The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007255	Rhodococcus erythropolis R138 chromosome, complete genome	6236862	4506995	4514576	6236862		Paenibacillus_phage(16.67%)	9	NA	NA
WP_029255089.1|4506995_4507469_+	NUDIX domain-containing protein	NA	D0R7J3	Paenibacillus_phage	31.2	1.1e-12
WP_003944744.1|4507544_4508510_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0N7CCA3	Skermania_phage	86.8	7.7e-157
WP_144440134.1|4508773_4509598_+	SPFH domain-containing protein	NA	NA	NA	NA	NA
WP_003944723.1|4509610_4509823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_092763870.1|4509884_4512044_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.2	4.0e-206
WP_003944767.1|4512025_4512505_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A217ER62	Bacillus_phage	30.1	4.5e-09
WP_019747886.1|4512587_4512818_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	64.0	1.5e-21
WP_029255086.1|4513109_4513937_+	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_019747884.1|4514009_4514576_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	33.9	7.3e-06
>prophage 1
NZ_CP007257	Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence	477915	82284	102689	477915	transposase	Enterobacteria_phage(50.0%)	20	NA	NA
WP_144440149.1|82284_82434_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_029256907.1|82996_84058_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_144440150.1|85955_86258_+	LysE family transporter	NA	NA	NA	NA	NA
WP_144440151.1|86228_87296_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.9	7.2e-31
WP_029256938.1|87118_87424_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_158510658.1|87481_87889_+	LysE family transporter	NA	NA	NA	NA	NA
WP_029256962.1|88132_89347_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_081051222.1|89375_89783_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_029256974.1|89902_90391_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029256973.1|90518_91091_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_029256972.1|91141_91507_+	DoxX family protein	NA	NA	NA	NA	NA
WP_144440152.1|91700_91928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051636550.1|93572_94061_-	RidA family protein	NA	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	29.0	9.3e-10
WP_051636549.1|94253_95396_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_029256967.1|95392_96592_-	amidohydrolase	NA	NA	NA	NA	NA
WP_051636548.1|96656_97355_-	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_029256965.1|97587_98886_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	33.4	5.9e-51
WP_144440153.1|99058_100495_+	amino acid permease	NA	NA	NA	NA	NA
WP_029256938.1|101493_101799_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_144440151.1|101621_102689_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.9	7.2e-31
>prophage 2
NZ_CP007257	Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence	477915	111507	164829	477915	transposase	Enterobacteria_phage(28.57%)	52	NA	NA
WP_081051224.1|111507_111672_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_029256956.1|113086_114199_-	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_029256954.1|114529_115267_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.2	5.2e-12
WP_029256953.1|115279_116044_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_029256952.1|116040_117405_-	MFS transporter	NA	NA	NA	NA	NA
WP_029256951.1|117446_118325_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_029256950.1|118329_119331_-	asparaginase	NA	NA	NA	NA	NA
WP_029256949.1|119496_120507_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	29.3	1.1e-20
WP_029256947.1|121725_122298_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_158510660.1|122712_122985_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_081051226.1|123628_123868_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_029256945.1|124021_124336_-	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_081051227.1|124372_125137_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_144440154.1|125375_125873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029256942.1|125923_126286_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_029256941.1|126342_127083_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_029256940.1|127143_128406_+	MFS transporter	NA	NA	NA	NA	NA
WP_081051232.1|128918_129212_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_144440177.1|129998_130085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029256938.1|130164_130470_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_144440151.1|130292_131360_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.9	7.2e-31
WP_081051233.1|131386_132976_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_051636543.1|133637_134417_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_051636542.1|135312_136674_-	aminomethyl transferase family protein	NA	NA	NA	NA	NA
WP_029256933.1|136720_137146_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_029256932.1|137142_138027_-	bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_051636541.1|138147_138939_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029256930.1|139022_139640_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_029256929.1|139672_140740_+	maleylacetate reductase	NA	NA	NA	NA	NA
WP_051636540.1|140762_141692_+	hydroxyquinol 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_037120024.1|141760_142129_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_037120021.1|142217_142730_-	HtaA domain-containing protein	NA	NA	NA	NA	NA
WP_037120018.1|142726_143998_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_029256925.1|143994_144321_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_029256924.1|144321_145524_-	cytochrome P450	NA	NA	NA	NA	NA
WP_029256923.1|145870_147217_-	aminomethyl transferase family protein	NA	NA	NA	NA	NA
WP_051636617.1|147676_148483_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	31.3	1.4e-23
WP_081051236.1|148517_149438_-	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	32.8	1.2e-10
WP_029256920.1|149488_151099_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_029256919.1|151139_152612_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_029256918.1|152743_153151_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_029256917.1|153147_154110_-	oxidoreductase	NA	NA	NA	NA	NA
WP_029256916.1|154118_155417_-	Rieske 2Fe-2S domain-containing protein	NA	A0A0P0YNG8	Yellowstone_lake_phycodnavirus	28.9	4.5e-11
WP_029256915.1|155664_156300_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029256914.1|156512_156935_+	heme-binding protein	NA	NA	NA	NA	NA
WP_029256913.1|157020_158715_-	thiamine pyrophosphate-binding protein	NA	E5EQ70	Micromonas_sp._RCC1109_virus	23.9	1.0e-26
WP_029256912.1|158813_160028_-	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_037120014.1|160173_160965_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029256910.1|161016_161418_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_081051238.1|161508_162333_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_051636539.1|162738_163119_+	5-carboxymethyl-2-hydroxymuconate Delta-isomerase	NA	NA	NA	NA	NA
WP_029256907.1|163767_164829_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP007257	Rhodococcus erythropolis R138 plasmid pLRE138, complete sequence	477915	295249	334283	477915	transposase,integrase	Klosneuvirus(20.0%)	34	291630:291647	319411:319428
291630:291647	attL	GGGTTATGGCCGCAACCC	NA	NA	NA	NA
WP_081051250.1|295249_295609_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_081051251.1|295784_296276_-	flavin reductase	NA	NA	NA	NA	NA
WP_051636668.1|296390_296936_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_158510662.1|297796_299257_+	amino acid permease	NA	NA	NA	NA	NA
WP_081051253.1|300560_302618_+	primary-amine oxidase	NA	A0A1V0SK86	Klosneuvirus	26.2	8.9e-62
WP_059016411.1|302758_303490_+	DUF5134 domain-containing protein	NA	NA	NA	NA	NA
WP_030003100.1|303985_304390_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_029256938.1|304814_305120_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_144440151.1|304942_306010_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.9	7.2e-31
WP_030003099.1|306282_306888_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_081051254.1|307100_307400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_030003097.1|308149_309373_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5EQ73	Micromonas_sp._RCC1109_virus	37.7	8.5e-60
WP_158510663.1|309433_309601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081051255.1|309774_310335_-	VOC family protein	NA	NA	NA	NA	NA
WP_030003095.1|310526_311147_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_030003094.1|311233_311590_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_144440178.1|311640_312399_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	31.9	7.0e-12
WP_081051256.1|312223_312841_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A1B3AZE5	Gordonia_phage	37.7	4.2e-15
WP_081051285.1|313871_315059_-	MFS transporter	NA	NA	NA	NA	NA
WP_030003089.1|316926_317931_-	TIM barrel protein	NA	NA	NA	NA	NA
WP_030003088.1|317927_319067_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_030003087.1|319129_320143_-	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA	NA
319411:319428	attR	GGGTTGCGGCCATAACCC	NA	NA	NA	NA
WP_051636664.1|320139_321048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_030003085.1|321044_322013_-	cyclase family protein	NA	NA	NA	NA	NA
WP_081051286.1|322125_322980_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_158510664.1|323087_324581_-	amino acid permease	NA	NA	NA	NA	NA
WP_081051259.1|324832_326098_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_059016415.1|326167_327826_+	cytochrome P450	NA	NA	NA	NA	NA
WP_081051287.1|327983_329543_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_051636661.1|329600_330314_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_158510665.1|330467_330986_+	VOC family protein	NA	NA	NA	NA	NA
WP_051636660.1|331142_332354_+	MFS transporter	NA	NA	NA	NA	NA
WP_030003076.1|332498_333695_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_158510666.1|333902_334283_+|transposase	transposase	transposase	NA	NA	NA	NA
