam00934, PE, PE family	NA|83aa|down_2|NZ_CP009100.1_1214931_1215180_+	pfam00553, CBM_2, Cellulose binding domain	NA|61aa|down_3|NZ_CP009100.1_1215191_1215374_+	NA	NA|35aa|down_4|NZ_CP009100.1_1215483_1215588_+	NA	NA|152aa|down_5|NZ_CP009100.1_1215565_1216021_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP009100.1_1216435_1218997_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP009100.1_1219214_1220153_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP009100.1_1220540_1221821_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP009100.1_1221925_1222753_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	7	1572162-1573234	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP009100.1_1563925_1564243_+,NA	NA|103aa|up_9|NZ_CP009100.1_1561440_1561749_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP009100.1_1561745_1563365_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP009100.1_1563925_1564243_+	NA	NA|209aa|up_6|NZ_CP009100.1_1564377_1565004_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP009100.1_1565069_1565402_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP009100.1_1565417_1566674_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP009100.1_1566801_1568013_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP009100.1_1568085_1569564_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP009100.1_1569560_1570946_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP009100.1_1571023_1572058_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP009100.1_1574088_1574490_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP009100.1_1574486_1574744_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP009100.1_1574826_1575786_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP009100.1_1575810_1576773_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP009100.1_1576906_1577509_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP009100.1_1577589_1579557_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP009100.1_1579574_1580399_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP009100.1_1580567_1581050_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP009100.1_1581121_1581946_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP009100.1_1582142_1583081_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	8	1618679-1618843	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCACCCGCGCCGCCGTTGCCGCCGTCGCCGCCA	33	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|46aa|up_7|NZ_CP009100.1_1612232_1612370_+,NA|76aa|up_2|NZ_CP009100.1_1616341_1616569_-,NA|38aa|down_2|NZ_CP009100.1_1623100_1623214_-,NA|137aa|down_3|NZ_CP009100.1_1623263_1623674_-	NA|474aa|up_9|NZ_CP009100.1_1609825_1611247_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_8|NZ_CP009100.1_1611410_1612226_+	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|46aa|up_7|NZ_CP009100.1_1612232_1612370_+	NA	NA|203aa|up_6|NZ_CP009100.1_1612318_1612927_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|340aa|up_5|NZ_CP009100.1_1613283_1614303_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|413aa|up_4|NZ_CP009100.1_1614305_1615544_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|262aa|up_3|NZ_CP009100.1_1615540_1616326_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|76aa|up_2|NZ_CP009100.1_1616341_1616569_-	NA	NA|142aa|up_1|NZ_CP009100.1_1616937_1617363_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|78aa|up_0|NZ_CP009100.1_1617813_1618047_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|767aa|down_0|NZ_CP009100.1_1619767_1622068_+	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|162aa|down_1|NZ_CP009100.1_1622183_1622669_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|down_2|NZ_CP009100.1_1623100_1623214_-	NA	NA|137aa|down_3|NZ_CP009100.1_1623263_1623674_-	NA	NA|248aa|down_4|NZ_CP009100.1_1623690_1624434_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|305aa|down_5|NZ_CP009100.1_1624430_1625345_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|down_6|NZ_CP009100.1_1625397_1626942_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|down_7|NZ_CP009100.1_1626938_1628060_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|down_8|NZ_CP009100.1_1628076_1630179_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1330aa|down_9|NZ_CP009100.1_1630617_1634607_-	pfam00934, PE, PE family
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	9	1636739-1637068	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	NGCCGCCGGCNCCGCCGN	18	0	0	NA	NA	NA	6	6	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP009100.1_1623100_1623214_-,NA|137aa|up_7|NZ_CP009100.1_1623263_1623674_-,NA|288aa|down_2|NZ_CP009100.1_1640659_1641523_+	NA|162aa|up_9|NZ_CP009100.1_1622183_1622669_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP009100.1_1623100_1623214_-	NA	NA|137aa|up_7|NZ_CP009100.1_1623263_1623674_-	NA	NA|248aa|up_6|NZ_CP009100.1_1623690_1624434_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|305aa|up_5|NZ_CP009100.1_1624430_1625345_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP009100.1_1625397_1626942_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP009100.1_1626938_1628060_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP009100.1_1628076_1630179_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1330aa|up_1|NZ_CP009100.1_1630617_1634607_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP009100.1_1635008_1635935_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP009100.1_1638360_1639626_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP009100.1_1639653_1640640_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP009100.1_1640659_1641523_+	NA	NA|311aa|down_3|NZ_CP009100.1_1641472_1642405_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP009100.1_1642516_1643302_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP009100.1_1643298_1644240_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP009100.1_1644342_1646118_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP009100.1_1646165_1646972_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP009100.1_1646968_1649509_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP009100.1_1649505_1650699_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	10	2088281-2088535	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088362-2088379|2088362-2088379|2088452-2088469	NZ_CP009100.1_401126-401109|NZ_CP009100.1_607452-607435|NZ_CP009100.1_3450210-3450193	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP009100.1_2087640_2087904_-,NA	NA|165aa|up_9|NZ_CP009100.1_2073934_2074429_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP009100.1_2074832_2075510_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP009100.1_2075868_2078694_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP009100.1_2078920_2079781_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP009100.1_2079821_2080688_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP009100.1_2080692_2082579_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP009100.1_2082594_2084628_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP009100.1_2084747_2086973_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP009100.1_2087248_2087644_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP009100.1_2087640_2087904_-	NA	NA|346aa|down_0|NZ_CP009100.1_2089672_2090710_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP009100.1_2090709_2092077_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP009100.1_2092250_2093687_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP009100.1_2093722_2095174_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP009100.1_2095203_2096154_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP009100.1_2096168_2096585_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP009100.1_2096862_2097285_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_CP009100.1_2097333_2097636_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP009100.1_2097632_2097947_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP009100.1_2097946_2099680_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	11	2168810-2169029	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP009100.1_2159915_2160323_-,NA|127aa|down_5|NZ_CP009100.1_2176545_2176926_-	NA|211aa|up_9|NZ_CP009100.1_2153244_2153877_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP009100.1_2153883_2156106_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP009100.1_2156143_2156587_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP009100.1_2156700_2157294_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP009100.1_2157376_2157982_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP009100.1_2158081_2159086_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP009100.1_2159185_2159938_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP009100.1_2159915_2160323_-	NA	NA|767aa|up_1|NZ_CP009100.1_2160457_2162758_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP009100.1_2162927_2167307_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP009100.1_2171056_2171521_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP009100.1_2171618_2172482_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP009100.1_2172519_2173791_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP009100.1_2174062_2175178_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP009100.1_2175168_2176509_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP009100.1_2176545_2176926_-	NA	NA|621aa|down_6|NZ_CP009100.1_2177082_2178945_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP009100.1_2178952_2179432_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP009100.1_2179668_2180442_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP009100.1_2180445_2181213_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	12	3119194-3120548	3,7,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-B,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP009100.1_3112473_3112728_-,NA|135aa|up_7|NZ_CP009100.1_3112875_3113280_+,NA|64aa|up_6|NZ_CP009100.1_3113276_3113468_+,NA|86aa|up_4|NZ_CP009100.1_3115054_3115312_+,NA|104aa|up_3|NZ_CP009100.1_3115416_3115728_+,NA|203aa|up_2|NZ_CP009100.1_3116147_3116756_+,NA	NA|92aa|up_9|NZ_CP009100.1_3112022_3112298_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP009100.1_3112473_3112728_-	NA	NA|135aa|up_7|NZ_CP009100.1_3112875_3113280_+	NA	NA|64aa|up_6|NZ_CP009100.1_3113276_3113468_+	NA	NA|385aa|up_5|NZ_CP009100.1_3113666_3114821_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP009100.1_3115054_3115312_+	NA	NA|104aa|up_3|NZ_CP009100.1_3115416_3115728_+	NA	NA|203aa|up_2|NZ_CP009100.1_3116147_3116756_+	NA	NA|470aa|up_1|NZ_CP009100.1_3116826_3118236_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP009100.1_3118232_3119045_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP009100.1_3120574_3121836_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP009100.1_3123632_3123974_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP009100.1_3123974_3124991_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP009100.1_3125003_3126152_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP009100.1_3126247_3127375_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP009100.1_3127371_3128280_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP009100.1_3128260_3128971_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP009100.1_3128980_3129355_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP009100.1_3129351_3131790_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP009100.1_3131786_3132509_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	13	3121871-3123584	8,5,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-B,Type III-C,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP009100.1_3112473_3112728_-,NA|135aa|up_8|NZ_CP009100.1_3112875_3113280_+,NA|64aa|up_7|NZ_CP009100.1_3113276_3113468_+,NA|86aa|up_5|NZ_CP009100.1_3115054_3115312_+,NA|104aa|up_4|NZ_CP009100.1_3115416_3115728_+,NA|203aa|up_3|NZ_CP009100.1_3116147_3116756_+,NA	NA|85aa|up_9|NZ_CP009100.1_3112473_3112728_-	NA	NA|135aa|up_8|NZ_CP009100.1_3112875_3113280_+	NA	NA|64aa|up_7|NZ_CP009100.1_3113276_3113468_+	NA	NA|385aa|up_6|NZ_CP009100.1_3113666_3114821_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP009100.1_3115054_3115312_+	NA	NA|104aa|up_4|NZ_CP009100.1_3115416_3115728_+	NA	NA|203aa|up_3|NZ_CP009100.1_3116147_3116756_+	NA	NA|470aa|up_2|NZ_CP009100.1_3116826_3118236_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP009100.1_3118232_3119045_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP009100.1_3120574_3121836_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP009100.1_3123632_3123974_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP009100.1_3123974_3124991_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP009100.1_3125003_3126152_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP009100.1_3126247_3127375_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP009100.1_3127371_3128280_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP009100.1_3128260_3128971_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP009100.1_3128980_3129355_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP009100.1_3129351_3131790_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP009100.1_3131786_3132509_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP009100.1_3132908_3133454_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	14	3740674-3741215	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_3|NZ_CP009100.1_3755315_3755603_-,NA|87aa|down_7|NZ_CP009100.1_3768722_3768983_-	NA|282aa|up_9|NZ_CP009100.1_3719934_3720780_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP009100.1_3721254_3721695_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP009100.1_3721728_3722598_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP009100.1_3722618_3723629_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP009100.1_3723913_3724546_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP009100.1_3724612_3725842_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP009100.1_3726124_3727474_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP009100.1_3727485_3728625_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP009100.1_3728621_3729353_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP009100.1_3729361_3736933_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP009100.1_3743186_3743444_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|149aa|down_1|NZ_CP009100.1_3753797_3754244_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_2|NZ_CP009100.1_3754280_3755021_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_3|NZ_CP009100.1_3755315_3755603_-	NA	NA|265aa|down_4|NZ_CP009100.1_3767332_3768127_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_5|NZ_CP009100.1_3768208_3768580_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_6|NZ_CP009100.1_3768477_3768696_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_7|NZ_CP009100.1_3768722_3768983_-	NA	NA|130aa|down_8|NZ_CP009100.1_3769097_3769487_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_9|NZ_CP009100.1_3769500_3769794_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	15	3762470-3762596	5	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTTGCCGATGCCGGTGTTGAAA	22	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|96aa|up_0|NZ_CP009100.1_3755315_3755603_-,NA|87aa|down_3|NZ_CP009100.1_3768722_3768983_-	NA|211aa|up_9|NZ_CP009100.1_3723913_3724546_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_8|NZ_CP009100.1_3724612_3725842_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_7|NZ_CP009100.1_3726124_3727474_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_6|NZ_CP009100.1_3727485_3728625_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_5|NZ_CP009100.1_3728621_3729353_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_4|NZ_CP009100.1_3729361_3736933_-	pfam00823, PPE, PPE family	NA|86aa|up_3|NZ_CP009100.1_3743186_3743444_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|149aa|up_2|NZ_CP009100.1_3753797_3754244_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|up_1|NZ_CP009100.1_3754280_3755021_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|up_0|NZ_CP009100.1_3755315_3755603_-	NA	NA|265aa|down_0|NZ_CP009100.1_3767332_3768127_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_1|NZ_CP009100.1_3768208_3768580_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_2|NZ_CP009100.1_3768477_3768696_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_3|NZ_CP009100.1_3768722_3768983_-	NA	NA|130aa|down_4|NZ_CP009100.1_3769097_3769487_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_5|NZ_CP009100.1_3769500_3769794_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_6|NZ_CP009100.1_3769790_3770636_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_7|NZ_CP009100.1_3770759_3771035_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_8|NZ_CP009100.1_3771031_3771289_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_9|NZ_CP009100.1_3771330_3772521_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain
GCF_000738445.1_ASM73844v1	NZ_CP009100	Mycobacterium tuberculosis strain ZMC13-264 chromosome, complete genome	16	4110660-4110748	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NZ_CP009100.1_4101246_4102017_-,NA|233aa|up_0|NZ_CP009100.1_4109764_4110463_-,NA|126aa|down_6|NZ_CP009100.1_4115983_4116361_+	NA|388aa|up_9|NZ_CP009100.1_4096917_4098081_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NZ_CP009100.1_4098077_4099130_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NZ_CP009100.1_4099628_4100492_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_CP009100.1_4101246_4102017_-	NA	NA|549aa|up_5|NZ_CP009100.1_4102013_4103660_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_CP009100.1_4103656_4104520_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_CP009100.1_4104512_4105439_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_CP009100.1_4105440_4107066_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_CP009100.1_4107773_4109729_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP009100.1_4109764_4110463_-	NA	NA|173aa|down_0|NZ_CP009100.1_4110808_4111327_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP009100.1_4111327_4112311_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP009100.1_4112303_4113497_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP009100.1_4113502_4114324_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP009100.1_4114455_4115139_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP009100.1_4115138_4115876_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP009100.1_4115983_4116361_+	NA	NA|225aa|down_7|NZ_CP009100.1_4116459_4117134_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP009100.1_4117239_4118034_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP009100.1_4118040_4118496_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
