The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007803	Mycobacterium tuberculosis K chromosome, complete genome	4385518	2923801	2962073	4385518	terminase,integrase,capsid,tRNA,protease,head	Mycobacterium_phage(30.0%)	47	2952602:2952629	2962226:2962253
WP_003413486.1|2923801_2925880_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2925988_2926216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031655258.1|2926212_2927598_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2927942_2928443_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2928459_2928900_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2929046_2929724_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2929708_2930062_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2930074_2930500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901438.1|2930496_2931171_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2931248_2932070_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2932205_2933099_+	universal stress protein TB31.7	NA	NA	NA	NA	NA
WP_003413594.1|2933101_2933920_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2933934_2935116_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2935174_2935606_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2936119_2937361_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2937670_2938033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003902322.1|2938379_2939504_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2939505_2940045_+	archease	NA	NA	NA	NA	NA
WP_003413616.1|2940184_2941483_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2941521_2941803_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2941947_2942433_-	non-heme di-iron catalase	NA	NA	NA	NA	NA
WP_003908019.1|2942459_2942714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2942717_2945054_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2945082_2945325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2945325_2946003_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2946198_2946855_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2947017_2947464_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2947638_2947971_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2948090_2948450_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2948551_2949010_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2949145_2949526_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2949522_2951019_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_003912823.1|2951253_2951445_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
2952602:2952629	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2952735_2953167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2953163_2954162_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2954175_2954640_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003908028.1|2954627_2954879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003901443.1|2955049_2956489_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2956496_2957030_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2957182_2957809_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003899414.1|2957840_2958164_-	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899415.1|2958243_2958489_-	type II toxin-antitoxin system antitoxin	NA	NA	NA	NA	NA
WP_003899416.1|2958485_2959913_-	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899417.1|2959914_2960307_-	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_003899418.1|2960303_2960564_-	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	64.6	3.0e-15
WP_003900543.1|2960580_2960943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899420.1|2960945_2962073_-|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
2962226:2962253	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP007803	Mycobacterium tuberculosis K chromosome, complete genome	4385518	3690856	3774710	4385518	tRNA,transposase,protease	Pandoravirus(33.33%)	54	NA	NA
WP_009937401.1|3690856_3691018_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3691039_3692569_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3692501_3693440_-	sigma-70 family RNA polymerase sigma factor SigJ	NA	NA	NA	NA	NA
WP_003902446.1|3693448_3694816_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3694884_3696102_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3696197_3697706_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3697702_3698854_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3699044_3699890_-|protease	PDZ-interacting protease regulator Ppr1	protease	NA	NA	NA	NA
WP_003900026.1|3700364_3700805_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3700838_3701708_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3701728_3702739_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003417452.1|3703668_3704898_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3705180_3706530_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3706541_3707681_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3707677_3708409_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_078442682.1|3708417_3716031_-	PPE family protein	NA	NA	NA	NA	NA
WP_158423067.1|3716027_3716789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417619.1|3721252_3721510_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003901612.1|3721765_3731239_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3731864_3732311_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003911006.1|3732347_3733088_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3733382_3733670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417738.1|3745399_3746194_-	BBE domain-containing protein	NA	NA	NA	NA	NA
WP_003417739.1|3746275_3746647_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3746544_3746763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3746789_3747050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3747164_3747554_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3747567_3747861_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3747857_3748703_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3748826_3749102_+	type II toxin-antitoxin system antitoxin RelJ	NA	NA	NA	NA	NA
WP_003417760.1|3749098_3749356_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3749397_3750588_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3750704_3751073_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3751069_3751621_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3751627_3752209_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3752189_3752558_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3752535_3752928_-	roadblock/LC7 domain-containing protein	NA	NA	NA	NA	NA
WP_003901616.1|3752924_3755555_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003901617.1|3755790_3756255_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_009938654.1|3756621_3758397_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3758397_3759042_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3759040_3759475_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3759563_3762803_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3762994_3764335_+	diacyglycerol O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3764376_3765552_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3765605_3765710_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3765788_3766430_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3766430_3766679_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3766683_3768111_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3768218_3768872_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3768910_3770416_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003902459.1|3770420_3771311_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003918607.1|3771319_3773158_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3773449_3774710_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
