assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000685745.1_ASM68574v1	NZ_CP007606	Helicobacter pylori strain BM013B chromosome, complete genome	1	337631-337752	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,cas2,DEDDh	Orphan	GAAGAAATCATTTCAAAAAAACAAGAAGAATT	32	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,cas2,DEDDh	NA|113aa|up_0|NZ_CP007606.1_336897_337236_+,NA|256aa|down_2|NZ_CP007606.1_339333_340101_+	NA|181aa|up_9|NZ_CP007606.1_329947_330490_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_8|NZ_CP007606.1_330422_331361_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_7|NZ_CP007606.1_331357_332140_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_6|NZ_CP007606.1_332388_333381_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_5|NZ_CP007606.1_333404_334211_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_4|NZ_CP007606.1_334207_334441_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|267aa|up_3|NZ_CP007606.1_334447_335248_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_2|NZ_CP007606.1_335244_335649_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|287aa|up_1|NZ_CP007606.1_335923_336784_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|113aa|up_0|NZ_CP007606.1_336897_337236_+	NA	NA|93aa|down_0|NZ_CP007606.1_337836_338115_+	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|129aa|down_1|NZ_CP007606.1_338765_339152_+	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|256aa|down_2|NZ_CP007606.1_339333_340101_+	NA	NA|299aa|down_3|NZ_CP007606.1_341234_342131_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_4|NZ_CP007606.1_342130_343681_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_5|NZ_CP007606.1_343689_345306_-	PRK05380, pyrG, CTP synthetase; Validated	NA|223aa|down_6|NZ_CP007606.1_345562_346231_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_7|NZ_CP007606.1_346274_347978_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|344aa|down_8|NZ_CP007606.1_347995_349027_+	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|260aa|down_9|NZ_CP007606.1_349013_349793_+	PRK06669, fliH, flagellar assembly protein H; Validated
GCF_000685745.1_ASM68574v1	NZ_CP007606	Helicobacter pylori strain BM013B chromosome, complete genome	2	339200-339330	2	CRISPRCasFinder	no		c2c9_V-U4,cas3,cas2,DEDDh	Orphan	GTGTTGTTGGGCTTAATGATAAAAATCCCCCATTTTTT	38	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,cas2,DEDDh	NA|113aa|up_3|NZ_CP007606.1_336897_337236_+,NA|187aa|up_2|NZ_CP007606.1_337219_337780_+,NA|256aa|down_0|NZ_CP007606.1_339333_340101_+	NA|331aa|up_9|NZ_CP007606.1_332388_333381_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_8|NZ_CP007606.1_333404_334211_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_7|NZ_CP007606.1_334207_334441_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|267aa|up_6|NZ_CP007606.1_334447_335248_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_5|NZ_CP007606.1_335244_335649_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|287aa|up_4|NZ_CP007606.1_335923_336784_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|113aa|up_3|NZ_CP007606.1_336897_337236_+	NA	NA|187aa|up_2|NZ_CP007606.1_337219_337780_+	NA	NA|93aa|up_1|NZ_CP007606.1_337836_338115_+	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|129aa|up_0|NZ_CP007606.1_338765_339152_+	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|256aa|down_0|NZ_CP007606.1_339333_340101_+	NA	NA|299aa|down_1|NZ_CP007606.1_341234_342131_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_2|NZ_CP007606.1_342130_343681_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_3|NZ_CP007606.1_343689_345306_-	PRK05380, pyrG, CTP synthetase; Validated	NA|223aa|down_4|NZ_CP007606.1_345562_346231_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_5|NZ_CP007606.1_346274_347978_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|344aa|down_6|NZ_CP007606.1_347995_349027_+	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|260aa|down_7|NZ_CP007606.1_349013_349793_+	PRK06669, fliH, flagellar assembly protein H; Validated	NA|617aa|down_8|NZ_CP007606.1_349795_351646_+	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase	NA|597aa|down_9|NZ_CP007606.1_351660_353451_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional
GCF_000685745.1_ASM68574v1	NZ_CP007606	Helicobacter pylori strain BM013B chromosome, complete genome	3	853270-853366	3	CRISPRCasFinder	no		c2c9_V-U4,cas3,cas2,DEDDh	Orphan	AATTTTACCTTTTTACACATTCTAGCCAAAATTT	34	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,cas2,DEDDh	NA|292aa|up_9|NZ_CP007606.1_839089_839965_-,NA|615aa|up_2|NZ_CP007606.1_848465_850310_-,NA|124aa|down_6|NZ_CP007606.1_861162_861534_-,NA|146aa|down_7|NZ_CP007606.1_864378_864816_+	NA|292aa|up_9|NZ_CP007606.1_839089_839965_-	NA	NA|509aa|up_8|NZ_CP007606.1_840116_841643_-	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|792aa|up_7|NZ_CP007606.1_841966_844342_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|158aa|up_6|NZ_CP007606.1_844342_844816_-	pfam02075, RuvC, Crossover junction endodeoxyribonuclease RuvC	NA|242aa|up_5|NZ_CP007606.1_844946_845672_+	COG1432, COG1432, Uncharacterized conserved protein [Function unknown]	NA|292aa|up_4|NZ_CP007606.1_846881_847757_-	pfam12033, DUF3519, Protein of unknown function (DUF3519)	NA|184aa|up_3|NZ_CP007606.1_847888_848440_-	TIGR00084, Holliday_junction_ATP-dependent_DNA_helicase_RuvA, Holliday junction DNA helicase, RuvA subunit	NA|615aa|up_2|NZ_CP007606.1_848465_850310_-	NA	NA|487aa|up_1|NZ_CP007606.1_850402_851863_+	pfam03023, MVIN, MviN-like protein	NA|466aa|up_0|NZ_CP007606.1_851863_853261_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|1314aa|down_0|NZ_CP007606.1_853546_857488_+	pfam02691, VacA, Vacuolating cyotoxin	NA|256aa|down_1|NZ_CP007606.1_857545_858313_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|327aa|down_2|NZ_CP007606.1_858312_859293_-	pfam01032, FecCD, FecCD transport family	NA|285aa|down_3|NZ_CP007606.1_859285_860140_-	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|175aa|down_4|NZ_CP007606.1_860279_860804_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|89aa|down_5|NZ_CP007606.1_860909_861176_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|124aa|down_6|NZ_CP007606.1_861162_861534_-	NA	NA|146aa|down_7|NZ_CP007606.1_864378_864816_+	NA	NA|371aa|down_8|NZ_CP007606.1_864766_865879_-	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|79aa|down_9|NZ_CP007606.1_865896_866133_-	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
GCF_000685745.1_ASM68574v1	NZ_CP007606	Helicobacter pylori strain BM013B chromosome, complete genome	4	894382-894580	4,1	CRISPRCasFinder,PILER-CR	no		c2c9_V-U4,cas3,cas2,DEDDh	Orphan	AGCTTCAATCAAGGGACTTATCACTTTA,TTCAATCAAGGGACTTATCACTT	28,23	0	0	NA	NA	I-B:I-B	3,3	3	Orphan	c2c9_V-U4,cas3,cas2,DEDDh	NA|207aa|up_9|NZ_CP007606.1_874927_875548_+,NA|220aa|down_8|NZ_CP007606.1_907294_907954_+	NA|207aa|up_9|NZ_CP007606.1_874927_875548_+	NA	NA|384aa|up_8|NZ_CP007606.1_875528_876680_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|679aa|up_7|NZ_CP007606.1_876683_878720_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|518aa|up_6|NZ_CP007606.1_879537_881091_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|532aa|up_5|NZ_CP007606.1_881112_882708_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_4|NZ_CP007606.1_883495_885040_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|144aa|up_3|NZ_CP007606.1_887901_888333_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NZ_CP007606.1_888337_891595_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NZ_CP007606.1_891693_892386_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NZ_CP007606.1_892529_893528_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|365aa|down_0|NZ_CP007606.1_900861_901956_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NZ_CP007606.1_902016_902223_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NZ_CP007606.1_902385_902967_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NZ_CP007606.1_902963_904109_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|317aa|down_4|NZ_CP007606.1_904077_905028_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NZ_CP007606.1_905028_905571_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NZ_CP007606.1_905586_906498_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NZ_CP007606.1_906494_907298_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_8|NZ_CP007606.1_907294_907954_+	NA	NA|201aa|down_9|NZ_CP007606.1_907955_908558_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
