assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000695875.1_ASM69587v1	NZ_CP007690	Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate chromosome, complete genome	1	433450-433550	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_9|NZ_CP007690.1_425022_425232_-,NA|128aa|up_7|NZ_CP007690.1_426056_426440_-,NA|98aa|up_5|NZ_CP007690.1_427393_427687_-,NA|34aa|up_0|NZ_CP007690.1_432674_432776_+,NA|221aa|down_1|NZ_CP007690.1_434640_435303_-,NA|179aa|down_7|NZ_CP007690.1_441394_441931_-	NA|70aa|up_9|NZ_CP007690.1_425022_425232_-	NA	NA|194aa|up_8|NZ_CP007690.1_425409_425991_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP007690.1_426056_426440_-	NA	NA|209aa|up_6|NZ_CP007690.1_426694_427321_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NZ_CP007690.1_427393_427687_-	NA	NA|508aa|up_4|NZ_CP007690.1_427765_429289_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP007690.1_429304_429874_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP007690.1_430365_431121_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP007690.1_431201_432590_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP007690.1_432674_432776_+	NA	NA|319aa|down_0|NZ_CP007690.1_433566_434523_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP007690.1_434640_435303_-	NA	NA|136aa|down_2|NZ_CP007690.1_435445_435853_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP007690.1_436365_436944_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP007690.1_436943_438212_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP007690.1_438249_439716_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP007690.1_439740_441282_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP007690.1_441394_441931_-	NA	NA|235aa|down_8|NZ_CP007690.1_442323_443028_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP007690.1_443426_443699_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000695875.1_ASM69587v1	NZ_CP007690	Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate chromosome, complete genome	2	672615-672707	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP007690.1_669099_669207_+,NA|169aa|down_4|NZ_CP007690.1_676454_676961_+,NA|239aa|down_5|NZ_CP007690.1_677122_677839_+	NA|313aa|up_9|NZ_CP007690.1_663301_664240_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP007690.1_664450_664987_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP007690.1_665155_665632_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP007690.1_665671_666967_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP007690.1_666994_667516_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP007690.1_668014_669025_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP007690.1_669099_669207_+	NA	NA|128aa|up_2|NZ_CP007690.1_669332_669716_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP007690.1_669712_671374_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP007690.1_671761_672397_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP007690.1_672835_673663_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP007690.1_673810_674761_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP007690.1_674815_675535_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP007690.1_675518_676319_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP007690.1_676454_676961_+	NA	NA|239aa|down_5|NZ_CP007690.1_677122_677839_+	NA	NA|263aa|down_6|NZ_CP007690.1_678007_678796_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP007690.1_679046_679421_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|179aa|down_8|NZ_CP007690.1_681136_681673_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|168aa|down_9|NZ_CP007690.1_681653_682157_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_000695875.1_ASM69587v1	NZ_CP007690	Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate chromosome, complete genome	3	748956-749054	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NZ_CP007690.1_746983_747100_+,NA|230aa|down_2|NZ_CP007690.1_750875_751565_-,NA|100aa|down_5|NZ_CP007690.1_752734_753034_+	NA|206aa|up_9|NZ_CP007690.1_738131_738749_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|336aa|up_8|NZ_CP007690.1_738764_739772_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_7|NZ_CP007690.1_740359_741157_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_6|NZ_CP007690.1_741517_742162_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|120aa|up_5|NZ_CP007690.1_745153_745513_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP007690.1_745702_746419_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP007690.1_746418_746892_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP007690.1_746983_747100_+	NA	NA|215aa|up_1|NZ_CP007690.1_747244_747889_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP007690.1_748004_748871_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP007690.1_749071_750292_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_CP007690.1_750288_750777_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_CP007690.1_750875_751565_-	NA	NA|148aa|down_3|NZ_CP007690.1_751691_752135_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|132aa|down_4|NZ_CP007690.1_752201_752597_+	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|100aa|down_5|NZ_CP007690.1_752734_753034_+	NA	NA|181aa|down_6|NZ_CP007690.1_753113_753656_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_CP007690.1_753751_754318_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_CP007690.1_754319_754778_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_CP007690.1_754780_755464_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_000695875.1_ASM69587v1	NZ_CP007690	Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate chromosome, complete genome	4	848356-848441	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	848386-848411|848386-848411|848386-848411|848386-848411|848386-848411	NZ_CP007690.1_811348-811323|NZ_CP007690.1_2830382-2830407|NZ_CP007690.1_2830438-2830463|NZ_CP007690.1_811404-811379|NZ_CP007690.1_954495-954470	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP007690.1_835608_836448_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP007690.1_836621_837272_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP007690.1_837268_837505_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP007690.1_837773_839759_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP007690.1_839766_842613_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP007690.1_843274_844207_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP007690.1_844212_845052_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP007690.1_845059_845545_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP007690.1_845552_846992_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP007690.1_847058_847994_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP007690.1_848873_849785_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP007690.1_849781_850777_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP007690.1_850886_851831_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP007690.1_852404_852992_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP007690.1_853234_854137_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP007690.1_854838_855468_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP007690.1_856227_857241_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP007690.1_857293_858304_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP007690.1_858442_859633_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP007690.1_859754_860516_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_000695875.1_ASM69587v1	NZ_CP007690	Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate chromosome, complete genome	5	891685-891766	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	891709-891742|891709-891742	NZ_CP007690.1_1380702-1380669|NZ_CP007690.1_1469860-1469893	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP007690.1_890587_890701_+,NA	NA|206aa|up_9|NZ_CP007690.1_885442_886060_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP007690.1_886214_886709_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP007690.1_887107_887530_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP007690.1_887677_888394_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP007690.1_888476_889016_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP007690.1_889165_889486_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP007690.1_889629_889986_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP007690.1_890143_890524_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP007690.1_890587_890701_+	NA	NA|293aa|up_0|NZ_CP007690.1_890702_891581_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP007690.1_892322_892709_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP007690.1_892701_892998_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP007690.1_893247_894273_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP007690.1_894265_894961_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP007690.1_894978_895800_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP007690.1_895942_897163_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP007690.1_897250_897979_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP007690.1_898002_898731_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP007690.1_898747_899206_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP007690.1_899217_899550_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_000695875.1_ASM69587v1	NZ_CP007690	Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate chromosome, complete genome	6	954496-954778	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	954526-954551|954526-954551|954526-954551|954526-954551|954640-954665|954640-954665	NZ_CP007690.1_954470-954495|NZ_CP007690.1_811323-811348|NZ_CP007690.1_2830407-2830382|NZ_CP007690.1_2830463-2830438|NZ_CP007690.1_848467-848442|NZ_CP007690.1_394783-394808	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP007690.1_943384_944881_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP007690.1_944873_945203_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP007690.1_945214_945643_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP007690.1_945635_948041_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP007690.1_948171_948555_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP007690.1_948618_949212_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP007690.1_949627_950005_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP007690.1_950366_951494_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP007690.1_951801_952992_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP007690.1_953100_954345_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP007690.1_954847_955777_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP007690.1_956018_957398_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP007690.1_957387_958593_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP007690.1_958943_960275_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP007690.1_960599_961175_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP007690.1_961179_961704_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP007690.1_961719_962295_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP007690.1_962454_965931_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP007690.1_965931_969585_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP007690.1_969750_970653_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000695875.1_ASM69587v1	NZ_CP007690	Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate chromosome, complete genome	7	1088168-1088255	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP007690.1_1088044_1088164_+,NA|45aa|down_0|NZ_CP007690.1_1088264_1088399_-,NA|432aa|down_1|NZ_CP007690.1_1088550_1089846_+	NA|730aa|up_9|NZ_CP007690.1_1076622_1078812_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP007690.1_1078790_1080275_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP007690.1_1080267_1081296_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP007690.1_1081298_1081865_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP007690.1_1081879_1083358_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP007690.1_1083379_1084627_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP007690.1_1084891_1085698_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP007690.1_1085690_1087091_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP007690.1_1087105_1087681_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP007690.1_1088044_1088164_+	NA	NA|45aa|down_0|NZ_CP007690.1_1088264_1088399_-	NA	NA|432aa|down_1|NZ_CP007690.1_1088550_1089846_+	NA	NA|391aa|down_2|NZ_CP007690.1_1090270_1091443_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP007690.1_1091496_1092039_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP007690.1_1092192_1092459_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP007690.1_1092461_1094180_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP007690.1_1094416_1094650_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP007690.1_1094847_1096209_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP007690.1_1096205_1097225_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP007690.1_1097357_1098020_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000695875.1_ASM69587v1	NZ_CP007690	Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate chromosome, complete genome	8	2030202-2030280	7	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2030225-2030257|2030225-2030257|2030225-2030257|2030225-2030257|2030225-2030257|2030225-2030257	NZ_CP007690.1_848422-848454|NZ_CP007690.1_1172531-1172499|NZ_CP007690.1_1380656-1380624|NZ_CP007690.1_1695138-1695170|NZ_CP007690.1_2665033-2665065|NZ_CP007690.1_1469906-1469938	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP007690.1_2024396_2024672_+,NA|129aa|up_1|NZ_CP007690.1_2028657_2029044_-,NA|138aa|down_1|NZ_CP007690.1_2032022_2032436_-,NA|37aa|down_2|NZ_CP007690.1_2032464_2032575_-,NA|31aa|down_6|NZ_CP007690.1_2035580_2035673_-	NA|419aa|up_9|NZ_CP007690.1_2022319_2023576_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP007690.1_2023578_2023779_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP007690.1_2023925_2024390_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP007690.1_2024396_2024672_+	NA	NA|406aa|up_5|NZ_CP007690.1_2024949_2026167_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP007690.1_2026282_2026912_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP007690.1_2026901_2027945_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP007690.1_2027941_2028643_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP007690.1_2028657_2029044_-	NA	NA|253aa|up_0|NZ_CP007690.1_2029260_2030019_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP007690.1_2030546_2031533_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP007690.1_2032022_2032436_-	NA	NA|37aa|down_2|NZ_CP007690.1_2032464_2032575_-	NA	NA|244aa|down_3|NZ_CP007690.1_2032660_2033392_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP007690.1_2033393_2034707_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP007690.1_2034998_2035499_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP007690.1_2035580_2035673_-	NA	DEDDh|185aa|down_7|NZ_CP007690.1_2035887_2036442_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP007690.1_2036509_2037580_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP007690.1_2037826_2038357_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_000695875.1_ASM69587v1	NZ_CP007690	Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate chromosome, complete genome	9	2265154-2265304	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP007690.1_2260025_2260256_-,NA|364aa|up_0|NZ_CP007690.1_2264044_2265136_+,NA|35aa|down_0|NZ_CP007690.1_2265635_2265740_-,NA|31aa|down_2|NZ_CP007690.1_2267851_2267944_+	NA|237aa|up_9|NZ_CP007690.1_2255635_2256346_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP007690.1_2256466_2256910_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP007690.1_2257109_2257523_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP007690.1_2257980_2259354_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP007690.1_2260025_2260256_-	NA	NA|313aa|up_4|NZ_CP007690.1_2260286_2261225_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP007690.1_2261659_2262325_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP007690.1_2262476_2262797_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP007690.1_2262798_2263779_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP007690.1_2264044_2265136_+	NA	NA|35aa|down_0|NZ_CP007690.1_2265635_2265740_-	NA	NA|379aa|down_1|NZ_CP007690.1_2266426_2267563_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP007690.1_2267851_2267944_+	NA	NA|286aa|down_3|NZ_CP007690.1_2268648_2269506_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP007690.1_2269573_2270356_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP007690.1_2270587_2272393_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP007690.1_2273073_2274612_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP007690.1_2274646_2276779_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP007690.1_2276790_2277225_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP007690.1_2277224_2278331_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_000695875.1_ASM69587v1	NZ_CP007690	Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate chromosome, complete genome	10	2389072-2389265	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2389095-2389127|2389095-2389127|2389095-2389127|2389095-2389127|2389095-2389127|2389151-2389186|2389151-2389186|2389151-2389186|2389151-2389186|2389210-2389242|2389210-2389242|2389210-2389242|2389210-2389242	NZ_CP007690.1_848422-848454|NZ_CP007690.1_1172531-1172499|NZ_CP007690.1_1380656-1380624|NZ_CP007690.1_1469906-1469938|NZ_CP007690.1_2665033-2665065|NZ_CP007690.1_1172478-1172443|NZ_CP007690.1_1873626-1873591|NZ_CP007690.1_1695077-1695112|NZ_CP007690.1_2041028-2041063|NZ_CP007690.1_848422-848454|NZ_CP007690.1_1172531-1172499|NZ_CP007690.1_1380656-1380624|NZ_CP007690.1_2665033-2665065	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP007690.1_2379599_2379764_+,NA|106aa|up_8|NZ_CP007690.1_2380008_2380326_+,NA|84aa|up_5|NZ_CP007690.1_2385450_2385702_+,NA|57aa|up_0|NZ_CP007690.1_2388841_2389012_+,NA	NA|55aa|up_9|NZ_CP007690.1_2379599_2379764_+	NA	NA|106aa|up_8|NZ_CP007690.1_2380008_2380326_+	NA	NA|1056aa|up_7|NZ_CP007690.1_2380512_2383680_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP007690.1_2383796_2385062_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP007690.1_2385450_2385702_+	NA	NA|255aa|up_4|NZ_CP007690.1_2385693_2386458_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP007690.1_2386619_2387060_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP007690.1_2387052_2388264_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP007690.1_2388365_2388716_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP007690.1_2388841_2389012_+	NA	NA|341aa|down_0|NZ_CP007690.1_2389406_2390429_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP007690.1_2390448_2391048_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP007690.1_2391054_2391288_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP007690.1_2391293_2391740_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP007690.1_2391753_2392239_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP007690.1_2392235_2393495_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP007690.1_2393557_2394052_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP007690.1_2394053_2394560_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP007690.1_2394590_2395595_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP007690.1_2395764_2396370_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
