assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000696505.1_ASM69650v1	NZ_CP006770	Streptococcus equi subsp. zooepidemicus CY, complete genome	1	1012051-1012160	1	CRISPRCasFinder	no		RT,csm6,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh	Orphan	TTTTAGTATAAGCTGTCATCAACTCAG	27	0	0	NA	NA	NA	1	1	Orphan	RT,csm6,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh	NA|714aa|up_5|NZ_CP006770.1_1005744_1007886_-,NA|152aa|down_1|NZ_CP006770.1_1017120_1017576_+,NA|96aa|down_2|NZ_CP006770.1_1017575_1017863_+,NA|183aa|down_3|NZ_CP006770.1_1017855_1018404_+	NA|375aa|up_9|NZ_CP006770.1_995752_996877_-	PRK07324, PRK07324, transaminase; Validated	NA|1214aa|up_8|NZ_CP006770.1_997139_1000781_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1075aa|up_7|NZ_CP006770.1_1000767_1003992_-	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|465aa|up_6|NZ_CP006770.1_1004202_1005597_-	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|714aa|up_5|NZ_CP006770.1_1005744_1007886_-	NA	NA|478aa|up_4|NZ_CP006770.1_1007892_1009326_-	pfam08757, CotH, CotH kinase protein	NA|226aa|up_3|NZ_CP006770.1_1009331_1010009_-	pfam16316, DUF4956, Domain of unknown function (DUF4956)	NA|232aa|up_2|NZ_CP006770.1_1010022_1010718_-	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|212aa|up_1|NZ_CP006770.1_1010845_1011481_-	pfam13490, zf-HC2, Putative zinc-finger	NA|180aa|up_0|NZ_CP006770.1_1011470_1012010_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|1239aa|down_0|NZ_CP006770.1_1012298_1016015_-	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|152aa|down_1|NZ_CP006770.1_1017120_1017576_+	NA	NA|96aa|down_2|NZ_CP006770.1_1017575_1017863_+	NA	NA|183aa|down_3|NZ_CP006770.1_1017855_1018404_+	NA	NA|397aa|down_4|NZ_CP006770.1_1018582_1019773_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|393aa|down_5|NZ_CP006770.1_1019852_1021031_-	pfam09028, Mac-1, Mac 1	NA|270aa|down_6|NZ_CP006770.1_1021344_1022154_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|481aa|down_7|NZ_CP006770.1_1022234_1023677_-	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|657aa|down_8|NZ_CP006770.1_1023691_1025662_-	pfam05738, Cna_B, Cna protein B-type domain	NA|192aa|down_9|NZ_CP006770.1_1025748_1026324_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_000696505.1_ASM69650v1	NZ_CP006770	Streptococcus equi subsp. zooepidemicus CY, complete genome	2	1026636-1026821	1	CRT	no		RT,csm6,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh	Orphan	CTTAGGTTCNGGTTTTGG	18	2	17	1026702-1026719|1026702-1026719|1026702-1026719|1026702-1026719|1026702-1026719|1026702-1026719|1026702-1026719|1026702-1026719|1026702-1026719|1026702-1026719|1026786-1026803|1026786-1026803|1026786-1026803|1026786-1026803|1026786-1026803|1026786-1026803|1026786-1026803	NZ_CP006770.1_1355442-1355459|NZ_CP006770.1_1355490-1355507|NZ_CP006770.1_1355514-1355531|NZ_CP006770.1_1372509-1372492|NZ_CP006770.1_399320-399337|NZ_CP006770.1_400527-400544|NZ_CP006770.1_1372479-1372462|NZ_CP006770.1_1372527-1372510|NZ_CP006770.1_1533312-1533295|NZ_CP006770.1_1679166-1679183|NZ_CP006770.1_1355430-1355447|NZ_CP006770.1_1355478-1355495|NZ_CP006770.1_1355502-1355519|NZ_CP006770.1_1355454-1355471|NZ_CP006770.1_1355526-1355543|NZ_CP006770.1_1355550-1355567|NZ_CP006770.1_399308-399325	NA	4	4	Orphan	RT,csm6,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh	NA|152aa|up_8|NZ_CP006770.1_1017120_1017576_+,NA|96aa|up_7|NZ_CP006770.1_1017575_1017863_+,NA|183aa|up_6|NZ_CP006770.1_1017855_1018404_+,NA	NA|1239aa|up_9|NZ_CP006770.1_1012298_1016015_-	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|152aa|up_8|NZ_CP006770.1_1017120_1017576_+	NA	NA|96aa|up_7|NZ_CP006770.1_1017575_1017863_+	NA	NA|183aa|up_6|NZ_CP006770.1_1017855_1018404_+	NA	NA|397aa|up_5|NZ_CP006770.1_1018582_1019773_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|393aa|up_4|NZ_CP006770.1_1019852_1021031_-	pfam09028, Mac-1, Mac 1	NA|270aa|up_3|NZ_CP006770.1_1021344_1022154_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|481aa|up_2|NZ_CP006770.1_1022234_1023677_-	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|657aa|up_1|NZ_CP006770.1_1023691_1025662_-	pfam05738, Cna_B, Cna protein B-type domain	NA|192aa|up_0|NZ_CP006770.1_1025748_1026324_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|235aa|down_0|NZ_CP006770.1_1027964_1028669_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|359aa|down_1|NZ_CP006770.1_1028678_1029755_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|802aa|down_2|NZ_CP006770.1_1029989_1032395_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|348aa|down_3|NZ_CP006770.1_1032584_1033628_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|293aa|down_4|NZ_CP006770.1_1034539_1035418_-	smart00892, Endonuclease_NS, DNA/RNA non-specific endonuclease	NA|63aa|down_5|NZ_CP006770.1_1035449_1035638_-	pfam11772, EpuA, DNA-directed RNA polymerase subunit beta	NA|424aa|down_6|NZ_CP006770.1_1035641_1036913_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|79aa|down_7|NZ_CP006770.1_1036976_1037213_-	TIGR02327, conserved_hypothetical_protein, conserved hypothetical integral membrane protein	NA|139aa|down_8|NZ_CP006770.1_1037346_1037763_-	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|469aa|down_9|NZ_CP006770.1_1037775_1039182_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated
GCF_000696505.1_ASM69650v1	NZ_CP006770	Streptococcus equi subsp. zooepidemicus CY, complete genome	3	1299818-1299973	2	CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	RT,csm6,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh	Type I-U, Type I-U?,Type I-C	CAATCCACGCTCCTGCAAAAGGAG	24	0	0	NA	NA	NA	2	2	TypeI-U,TypeI-U?,TypeI-C	RT,csm6,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh	NA,NA	NA|180aa|up_9|NZ_CP006770.1_1289527_1290067_-	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95	NA|331aa|up_8|NZ_CP006770.1_1290236_1291229_-	COG2502, AsnA, Asparagine synthetase A [Amino acid transport and metabolism]	NA|317aa|up_7|NZ_CP006770.1_1291447_1292398_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|444aa|up_6|NZ_CP006770.1_1292415_1293747_-	PRK07205, PRK07205, hypothetical protein; Provisional	NA|498aa|up_5|NZ_CP006770.1_1293763_1295257_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|338aa|up_4|NZ_CP006770.1_1295418_1296432_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|144aa|up_3|NZ_CP006770.1_1296446_1296878_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|412aa|up_2|NZ_CP006770.1_1296887_1298123_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_1|NZ_CP006770.1_1298391_1299072_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_0|NZ_CP006770.1_1299212_1299686_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|163aa|down_0|NZ_CP006770.1_1300329_1300818_-	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|235aa|down_1|NZ_CP006770.1_1301054_1301759_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|363aa|down_2|NZ_CP006770.1_1301773_1302862_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|573aa|down_3|NZ_CP006770.1_1302901_1304620_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|down_4|NZ_CP006770.1_1304616_1305357_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|371aa|down_5|NZ_CP006770.1_1305624_1306737_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|217aa|down_6|NZ_CP006770.1_1306754_1307405_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|down_7|NZ_CP006770.1_1307418_1308129_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_8|NZ_CP006770.1_1310933_1311227_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|342aa|down_9|NZ_CP006770.1_1311237_1312263_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG
GCF_000696505.1_ASM69650v1	NZ_CP006770	Streptococcus equi subsp. zooepidemicus CY, complete genome	4	1309568-1310786	3,2,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	RT,csm6,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh	Type I-U, Type I-U?,Type I-C	ATTTCAATCCACTCGCCCATGAAAGGCGAGAC,ATTTCAATCCACTCGCCCATGAAAGGCGAGAC,ATTTCAATCCACTCGCCCATGAAAGGCGAGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	18,18,16	18	TypeI-U,TypeI-U?,TypeI-C	RT,csm6,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,DEDDh	NA,NA|139aa|down_9|NZ_CP006770.1_1321153_1321570_-	NA|227aa|up_9|NZ_CP006770.1_1298391_1299072_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_8|NZ_CP006770.1_1299212_1299686_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|163aa|up_7|NZ_CP006770.1_1300329_1300818_-	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|235aa|up_6|NZ_CP006770.1_1301054_1301759_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|363aa|up_5|NZ_CP006770.1_1301773_1302862_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|573aa|up_4|NZ_CP006770.1_1302901_1304620_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|NZ_CP006770.1_1304616_1305357_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|371aa|up_2|NZ_CP006770.1_1305624_1306737_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|217aa|up_1|NZ_CP006770.1_1306754_1307405_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_CP006770.1_1307418_1308129_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_CP006770.1_1310933_1311227_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|342aa|down_1|NZ_CP006770.1_1311237_1312263_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|224aa|down_2|NZ_CP006770.1_1312259_1312931_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NZ_CP006770.1_1312932_1313781_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|628aa|down_4|NZ_CP006770.1_1313781_1315665_-	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|240aa|down_5|NZ_CP006770.1_1315664_1316384_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|818aa|down_6|NZ_CP006770.1_1317140_1319594_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|107aa|down_7|NZ_CP006770.1_1320184_1320505_-	pfam15597, Imm59, Immunity protein 59	NA|140aa|down_8|NZ_CP006770.1_1320504_1320924_-	pfam14021, TNT, Tuberculosis necrotizing toxin	NA|139aa|down_9|NZ_CP006770.1_1321153_1321570_-	NA
