assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000734975.2_ASM73497v2	NZ_CP011052	Halomonas sp. KO116 chromosome, complete genome	1	4459385-4465765	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	PD-DExK,cas3,RT,DEDDh,csa3,WYL,DinG,PrimPol,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTCATCCCCGCTCGTGCGGGGATCGG,CGGTTCATCCCCGCTCGTGCGGGGATCGG,CGGTTCATCCCCGCTCGTGCGGGGATCGG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	104,104,36	104	TypeI-E	PD-DExK,cas3,RT,DEDDh,csa3,WYL,DinG,PrimPol,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csf2gr7,cas6f	NA|56aa|up_8|NZ_CP011052.1_4450419_4450587_+,NA|208aa|up_3|NZ_CP011052.1_4455954_4456578_+,NA|101aa|up_0|NZ_CP011052.1_4458848_4459151_+,NA|224aa|down_8|NZ_CP011052.1_4475449_4476121_+	NA|177aa|up_9|NZ_CP011052.1_4449802_4450333_+	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|56aa|up_8|NZ_CP011052.1_4450419_4450587_+	NA	NA|476aa|up_7|NZ_CP011052.1_4450601_4452029_-	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I)	NA|354aa|up_6|NZ_CP011052.1_4452021_4453083_-	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	NA|183aa|up_5|NZ_CP011052.1_4453304_4453853_-	pfam13511, DUF4124, Domain of unknown function (DUF4124)	NA|469aa|up_4|NZ_CP011052.1_4454014_4455421_-	PRK09469, glnA, glutamate--ammonia ligase	NA|208aa|up_3|NZ_CP011052.1_4455954_4456578_+	NA	NA|343aa|up_2|NZ_CP011052.1_4456614_4457643_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|332aa|up_1|NZ_CP011052.1_4457807_4458803_+	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]	NA|101aa|up_0|NZ_CP011052.1_4458848_4459151_+	NA	cas2|98aa|down_0|NZ_CP011052.1_4465875_4466169_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP011052.1_4466169_4467090_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|230aa|down_2|NZ_CP011052.1_4467099_4467789_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|251aa|down_3|NZ_CP011052.1_4467788_4468541_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP011052.1_4468550_4469642_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|222aa|down_5|NZ_CP011052.1_4469701_4470367_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|567aa|down_6|NZ_CP011052.1_4470366_4472067_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|892aa|down_7|NZ_CP011052.1_4472613_4475289_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|224aa|down_8|NZ_CP011052.1_4475449_4476121_+	NA	NA|245aa|down_9|NZ_CP011052.1_4476423_4477158_+	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters
GCF_000734975.2_ASM73497v2	NZ_CP011053	Halomonas sp. KO116 plasmid unnamed1, complete sequence	1	126469-126575	1	CRISPRCasFinder	no		RT,WYL	Orphan	TTCAGCCATGGCCTGGCACGTTTCGA	26	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,RT,DEDDh,csa3,WYL,DinG,PrimPol,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csf2gr7,cas6f	NA|139aa|up_7|NZ_CP011053.1_116586_117003_+,NA	NA|630aa|up_9|NZ_CP011053.1_113783_115673_+	TIGR01480, unnamed_protein_product, copper-resistance protein, CopA family	NA|257aa|up_8|NZ_CP011053.1_115682_116453_+	pfam05275, CopB, Copper resistance protein B precursor (CopB)	NA|139aa|up_7|NZ_CP011053.1_116586_117003_+	NA	NA|253aa|up_6|NZ_CP011053.1_117200_117959_+	COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]	NA|446aa|up_5|NZ_CP011053.1_118122_119460_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|116aa|up_4|NZ_CP011053.1_121319_121667_+	pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone oxidoreductase, chain 3	NA|439aa|up_3|NZ_CP011053.1_121657_122974_+	COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy production and conversion]	NA|309aa|up_2|NZ_CP011053.1_122960_123887_+	pfam00146, NADHdh, NADH dehydrogenase	NA|209aa|up_1|NZ_CP011053.1_123883_124510_+	pfam00499, Oxidored_q3, NADH-ubiquinone/plastoquinone oxidoreductase chain 6	NA|102aa|up_0|NZ_CP011053.1_124540_124846_+	CHL00015, ndhE, NADH dehydrogenase subunit 4L	NA|495aa|down_0|NZ_CP011053.1_126818_128303_+	COG1008, NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]	NA|470aa|down_1|NZ_CP011053.1_128302_129712_+	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|436aa|down_2|NZ_CP011053.1_129764_131072_+	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB	NA|321aa|down_3|NZ_CP011053.1_131074_132037_+	TIGR03438, conserved_hypothetical_protein, dimethylhistidine N-methyltransferase	NA|82aa|down_4|NZ_CP011053.1_133055_133301_-	pfam04982, HPP, HPP family	NA|989aa|down_5|NZ_CP011053.1_134381_137348_+	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|176aa|down_6|NZ_CP011053.1_137347_137875_+	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|289aa|down_7|NZ_CP011053.1_137907_138774_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|180aa|down_8|NZ_CP011053.1_139293_139833_-	pfam04982, HPP, HPP family	NA|943aa|down_9|NZ_CP011053.1_139832_142661_-	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite
GCF_000734975.2_ASM73497v2	NZ_CP011053	Halomonas sp. KO116 plasmid unnamed1, complete sequence	2	226331-226409	2	CRISPRCasFinder	no		RT,WYL	Orphan	CTATCTGTGCAACATTCCCCCTA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,RT,DEDDh,csa3,WYL,DinG,PrimPol,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csf2gr7,cas6f	NA,NA|344aa|down_0|NZ_CP011053.1_226603_227635_-,NA|105aa|down_2|NZ_CP011053.1_228429_228744_+,NA|112aa|down_3|NZ_CP011053.1_228787_229123_+,NA|422aa|down_6|NZ_CP011053.1_231396_232662_-,NA|277aa|down_7|NZ_CP011053.1_232658_233489_-	NA|434aa|up_9|NZ_CP011053.1_215733_217035_-	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|222aa|up_8|NZ_CP011053.1_217170_217836_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|178aa|up_7|NZ_CP011053.1_217850_218384_-	cd04211, Cupredoxin_like_2, Uncharacterized Cupredoxin-like subfamily	NA|302aa|up_6|NZ_CP011053.1_218667_219573_-	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism]	NA|124aa|up_5|NZ_CP011053.1_219576_219948_-	pfam04234, CopC, CopC domain	NA|181aa|up_4|NZ_CP011053.1_220306_220849_+	cd09916, CpxP_like, CpxP component of the bacterial Cpx-two-component system and related proteins	NA|138aa|up_3|NZ_CP011053.1_221033_221447_+	COG3019, COG3019, Predicted metal-binding protein [General function prediction only]	NA|343aa|up_2|NZ_CP011053.1_222494_223523_-	pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term	NA|301aa|up_1|NZ_CP011053.1_223819_224722_-	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|185aa|up_0|NZ_CP011053.1_224859_225414_+	PRK00024, PRK00024, DNA repair protein RadC	NA|344aa|down_0|NZ_CP011053.1_226603_227635_-	NA	NA|119aa|down_1|NZ_CP011053.1_227668_228025_-	cd16170, MvaT_DBD, DNA-binding domain of the bacterial xenogeneic silencer MvaT	NA|105aa|down_2|NZ_CP011053.1_228429_228744_+	NA	NA|112aa|down_3|NZ_CP011053.1_228787_229123_+	NA	NA|319aa|down_4|NZ_CP011053.1_229107_230064_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|254aa|down_5|NZ_CP011053.1_230638_231400_-	pfam01026, TatD_DNase, TatD related DNase	NA|422aa|down_6|NZ_CP011053.1_231396_232662_-	NA	NA|277aa|down_7|NZ_CP011053.1_232658_233489_-	NA	NA|624aa|down_8|NZ_CP011053.1_233488_235360_-	COG4928, COG4928, Predicted P-loop ATPase [General function prediction only]	NA|94aa|down_9|NZ_CP011053.1_236070_236352_-	pfam00888, Cullin, Cullin family
GCF_000734975.2_ASM73497v2	NZ_CP011054	Halomonas sp. KO116 plasmid unnamed2, complete sequence	1	156990-157091	1	CRISPRCasFinder	no		csf2gr7,cas6f,DinG	Orphan	CGAACTTAGGAATCGAACGAGTAG	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,RT,DEDDh,csa3,WYL,DinG,PrimPol,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csf2gr7,cas6f	NA|67aa|up_9|NZ_CP011054.1_149420_149621_-,NA|202aa|up_6|NZ_CP011054.1_152086_152692_+,NA|90aa|up_5|NZ_CP011054.1_152693_152963_+,NA|59aa|up_3|NZ_CP011054.1_153790_153967_+,NA|196aa|up_2|NZ_CP011054.1_154221_154809_+,NA|137aa|down_0|NZ_CP011054.1_157261_157672_+,NA|158aa|down_2|NZ_CP011054.1_159516_159990_+,NA|159aa|down_4|NZ_CP011054.1_160924_161401_+,NA|108aa|down_5|NZ_CP011054.1_161414_161738_+,NA|68aa|down_6|NZ_CP011054.1_161977_162181_+,NA|226aa|down_7|NZ_CP011054.1_162197_162875_+,NA|128aa|down_8|NZ_CP011054.1_162871_163255_+,NA|446aa|down_9|NZ_CP011054.1_163313_164651_+	NA|67aa|up_9|NZ_CP011054.1_149420_149621_-	NA	NA|272aa|up_8|NZ_CP011054.1_149651_150467_-	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily	NA|449aa|up_7|NZ_CP011054.1_150731_152078_+	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|202aa|up_6|NZ_CP011054.1_152086_152692_+	NA	NA|90aa|up_5|NZ_CP011054.1_152693_152963_+	NA	NA|235aa|up_4|NZ_CP011054.1_153073_153778_+	pfam13462, Thioredoxin_4, Thioredoxin	NA|59aa|up_3|NZ_CP011054.1_153790_153967_+	NA	NA|196aa|up_2|NZ_CP011054.1_154221_154809_+	NA	NA|147aa|up_1|NZ_CP011054.1_154890_155331_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|425aa|up_0|NZ_CP011054.1_155335_156610_+	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|137aa|down_0|NZ_CP011054.1_157261_157672_+	NA	NA|312aa|down_1|NZ_CP011054.1_158006_158942_-	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein	NA|158aa|down_2|NZ_CP011054.1_159516_159990_+	NA	NA|257aa|down_3|NZ_CP011054.1_160049_160820_+	pfam10881, DUF2726, Protein of unknown function (DUF2726)	NA|159aa|down_4|NZ_CP011054.1_160924_161401_+	NA	NA|108aa|down_5|NZ_CP011054.1_161414_161738_+	NA	NA|68aa|down_6|NZ_CP011054.1_161977_162181_+	NA	NA|226aa|down_7|NZ_CP011054.1_162197_162875_+	NA	NA|128aa|down_8|NZ_CP011054.1_162871_163255_+	NA	NA|446aa|down_9|NZ_CP011054.1_163313_164651_+	NA
