assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000714595.1_ASM71459v1	NZ_CP007799	Escherichia coli Nissle 1917 chromosome, complete genome	1	2606114-2606227	1	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas3,csa3,c2c9_V-U4,WYL	Orphan	TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas3,csa3,c2c9_V-U4,WYL	NA,NA	NA|395aa|up_9|NZ_CP007799.1_2585016_2586201_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP007799.1_2586274_2587051_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP007799.1_2587055_2588705_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP007799.1_2588705_2593100_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP007799.1_2593243_2593867_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP007799.1_2593863_2595552_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP007799.1_2595700_2598328_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP007799.1_2598474_2599197_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1253aa|up_1|NZ_CP007799.1_2599336_2603095_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP007799.1_2603776_2606062_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP007799.1_2606251_2607382_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP007799.1_2607381_2607636_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP007799.1_2607689_2608340_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP007799.1_2608542_2609619_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP007799.1_2609623_2610982_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP007799.1_2611254_2612883_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP007799.1_2612872_2614132_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP007799.1_2614128_2615319_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|309aa|down_8|NZ_CP007799.1_2615511_2616438_+	PRK09956, PRK09956, ISNCY family transposase	NA|268aa|down_9|NZ_CP007799.1_2616478_2617282_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
GCF_000714595.1_ASM71459v1	NZ_CP007799	Escherichia coli Nissle 1917 chromosome, complete genome	2	4968147-4968293	2	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas3,csa3,c2c9_V-U4,WYL	Orphan	GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	51	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas3,csa3,c2c9_V-U4,WYL	NA,NA	NA|468aa|up_9|NZ_CP007799.1_4955160_4956564_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|335aa|up_8|NZ_CP007799.1_4956620_4957625_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|311aa|up_7|NZ_CP007799.1_4957648_4958581_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_6|NZ_CP007799.1_4958591_4959812_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|151aa|up_5|NZ_CP007799.1_4960489_4960942_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_4|NZ_CP007799.1_4960986_4961991_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_3|NZ_CP007799.1_4962152_4962569_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_2|NZ_CP007799.1_4962746_4963250_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|952aa|up_1|NZ_CP007799.1_4964677_4967533_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP007799.1_4967532_4967976_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP007799.1_4968329_4969841_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP007799.1_4970107_4971208_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP007799.1_4971207_4972290_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP007799.1_4972545_4974048_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP007799.1_4974177_4975197_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|327aa|down_5|NZ_CP007799.1_4976053_4977034_-	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase	NA|369aa|down_6|NZ_CP007799.1_4977098_4978205_-	PRK14131, PRK14131, N-acetylneuraminate epimerase	NA|239aa|down_7|NZ_CP007799.1_4978224_4978941_-	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM)	NA|201aa|down_8|NZ_CP007799.1_4980407_4981010_+	PRK09870, PRK09870, tyrosine recombinase; Provisional	NA|199aa|down_9|NZ_CP007799.1_4981487_4982084_+	PRK09871, PRK09871, tyrosine recombinase; Provisional
GCF_000714595.1_ASM71459v1	NZ_CP007799	Escherichia coli Nissle 1917 chromosome, complete genome	3	5051059-5051193	3	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas3,csa3,c2c9_V-U4,WYL	Orphan	TGTCGCGTCTTATCATGCCTACAAGTCTGTGCCGAACCGTAGGCCG	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas3,csa3,c2c9_V-U4,WYL	NA,NA	NA|79aa|up_9|NZ_CP007799.1_5042526_5042763_+	pfam07256, DUF1435, Protein of unknown function (DUF1435)	NA|344aa|up_8|NZ_CP007799.1_5043414_5044446_-	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|138aa|up_7|NZ_CP007799.1_5044548_5044962_+	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated	NA|149aa|up_6|NZ_CP007799.1_5044930_5045377_+	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|226aa|up_5|NZ_CP007799.1_5045391_5046069_+	PRK09449, PRK09449, dUMP phosphatase; Provisional	NA|530aa|up_4|NZ_CP007799.1_5046159_5047749_+	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|202aa|up_3|NZ_CP007799.1_5048141_5048747_+	PRK10568, PRK10568, molecular chaperone OsmY	NA|54aa|up_2|NZ_CP007799.1_5048873_5049035_+	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|358aa|up_1|NZ_CP007799.1_5049156_5050230_+	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|261aa|up_0|NZ_CP007799.1_5050226_5051009_+	PRK11449, PRK11449, metal-dependent hydrolase	NA|288aa|down_0|NZ_CP007799.1_5051204_5052068_-	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family	NA|517aa|down_1|NZ_CP007799.1_5052039_5053590_-	PRK10977, PRK10977, hypothetical protein; Provisional	NA|260aa|down_2|NZ_CP007799.1_5053847_5054627_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|441aa|down_3|NZ_CP007799.1_5054753_5056076_+	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|408aa|down_4|NZ_CP007799.1_5056127_5057351_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|240aa|down_5|NZ_CP007799.1_5057407_5058127_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|88aa|down_6|NZ_CP007799.1_5058287_5058551_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|339aa|down_7|NZ_CP007799.1_5058582_5059599_-	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|215aa|down_8|NZ_CP007799.1_5059626_5060271_-	PRK11246, PRK11246, YtjB family periplasmic protein	NA|323aa|down_9|NZ_CP007799.1_5060376_5061345_+	PRK11133, serB, phosphoserine phosphatase; Provisional
GCF_000714595.1_ASM71459v1	NZ_CP007799	Escherichia coli Nissle 1917 chromosome, complete genome	4	5298264-5298355	4	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas3,csa3,c2c9_V-U4,WYL	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	1	1	5298290-5298329	NZ_CP007799.1_1074543-1074504	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas3,csa3,c2c9_V-U4,WYL	NA|203aa|up_4|NZ_CP007799.1_5291529_5292138_+,NA|86aa|up_3|NZ_CP007799.1_5294670_5294928_-,NA	NA|152aa|up_9|NZ_CP007799.1_5284508_5284964_+	pfam18673, IrmA, interleukin receptor mimic protein A	NA|70aa|up_8|NZ_CP007799.1_5285064_5285274_+	pfam06006, DUF905, Bacterial protein of unknown function (DUF905)	NA|224aa|up_7|NZ_CP007799.1_5286248_5286920_+	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|399aa|up_6|NZ_CP007799.1_5286929_5288126_+	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|69aa|up_5|NZ_CP007799.1_5291235_5291442_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|203aa|up_4|NZ_CP007799.1_5291529_5292138_+	NA	NA|86aa|up_3|NZ_CP007799.1_5294670_5294928_-	NA	NA|189aa|up_2|NZ_CP007799.1_5295729_5296296_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP007799.1_5296306_5296801_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP007799.1_5296821_5298150_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|134aa|down_0|NZ_CP007799.1_5299224_5299626_-	PRK02967, PRK02967, nickel-responsive transcriptional regulator NikR	NA|265aa|down_1|NZ_CP007799.1_5299631_5300426_-	PRK10419, nikE, nickel ABC transporter ATP-binding protein NikE	NA|255aa|down_2|NZ_CP007799.1_5300422_5301187_-	PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional	NA|278aa|down_3|NZ_CP007799.1_5301186_5302020_-	PRK10417, nikC, nickel transporter permease NikC; Provisional	NA|74aa|down_4|NZ_CP007799.1_5303149_5303371_-	pfam06174, DUF987, Protein of unknown function (DUF987)	NA|159aa|down_5|NZ_CP007799.1_5303439_5303916_-	COG2003, RadC, DNA repair proteins [DNA replication, recombination, and repair]	NA|158aa|down_6|NZ_CP007799.1_5303931_5304405_-	pfam03230, Antirestrict, Antirestriction protein	NA|274aa|down_7|NZ_CP007799.1_5304667_5305489_-	pfam06067, DUF932, Domain of unknown function (DUF932)	NA|217aa|down_8|NZ_CP007799.1_5308449_5309100_+	PRK15401, PRK15401, DNA oxidative demethylase AlkB	NA|427aa|down_9|NZ_CP007799.1_5310058_5311339_+	COG3177, COG3177, Fic family protein [Function unknown]
