The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007600	Listeria monocytogenes strain CFSAN006122, complete genome	2906670	114063	120590	2906670	tail	uncultured_Caudovirales_phage(33.33%)	10	NA	NA
WP_003724951.1|114063_114882_-|tail	phage tail family protein	tail	A0A2H4JAE4	uncultured_Caudovirales_phage	34.9	1.7e-40
WP_003724950.1|114878_116747_-	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	2.0e-20
WP_003740367.1|116733_117138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721745.1|117179_117482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038406205.1|117529_118042_-|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	63.4	6.9e-48
WP_003728212.1|118054_118444_-	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003724947.1|118723_119140_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	38.6	1.3e-20
WP_003724946.1|119151_119580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721740.1|119796_120132_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003728215.1|120137_120590_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
>prophage 2
NZ_CP007600	Listeria monocytogenes strain CFSAN006122, complete genome	2906670	642997	650842	2906670		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722610.1|642997_643957_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
WP_003725411.1|644076_645060_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.1	4.0e-52
WP_003741152.1|645076_646138_+	galactose mutarotase	NA	NA	NA	NA	NA
WP_003725409.1|646179_647910_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.1	9.5e-174
WP_003722606.1|648017_648893_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_003725408.1|648894_649863_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	3.9e-68
WP_003725407.1|649870_650842_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
>prophage 3
NZ_CP007600	Listeria monocytogenes strain CFSAN006122, complete genome	2906670	1322016	1330302	2906670		Synechococcus_phage(33.33%)	8	NA	NA
WP_003726215.1|1322016_1323309_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
WP_003726214.1|1323389_1324103_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.0e-40
WP_003726213.1|1324114_1324360_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_003726212.1|1324363_1325047_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003726211.1|1325039_1327259_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.7	2.5e-158
WP_003722245.1|1327243_1328671_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_003726210.1|1328689_1329739_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	3.2e-63
WP_003726209.1|1329735_1330302_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.4	8.3e-26
>prophage 4
NZ_CP007600	Listeria monocytogenes strain CFSAN006122, complete genome	2906670	1819658	1878259	2906670	tRNA,protease	Streptococcus_phage(16.67%)	58	NA	NA
WP_003726416.1|1819658_1821365_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003726415.1|1821405_1822668_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_003726414.1|1822681_1823824_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_003727496.1|1823838_1824627_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_031642179.1|1824640_1825399_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.1	3.3e-22
WP_003723450.1|1825629_1826187_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003723449.1|1826186_1826915_-	UMP kinase	NA	NA	NA	NA	NA
WP_003726672.1|1827207_1827582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012681273.1|1827559_1828765_+	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	46.6	7.0e-91
WP_003726670.1|1828754_1830059_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	51.9	4.7e-133
WP_003726669.1|1830068_1830575_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	66.7	1.4e-56
WP_003726668.1|1830596_1831328_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	58.0	2.3e-81
WP_003726667.1|1831376_1831616_-	YneF family protein	NA	NA	NA	NA	NA
WP_003734516.1|1831836_1833831_-	transketolase	NA	NA	NA	NA	NA
WP_003726567.1|1833977_1834205_-	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_003726566.1|1834298_1834628_-	cell division suppressor protein YneA	NA	NA	NA	NA	NA
WP_003723438.1|1834784_1835399_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
WP_003726565.1|1835429_1835954_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003726564.1|1835987_1837283_-	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	62.6	2.5e-147
WP_003723435.1|1837426_1838761_-	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	26.4	2.0e-06
WP_003719570.1|1838831_1839200_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003727505.1|1839401_1840628_-	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_012681271.1|1840620_1841844_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003719566.1|1841954_1842188_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_003726658.1|1842309_1843227_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003723738.1|1843353_1845030_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_003726657.1|1845262_1845961_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	31.9	6.4e-12
WP_003734520.1|1846173_1848060_+	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	32.2	2.9e-43
WP_020830742.1|1848092_1849913_-	class 1 internalin InlK	NA	NA	NA	NA	NA
WP_003726814.1|1850540_1851008_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_003734522.1|1851091_1853551_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.6	1.1e-101
WP_003727510.1|1853547_1855515_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	5.1e-123
WP_003726699.1|1855695_1856103_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_003726698.1|1856260_1856857_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003726697.1|1856898_1857771_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003724130.1|1857773_1858085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003726696.1|1858107_1858527_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003726701.1|1858458_1858677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003726695.1|1858630_1859410_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_003727514.1|1859430_1860840_-|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.8	7.5e-44
WP_003724001.1|1860853_1861393_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_031645173.1|1861413_1862316_-	tyrosine recombinase XerC	NA	A0A142K7N4	Mycobacterium_phage	29.5	1.8e-14
WP_003726401.1|1862598_1863903_-|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_003727517.1|1863965_1866044_-	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	5.4e-107
WP_003726399.1|1866316_1867177_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_003727519.1|1867310_1868096_-	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.6	6.7e-26
WP_003726396.1|1868092_1868956_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003727520.1|1868965_1869508_-	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003726394.1|1869609_1870179_-	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003726393.1|1870213_1870780_-	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003723886.1|1870898_1872158_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003723884.1|1872342_1873626_-	trigger factor	NA	NA	NA	NA	NA
WP_003727521.1|1873740_1874679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003731300.1|1874940_1875606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003727523.1|1875621_1876155_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003727524.1|1876278_1876494_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003723563.1|1876644_1877040_+	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003734523.1|1877119_1878259_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 5
NZ_CP007600	Listeria monocytogenes strain CFSAN006122, complete genome	2906670	2028387	2035313	2906670	integrase	Clostridium_phage(33.33%)	8	2024588:2024601	2029774:2029787
2024588:2024601	attL	CAAAATCAATAAAA	NA	NA	NA	NA
WP_003740555.1|2028387_2029461_-|integrase	site-specific integrase	integrase	A0A0A8WF08	Clostridium_phage	46.5	5.5e-87
WP_003724638.1|2029463_2029661_-	LysR family transcriptional regulator	NA	Q8SBM7	Clostridium_phage	46.3	1.5e-06
WP_003724637.1|2029838_2030318_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JDE4	uncultured_Caudovirales_phage	34.3	7.3e-07
2029774:2029787	attR	TTTTATTGATTTTG	NA	NA	NA	NA
WP_012681222.1|2030516_2032073_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
WP_003724635.1|2032201_2032606_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_003724634.1|2032665_2032974_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003724633.1|2032986_2033811_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	9.7e-68
WP_003724632.1|2033822_2035313_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.5	2.8e-113
