assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000695935.1_ASM69593v1	NZ_CP007731	Klebsiella pneumoniae subsp. pneumoniae KPNIH27 chromosome, complete genome	1	789540-789625	1	CRISPRCasFinder	no		DEDDh,cas3,WYL,DinG,RT,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Orphan	AATAAAAACCATAAAAACCACAGT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,DinG,RT,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|160aa|up_9|NZ_CP007731.1_778514_778994_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|283aa|up_8|NZ_CP007731.1_779245_780094_-	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|126aa|up_7|NZ_CP007731.1_780098_780476_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_6|NZ_CP007731.1_780478_781300_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_5|NZ_CP007731.1_781296_782286_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_4|NZ_CP007731.1_782291_783578_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|783aa|up_3|NZ_CP007731.1_783632_785981_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|276aa|up_2|NZ_CP007731.1_786224_787052_+	PRK09430, djlA, co-chaperone DjlA	NA|233aa|up_1|NZ_CP007731.1_787084_787783_-	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|542aa|up_0|NZ_CP007731.1_787772_789398_-	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|455aa|down_0|NZ_CP007731.1_789722_791087_+	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|180aa|down_1|NZ_CP007731.1_791266_791806_+	TIGR03124, citrate_citX, holo-ACP synthase CitX	NA|220aa|down_2|NZ_CP007731.1_791880_792540_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|down_3|NZ_CP007731.1_792552_795459_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|786aa|down_4|NZ_CP007731.1_795646_798004_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|down_5|NZ_CP007731.1_798179_798875_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_6|NZ_CP007731.1_799012_800515_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|570aa|down_7|NZ_CP007731.1_800525_802235_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|282aa|down_8|NZ_CP007731.1_802572_803418_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|256aa|down_9|NZ_CP007731.1_803546_804314_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]
GCF_000695935.1_ASM69593v1	NZ_CP007731	Klebsiella pneumoniae subsp. pneumoniae KPNIH27 chromosome, complete genome	2	1007556-1007695	2	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,WYL,DinG,RT,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Unclear	CTGCTGCTTCAGTTTTGTAGGCCGGGTAAGGCGCCAGCCGCCACCCGGCA	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,DinG,RT,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|194aa|up_9|NZ_CP007731.1_998921_999503_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_8|NZ_CP007731.1_999577_1000345_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_7|NZ_CP007731.1_1000315_1001056_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|448aa|up_6|NZ_CP007731.1_1001467_1002811_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|413aa|up_5|NZ_CP007731.1_1002814_1004053_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|265aa|up_4|NZ_CP007731.1_1004045_1004840_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|213aa|up_3|NZ_CP007731.1_1004832_1005471_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_2|NZ_CP007731.1_1005477_1006074_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|408aa|up_1|NZ_CP007731.1_1006086_1007310_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|72aa|up_0|NZ_CP007731.1_1007312_1007528_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|287aa|down_0|NZ_CP007731.1_1007750_1008611_-	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|352aa|down_1|NZ_CP007731.1_1008770_1009826_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_2|NZ_CP007731.1_1009828_1010281_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|486aa|down_3|NZ_CP007731.1_1010323_1011781_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|153aa|down_4|NZ_CP007731.1_1012038_1012497_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_5|NZ_CP007731.1_1012602_1013847_+	PRK05077, frsA, esterase FrsA	NA|133aa|down_6|NZ_CP007731.1_1013904_1014303_+	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|231aa|down_7|NZ_CP007731.1_1014388_1015081_-	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|467aa|down_8|NZ_CP007731.1_1015126_1016527_-	PRK10197, PRK10197, GABA permease	NA|428aa|down_9|NZ_CP007731.1_1016676_1017960_-	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase
GCF_000695935.1_ASM69593v1	NZ_CP007731	Klebsiella pneumoniae subsp. pneumoniae KPNIH27 chromosome, complete genome	3	1611563-1611645	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,DinG,RT,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Orphan	CCGTAGGCCGGGTAAGGCGTCAGCCGCC	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,DinG,RT,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA,NA|71aa|down_7|NZ_CP007731.1_1618254_1618467_-	NA|362aa|up_9|NZ_CP007731.1_1596631_1597717_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|144aa|up_8|NZ_CP007731.1_1598250_1598682_+	PRK15456, PRK15456, universal stress protein UspG; Provisional	NA|896aa|up_7|NZ_CP007731.1_1598733_1601421_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|428aa|up_6|NZ_CP007731.1_1601694_1602978_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|440aa|up_5|NZ_CP007731.1_1603132_1604452_+	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|319aa|up_4|NZ_CP007731.1_1604448_1605405_+	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|242aa|up_3|NZ_CP007731.1_1605466_1606192_+	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|313aa|up_2|NZ_CP007731.1_1607084_1608023_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|509aa|up_1|NZ_CP007731.1_1608019_1609546_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|461aa|up_0|NZ_CP007731.1_1609644_1611027_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|159aa|down_0|NZ_CP007731.1_1611805_1612282_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_1|NZ_CP007731.1_1612352_1613642_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_2|NZ_CP007731.1_1613855_1614896_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|386aa|down_3|NZ_CP007731.1_1614892_1616050_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_4|NZ_CP007731.1_1616033_1616789_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|241aa|down_5|NZ_CP007731.1_1616781_1617504_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|241aa|down_6|NZ_CP007731.1_1617445_1618168_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|71aa|down_7|NZ_CP007731.1_1618254_1618467_-	NA	NA|674aa|down_8|NZ_CP007731.1_1618878_1620900_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|366aa|down_9|NZ_CP007731.1_1621148_1622246_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB
GCF_000695935.1_ASM69593v1	NZ_CP007731	Klebsiella pneumoniae subsp. pneumoniae KPNIH27 chromosome, complete genome	4	3252961-3253055	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,DinG,RT,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Orphan	TGCACTACCCCCTGGTGAATCTCCTGCAC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,DinG,RT,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA|116aa|up_9|NZ_CP007731.1_3245432_3245780_-,NA|149aa|up_5|NZ_CP007731.1_3248326_3248773_+,NA|86aa|up_4|NZ_CP007731.1_3248678_3248936_-,NA|73aa|down_1|NZ_CP007731.1_3253598_3253817_-,NA|59aa|down_4|NZ_CP007731.1_3255267_3255444_+,NA|138aa|down_5|NZ_CP007731.1_3255448_3255862_+,NA|88aa|down_6|NZ_CP007731.1_3255924_3256188_+,NA|70aa|down_7|NZ_CP007731.1_3256300_3256510_+,NA|92aa|down_8|NZ_CP007731.1_3256550_3256826_+,NA|86aa|down_9|NZ_CP007731.1_3256829_3257087_+	NA|116aa|up_9|NZ_CP007731.1_3245432_3245780_-	NA	NA|180aa|up_8|NZ_CP007731.1_3245776_3246316_-	COG3926, zliS, Lysozyme family protein [General function prediction only]	NA|100aa|up_7|NZ_CP007731.1_3246312_3246612_-	pfam16083, Phage_holin_3_3, LydA holin phage, holin superfamily III	NA|349aa|up_6|NZ_CP007731.1_3247095_3248142_-	pfam00665, rve, Integrase core domain	NA|149aa|up_5|NZ_CP007731.1_3248326_3248773_+	NA	NA|86aa|up_4|NZ_CP007731.1_3248678_3248936_-	NA	NA|261aa|up_3|NZ_CP007731.1_3249089_3249872_-	pfam03589, Antiterm, Antitermination protein	NA|123aa|up_2|NZ_CP007731.1_3249868_3250237_-	pfam05866, RusA, Endodeoxyribonuclease RusA	NA|460aa|up_1|NZ_CP007731.1_3250223_3251603_-	TIGR00665, DnaB, replicative DNA helicase	NA|293aa|up_0|NZ_CP007731.1_3251599_3252478_-	PRK07952, PRK07952, DNA replication protein DnaC; Validated	NA|63aa|down_0|NZ_CP007731.1_3253316_3253505_-	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|73aa|down_1|NZ_CP007731.1_3253598_3253817_-	NA	NA|239aa|down_2|NZ_CP007731.1_3254178_3254895_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|69aa|down_3|NZ_CP007731.1_3255064_3255271_+	TIGR03814, Glutaminase_1, glutaminase A	NA|59aa|down_4|NZ_CP007731.1_3255267_3255444_+	NA	NA|138aa|down_5|NZ_CP007731.1_3255448_3255862_+	NA	NA|88aa|down_6|NZ_CP007731.1_3255924_3256188_+	NA	NA|70aa|down_7|NZ_CP007731.1_3256300_3256510_+	NA	NA|92aa|down_8|NZ_CP007731.1_3256550_3256826_+	NA	NA|86aa|down_9|NZ_CP007731.1_3256829_3257087_+	NA
GCF_000695935.1_ASM69593v1	NZ_CP007731	Klebsiella pneumoniae subsp. pneumoniae KPNIH27 chromosome, complete genome	5	4177526-4179930	5,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,WYL,DinG,RT,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	3	3	4177674-4177705|4177857-4177888|4179383-4179414	NZ_CP007734.1_16591-16622|NZ_CP007731.1_3511225-3511194|NZ_CP007736.1_34897-34928	I-E:I-E:I-E	39,39,38	39	TypeI-E	DEDDh,cas3,WYL,DinG,RT,csa3,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|237aa|up_9|NZ_CP007731.1_4166980_4167691_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|106aa|up_8|NZ_CP007731.1_4167710_4168028_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|109aa|up_7|NZ_CP007731.1_4168168_4168495_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_6|NZ_CP007731.1_4168545_4169151_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_5|NZ_CP007731.1_4169150_4170578_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_4|NZ_CP007731.1_4170587_4171496_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|469aa|up_3|NZ_CP007731.1_4171505_4172912_-	PRK10637, cysG, siroheme synthase CysG	NA|352aa|up_2|NZ_CP007731.1_4173158_4174214_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|396aa|up_1|NZ_CP007731.1_4174249_4175437_+	pfam11340, DUF3142, Protein of unknown function (DUF3142)	NA|674aa|up_0|NZ_CP007731.1_4175423_4177445_+	cd18422, BTB_POZ_KCNG3, BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily G member 3 (KCNG3)	cas2|98aa|down_0|NZ_CP007731.1_4180026_4180320_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP007731.1_4180319_4181240_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|249aa|down_2|NZ_CP007731.1_4181867_4182614_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_3|NZ_CP007731.1_4182624_4183680_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|181aa|down_4|NZ_CP007731.1_4183698_4184241_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_5|NZ_CP007731.1_4184237_4185794_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_6|NZ_CP007731.1_4185805_4188469_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|245aa|down_7|NZ_CP007731.1_4188675_4189410_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_8|NZ_CP007731.1_4189508_4191221_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_9|NZ_CP007731.1_4191220_4193020_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit
