The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP008724	Staphylococcus xylosus strain SMQ-121 chromosome, complete genome	2757557	1109430	1147720	2757557	tRNA,protease	Staphylococcus_phage(96.3%)	39	NA	NA
WP_052344168.1|1109430_1110723_-|protease	trypsin-like serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	26.7	2.6e-06
WP_042362459.1|1110776_1111043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042362460.1|1111048_1112050_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_042362461.1|1112776_1113340_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_042362462.1|1113606_1114986_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	60.5	1.4e-164
WP_042362463.1|1115005_1116010_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	48.8	3.8e-90
WP_042362464.1|1116006_1116243_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	84.7	3.5e-31
WP_042362465.1|1116309_1116786_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	53.2	2.6e-41
WP_042363539.1|1116793_1117543_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.0	2.1e-101
WP_029376981.1|1117607_1119197_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.8	7.7e-263
WP_029376983.1|1119586_1120783_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	86.4	6.8e-195
WP_029376984.1|1120876_1121785_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	78.9	7.4e-93
WP_042362466.1|1121999_1122836_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	69.0	2.2e-112
WP_042362467.1|1122976_1123330_-	CrcB family protein	NA	NA	NA	NA	NA
WP_042362468.1|1123326_1123692_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	61.5	1.9e-36
WP_042362469.1|1123923_1124229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029376989.1|1124518_1125232_+	transaldolase	NA	E3SKN5	Synechococcus_phage	35.3	5.0e-20
WP_042362470.1|1125440_1126076_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_042362471.1|1126212_1126662_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	48.6	1.8e-20
WP_042362472.1|1126670_1127093_-	competence protein ComK	NA	NA	NA	NA	NA
WP_042362473.1|1127105_1127573_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	43.2	3.4e-25
WP_017722196.1|1127790_1128015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042362474.1|1128179_1129034_+	N-acetylglucosaminidase	NA	A0A1W6JQU5	Staphylococcus_phage	44.1	4.0e-40
WP_042362475.1|1129458_1130385_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_042362476.1|1130556_1132020_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	61.8	4.6e-12
WP_042362477.1|1132583_1133627_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	64.7	5.1e-130
WP_042362478.1|1133633_1134266_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	63.8	2.9e-72
WP_042362479.1|1134276_1135458_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	73.3	2.8e-169
WP_039067036.1|1135471_1135930_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	76.3	1.7e-58
WP_042362480.1|1136127_1137129_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	65.5	6.8e-124
WP_042362481.1|1137395_1138220_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_042362482.1|1138438_1139395_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_042362483.1|1139545_1139947_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_042362484.1|1140043_1140604_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	61.6	6.0e-61
WP_042362485.1|1140600_1141554_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	85.4	8.6e-68
WP_042362486.1|1141663_1142833_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	78.2	2.8e-169
WP_042362487.1|1143351_1145766_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.2	0.0e+00
WP_029377008.1|1145785_1146097_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	69.9	2.2e-36
WP_042362488.1|1146445_1147720_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	77.2	2.5e-38
>prophage 2
NZ_CP008724	Staphylococcus xylosus strain SMQ-121 chromosome, complete genome	2757557	1269231	1278430	2757557	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_029377110.1|1269231_1270236_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	30.8	3.4e-06
WP_042362562.1|1270238_1271264_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_042362563.1|1271284_1272424_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	3.8e-86
WP_017724668.1|1272441_1272702_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	9.7e-06
WP_042362564.1|1273109_1275386_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.2	2.0e-30
WP_042362565.1|1275619_1277899_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.3	1.6e-72
WP_029377115.1|1277911_1278430_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.9	3.9e-30
>prophage 3
NZ_CP008724	Staphylococcus xylosus strain SMQ-121 chromosome, complete genome	2757557	1407743	1420105	2757557		uncultured_Mediterranean_phage(25.0%)	14	NA	NA
WP_042362649.1|1407743_1408658_-	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	30.9	9.0e-06
WP_029377232.1|1408817_1409360_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_029377233.1|1409463_1409910_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_042362650.1|1409952_1410840_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	30.1	2.5e-37
WP_029377235.1|1410915_1411422_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_042362651.1|1411514_1412249_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	4.7e-05
WP_101104620.1|1412238_1412781_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	32.1	1.2e-10
WP_042362653.1|1412773_1413511_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_042362654.1|1413640_1414363_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	40.9	3.2e-46
WP_042363552.1|1414346_1416125_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	24.9	2.7e-22
WP_029377241.1|1416591_1417137_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_026113585.1|1417411_1417660_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	5.8e-16
WP_042362655.1|1417770_1418736_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_042362656.1|1418722_1420105_+	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	33.7	3.6e-59
>prophage 4
NZ_CP008724	Staphylococcus xylosus strain SMQ-121 chromosome, complete genome	2757557	1868548	1877024	2757557		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_029379090.1|1868548_1869115_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.8	1.4e-28
WP_042362945.1|1869117_1870146_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.6	4.3e-65
WP_029379092.1|1870138_1871626_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.2	2.9e-46
WP_042362946.1|1871604_1873794_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	37.7	2.7e-133
WP_029379094.1|1873786_1874458_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_017724119.1|1874457_1874718_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_042362947.1|1874720_1875422_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.6	5.8e-45
WP_042362948.1|1875421_1876555_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_029379097.1|1876541_1877024_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.0	3.7e-19
>prophage 5
NZ_CP008724	Staphylococcus xylosus strain SMQ-121 chromosome, complete genome	2757557	2115581	2131539	2757557		uncultured_Caudovirales_phage(41.67%)	13	NA	NA
WP_042363103.1|2115581_2116382_-	ATP-binding cassette domain-containing protein	NA	A0A285PWH2	Cedratvirus	28.2	1.7e-13
WP_042363104.1|2116378_2117338_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	54.0	8.0e-05
WP_029377693.1|2117327_2118296_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.2	9.8e-136
WP_042363105.1|2118676_2119645_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	92.2	2.6e-173
WP_042363106.1|2119761_2121867_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	89.4	0.0e+00
WP_042363107.1|2121829_2122228_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	73.5	8.9e-51
WP_042363108.1|2122949_2123831_+	DMT family transporter	NA	NA	NA	NA	NA
WP_029377697.1|2123852_2124353_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	4.5e-52
WP_042363109.1|2124536_2126051_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.6	1.9e-69
WP_042363110.1|2126708_2128217_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.4	4.1e-72
WP_042363564.1|2128556_2129519_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	24.5	1.5e-11
WP_017722532.1|2129686_2130235_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.8	1.0e-28
WP_042363111.1|2130483_2131539_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	24.2	8.2e-19
>prophage 6
NZ_CP008724	Staphylococcus xylosus strain SMQ-121 chromosome, complete genome	2757557	2144809	2152199	2757557		Pandoravirus(33.33%)	9	NA	NA
WP_042363120.1|2144809_2145952_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	38.6	1.3e-22
WP_042363121.1|2145935_2146529_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0B5J984	Pandoravirus	32.6	3.5e-27
WP_029377712.1|2146784_2147456_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	54.9	9.1e-64
WP_042363122.1|2147458_2147887_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_029377714.1|2147879_2148596_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	44.2	8.5e-52
WP_042363123.1|2148832_2149426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042363124.1|2149489_2149744_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_042363125.1|2149928_2150990_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	42.8	5.4e-63
WP_042363126.1|2151359_2152199_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.0	1.8e-56
