assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000709535.1_ASM70953v1	NZ_CP006692	Salmonella bongori serovar 48:z41:-- str. RKS3044 chromosome, complete genome	1	2662169-2663175	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTAGCGCGGGGAACAC,CGGTTTATCCCCGCTAGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	16,16,15	16	TypeI-E	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP006692.1_2653900_2654662_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP006692.1_2654642_2655692_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP006692.1_2655688_2656168_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP006692.1_2656167_2656878_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP006692.1_2656896_2657208_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP006692.1_2657398_2657722_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP006692.1_2657772_2658378_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP006692.1_2658364_2659804_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP006692.1_2659813_2660722_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|351aa|up_0|NZ_CP006692.1_2660974_2662027_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP006692.1_2663271_2663565_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP006692.1_2663564_2664485_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP006692.1_2664481_2665132_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|249aa|down_3|NZ_CP006692.1_2665113_2665860_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP006692.1_2665870_2666926_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|185aa|down_5|NZ_CP006692.1_2666939_2667494_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP006692.1_2667490_2669047_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP006692.1_2669058_2671722_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP006692.1_2672158_2673112_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP006692.1_2673202_2673937_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000709535.1_ASM70953v1	NZ_CP006692	Salmonella bongori serovar 48:z41:-- str. RKS3044 chromosome, complete genome	2	2679171-2680054	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	TypeI-E	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	cas7|352aa|up_9|NZ_CP006692.1_2665870_2666926_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|185aa|up_8|NZ_CP006692.1_2666939_2667494_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP006692.1_2667490_2669047_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP006692.1_2669058_2671722_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP006692.1_2672158_2673112_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP006692.1_2673202_2673937_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP006692.1_2674020_2675733_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP006692.1_2675732_2677532_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP006692.1_2677838_2678201_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP006692.1_2678281_2679079_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP006692.1_2680344_2681016_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP006692.1_2681519_2682818_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP006692.1_2682900_2684538_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_3|NZ_CP006692.1_2684765_2685557_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|745aa|down_4|NZ_CP006692.1_2685674_2687909_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|432aa|down_5|NZ_CP006692.1_2687960_2689256_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_6|NZ_CP006692.1_2689313_2692070_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|381aa|down_7|NZ_CP006692.1_2692113_2693256_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|447aa|down_8|NZ_CP006692.1_2693334_2694675_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|down_9|NZ_CP006692.1_2694695_2696036_-	TIGR03247, glucar-dehydr, glucarate dehydratase
GCF_000709535.1_ASM70953v1	NZ_CP006692	Salmonella bongori serovar 48:z41:-- str. RKS3044 chromosome, complete genome	3	4287060-4287142	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TGGCATCACCCTTTAGCCTATTG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|92aa|up_4|NZ_CP006692.1_4281745_4282021_+,NA|87aa|down_1|NZ_CP006692.1_4288176_4288437_-,NA|240aa|down_2|NZ_CP006692.1_4288426_4289146_-,NA|378aa|down_3|NZ_CP006692.1_4289237_4290371_-,NA|125aa|down_7|NZ_CP006692.1_4293741_4294116_-	NA|178aa|up_9|NZ_CP006692.1_4278735_4279269_-	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins	NA|217aa|up_8|NZ_CP006692.1_4279244_4279895_-	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family	NA|203aa|up_7|NZ_CP006692.1_4279901_4280510_-	TIGR03513, GldL_gliding, gliding motility-associated protein GldL	NA|155aa|up_6|NZ_CP006692.1_4280502_4280967_-	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|139aa|up_5|NZ_CP006692.1_4281087_4281504_-	pfam12101, DUF3577, Protein of unknown function (DUF3577)	NA|92aa|up_4|NZ_CP006692.1_4281745_4282021_+	NA	NA|165aa|up_3|NZ_CP006692.1_4282069_4282564_-	pfam11358, DUF3158, Protein of unknown function (DUF3158)	NA|233aa|up_2|NZ_CP006692.1_4282553_4283252_-	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family	NA|189aa|up_1|NZ_CP006692.1_4283833_4284400_-	COG3545, COG3545, Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]	NA|771aa|up_0|NZ_CP006692.1_4284624_4286937_-	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|99aa|down_0|NZ_CP006692.1_4287509_4287806_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|87aa|down_1|NZ_CP006692.1_4288176_4288437_-	NA	NA|240aa|down_2|NZ_CP006692.1_4288426_4289146_-	NA	NA|378aa|down_3|NZ_CP006692.1_4289237_4290371_-	NA	NA|180aa|down_4|NZ_CP006692.1_4290389_4290929_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|495aa|down_5|NZ_CP006692.1_4290912_4292397_-	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|452aa|down_6|NZ_CP006692.1_4292393_4293749_-	TIGR00665, DnaB, replicative DNA helicase	NA|125aa|down_7|NZ_CP006692.1_4293741_4294116_-	NA	NA|295aa|down_8|NZ_CP006692.1_4294112_4294997_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|249aa|down_9|NZ_CP006692.1_4295387_4296134_-	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)
