assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000730215.1_ASM73021v2	NZ_CP007631	Streptococcus agalactiae strain NGBS061, complete genome	1	972927-975008	1,1,1,2,3,4,5,6	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR,PILER-CR,PILER-CR	no	cas9,cas1,cas2,csn2	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Type II-C,Type II-B,Type II-A	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,TAAGGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC,AATGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACCA,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACT,TAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACT,GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	36,36,36,40,41,37,39,36	5	5	973029-973058|973161-973190|973227-973256|973623-973652|973623-973648	NZ_CP007631.1_1157762-1157733|NZ_CP007631.1_1083875-1083904|NZ_CP007631.1_1157762-1157733|NZ_CP007631.1_1204477-1204506|NZ_CP007631.1_1204477-1204502	II-A:II-A:II-A:II-A:II-A:II-A:II-A:II-A	21,30,31,21,21,21,21,21	31	TypeII-C,TypeII-B,TypeII-A	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA,NA|57aa|down_0|NZ_CP007631.1_975262_975433_+	NA|124aa|up_9|NZ_CP007631.1_962308_962680_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|127aa|up_8|NZ_CP007631.1_962704_963085_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|377aa|up_7|NZ_CP007631.1_963176_964307_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|246aa|up_6|NZ_CP007631.1_964310_965048_+	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|257aa|up_5|NZ_CP007631.1_965048_965819_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|219aa|up_4|NZ_CP007631.1_965808_966465_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1371aa|up_3|NZ_CP007631.1_966852_970965_+	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	cas1|290aa|up_2|NZ_CP007631.1_970966_971836_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|114aa|up_1|NZ_CP007631.1_971832_972174_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_CP007631.1_972160_972826_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|57aa|down_0|NZ_CP007631.1_975262_975433_+	NA	NA|139aa|down_1|NZ_CP007631.1_975565_975982_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|611aa|down_2|NZ_CP007631.1_976117_977950_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|878aa|down_3|NZ_CP007631.1_978196_980830_+	NF033189, internalin_A, class 1 internalin InlA	NA|220aa|down_4|NZ_CP007631.1_980929_981589_+	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|155aa|down_5|NZ_CP007631.1_981597_982062_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|145aa|down_6|NZ_CP007631.1_982061_982496_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|931aa|down_7|NZ_CP007631.1_982647_985440_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|368aa|down_8|NZ_CP007631.1_985439_986543_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|213aa|down_9|NZ_CP007631.1_986663_987302_-	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others
GCF_000730215.1_ASM73021v2	NZ_CP007631	Streptococcus agalactiae strain NGBS061, complete genome	2	1560034-1561143	2	CRT	no		cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Orphan	GCTNGTNCTNGCTGACGT	18	3	8	1560496-1560513|1560496-1560513|1560496-1560513|1560532-1560549|1560532-1560549|1560532-1560549|1560616-1560633|1560616-1560633	NZ_CP007631.1_1559776-1559793|NZ_CP007631.1_1559884-1559901|NZ_CP007631.1_1559992-1560009|NZ_CP007631.1_1559776-1559793|NZ_CP007631.1_1559992-1560009|NZ_CP007631.1_1559884-1559901|NZ_CP007631.1_1559776-1559793|NZ_CP007631.1_1559884-1559901	NA	20	20	Orphan	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA,NA|117aa|down_5|NZ_CP007631.1_1571281_1571632_+,NA|56aa|down_6|NZ_CP007631.1_1571716_1571884_-	NA|331aa|up_9|NZ_CP007631.1_1546859_1547852_-	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|513aa|up_8|NZ_CP007631.1_1547848_1549387_-	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|515aa|up_7|NZ_CP007631.1_1549414_1550959_-	pfam16993, Asp1, Accessory Sec system protein Asp1	NA|410aa|up_6|NZ_CP007631.1_1550958_1552188_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|399aa|up_5|NZ_CP007631.1_1552311_1553508_-	TIGR03728, glyco_access_1, glycosyltransferase, SP_1767 family	NA|296aa|up_4|NZ_CP007631.1_1553568_1554456_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|395aa|up_3|NZ_CP007631.1_1554436_1555621_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|414aa|up_2|NZ_CP007631.1_1555610_1556852_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|402aa|up_1|NZ_CP007631.1_1556848_1558054_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|336aa|up_0|NZ_CP007631.1_1558062_1559070_-	PRK09814, PRK09814, sugar transferase	NA|498aa|down_0|NZ_CP007631.1_1563463_1564957_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|664aa|down_1|NZ_CP007631.1_1565054_1567046_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|307aa|down_2|NZ_CP007631.1_1567106_1568027_-	pfam02517, Abi, CAAX protease self-immunity	NA|728aa|down_3|NZ_CP007631.1_1568209_1570393_+	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|247aa|down_4|NZ_CP007631.1_1570392_1571133_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|117aa|down_5|NZ_CP007631.1_1571281_1571632_+	NA	NA|56aa|down_6|NZ_CP007631.1_1571716_1571884_-	NA	NA|438aa|down_7|NZ_CP007631.1_1571909_1573223_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|down_8|NZ_CP007631.1_1573283_1573412_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|414aa|down_9|NZ_CP007631.1_1573589_1574831_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_000730215.1_ASM73021v2	NZ_CP007631	Streptococcus agalactiae strain NGBS061, complete genome	3	2039140-2039215	2	CRISPRCasFinder	no		cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Orphan	AGCAACTGATACTTGTTTAACATCA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA|72aa|up_9|NZ_CP007631.1_2030328_2030544_-,NA|91aa|up_7|NZ_CP007631.1_2031076_2031349_-,NA|126aa|up_5|NZ_CP007631.1_2031672_2032050_-,NA|154aa|up_2|NZ_CP007631.1_2035322_2035784_-,NA|99aa|up_1|NZ_CP007631.1_2035805_2036102_-,NA|88aa|down_0|NZ_CP007631.1_2041314_2041578_-,NA|104aa|down_2|NZ_CP007631.1_2042043_2042355_-,NA|63aa|down_6|NZ_CP007631.1_2044548_2044737_+,NA|119aa|down_7|NZ_CP007631.1_2044774_2045131_-,NA|113aa|down_8|NZ_CP007631.1_2045134_2045473_-	NA|72aa|up_9|NZ_CP007631.1_2030328_2030544_-	NA	NA|161aa|up_8|NZ_CP007631.1_2030547_2031030_-	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|91aa|up_7|NZ_CP007631.1_2031076_2031349_-	NA	NA|72aa|up_6|NZ_CP007631.1_2031473_2031689_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|126aa|up_5|NZ_CP007631.1_2031672_2032050_-	NA	NA|430aa|up_4|NZ_CP007631.1_2032065_2033355_-	pfam02486, Rep_trans, Replication initiation factor	NA|554aa|up_3|NZ_CP007631.1_2033584_2035246_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|154aa|up_2|NZ_CP007631.1_2035322_2035784_-	NA	NA|99aa|up_1|NZ_CP007631.1_2035805_2036102_-	NA	NA|937aa|up_0|NZ_CP007631.1_2036161_2038972_-	pfam18220, BspA_v, Adhesin BspA variable domain	NA|88aa|down_0|NZ_CP007631.1_2041314_2041578_-	NA	NA|154aa|down_1|NZ_CP007631.1_2041597_2042059_-	cd02951, SoxW, SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation	NA|104aa|down_2|NZ_CP007631.1_2042043_2042355_-	NA	NA|144aa|down_3|NZ_CP007631.1_2042347_2042779_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|down_4|NZ_CP007631.1_2043708_2044050_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|135aa|down_5|NZ_CP007631.1_2044050_2044455_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|63aa|down_6|NZ_CP007631.1_2044548_2044737_+	NA	NA|119aa|down_7|NZ_CP007631.1_2044774_2045131_-	NA	NA|113aa|down_8|NZ_CP007631.1_2045134_2045473_-	NA	NA|98aa|down_9|NZ_CP007631.1_2045469_2045763_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family
GCF_000730215.1_ASM73021v2	NZ_CP007631	Streptococcus agalactiae strain NGBS061, complete genome	4	2089039-2089500	3	CRT	no		cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	Orphan	TCTGGNTTNNCNTCTGGT	18	3	3	2089249-2089266|2089333-2089350|2089369-2089386	NZ_CP007631.1_2089021-2089038|NZ_CP007631.1_2089021-2089038|NZ_CP007631.1_2089780-2089797	NA	10	10	Orphan	cas3,DinG,cas9,cas1,cas2,csn2,csm6,DEDDh,csa3	NA|42aa|up_8|NZ_CP007631.1_2075037_2075163_+,NA|203aa|up_4|NZ_CP007631.1_2082237_2082846_+,NA	NA|231aa|up_9|NZ_CP007631.1_2074110_2074803_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|42aa|up_8|NZ_CP007631.1_2075037_2075163_+	NA	NA|1572aa|up_7|NZ_CP007631.1_2075125_2079841_+	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|229aa|up_6|NZ_CP007631.1_2080073_2080760_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|463aa|up_5|NZ_CP007631.1_2080756_2082145_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|203aa|up_4|NZ_CP007631.1_2082237_2082846_+	NA	NA|834aa|up_3|NZ_CP007631.1_2082935_2085437_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|416aa|up_2|NZ_CP007631.1_2085813_2087061_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|282aa|up_1|NZ_CP007631.1_2087103_2087949_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|180aa|up_0|NZ_CP007631.1_2088086_2088626_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|58aa|down_0|NZ_CP007631.1_2091604_2091778_-	COG0690, SecE, Preprotein translocase subunit SecE [Intracellular trafficking and secretion]	NA|51aa|down_1|NZ_CP007631.1_2091813_2091966_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|774aa|down_2|NZ_CP007631.1_2092014_2094336_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|295aa|down_3|NZ_CP007631.1_2094379_2095264_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|547aa|down_4|NZ_CP007631.1_2095288_2096929_-	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|404aa|down_5|NZ_CP007631.1_2097098_2098310_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|224aa|down_6|NZ_CP007631.1_2098376_2099048_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|401aa|down_7|NZ_CP007631.1_2099077_2100280_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|down_8|NZ_CP007631.1_2100300_2101080_-	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases	NA|246aa|down_9|NZ_CP007631.1_2101238_2101976_+	COG2188, PhnF, Transcriptional regulators [Transcription]
