assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000613085.1_R479A_18022011	NZ_HG813247	Listeria monocytogenes R479a	1	213340-213491	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,casR,DEDDh	Unclear	CCAATGCTTCTTGGTTTTAATGCTCCTGCTACATCAGAACCGAGCTC	47	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA	NA|231aa|up_9|NZ_HG813247.1_200538_201231_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_HG813247.1_201227_202436_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_HG813247.1_203120_203429_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_HG813247.1_203548_203857_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_HG813247.1_204243_205617_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_HG813247.1_205667_206624_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_HG813247.1_206666_207380_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_HG813247.1_207650_208604_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_HG813247.1_208845_210435_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_HG813247.1_210765_212298_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_HG813247.1_214451_215321_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_HG813247.1_215392_215716_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_HG813247.1_215850_216312_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_HG813247.1_216362_216695_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|225aa|down_4|NZ_HG813247.1_216761_217436_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_HG813247.1_217512_218454_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_HG813247.1_218747_219371_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_HG813247.1_219460_220045_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_HG813247.1_220151_220712_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_HG813247.1_220826_224366_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_000613085.1_R479A_18022011	NZ_HG813247	Listeria monocytogenes R479a	2	515168-515645	1,1,2	PILER-CR,CRT,CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,TTTTAGTTACTTATTGTGAAATGTAAAT	29,29,28	2	2	515197-515231|515517-515552	NZ_HG813247.1_1259518-1259552|NZ_HG813247.1_1258370-1258405	I-A:I-A:I-A	7,7,7	7	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA|133aa|up_5|NZ_HG813247.1_510157_510556_+,NA|193aa|down_0|NZ_HG813247.1_516036_516615_+	NA|217aa|up_9|NZ_HG813247.1_506220_506871_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_HG813247.1_506979_509040_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_HG813247.1_509043_509646_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_HG813247.1_509673_510141_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_HG813247.1_510157_510556_+	NA	NA|217aa|up_4|NZ_HG813247.1_510566_511217_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_HG813247.1_511213_512260_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_HG813247.1_512275_512569_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_HG813247.1_512583_513855_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_HG813247.1_513994_514930_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_HG813247.1_516036_516615_+	NA	NA|227aa|down_1|NZ_HG813247.1_516721_517402_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_HG813247.1_517426_517786_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_HG813247.1_517792_518251_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_HG813247.1_518632_520468_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_HG813247.1_520568_521000_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_HG813247.1_521046_522477_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_HG813247.1_522597_523413_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|NZ_HG813247.1_523693_524062_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NZ_HG813247.1_524208_525624_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_000613085.1_R479A_18022011	NZ_HG813247	Listeria monocytogenes R479a	3	2782745-2782853	3	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	AGAACTTTCAAAATGTACTTTATTTTGATTTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA|74aa|down_2|NZ_HG813247.1_2783644_2783866_-,NA|52aa|down_4|NZ_HG813247.1_2785807_2785963_+,NA|214aa|down_5|NZ_HG813247.1_2786534_2787176_-	NA|330aa|up_9|NZ_HG813247.1_2774726_2775716_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NZ_HG813247.1_2775737_2776334_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NZ_HG813247.1_2776337_2776712_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NZ_HG813247.1_2776817_2777669_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NZ_HG813247.1_2777787_2778627_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NZ_HG813247.1_2778747_2779590_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NZ_HG813247.1_2779635_2779881_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_HG813247.1_2779895_2780492_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_HG813247.1_2780600_2780918_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NZ_HG813247.1_2780947_2782687_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_HG813247.1_2782977_2783442_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NZ_HG813247.1_2783459_2783642_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_HG813247.1_2783644_2783866_-	NA	NA|455aa|down_3|NZ_HG813247.1_2784000_2785365_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NZ_HG813247.1_2785807_2785963_+	NA	NA|214aa|down_5|NZ_HG813247.1_2786534_2787176_-	NA	NA|505aa|down_6|NZ_HG813247.1_2787873_2789388_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NZ_HG813247.1_2789503_2790442_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NZ_HG813247.1_2790484_2791432_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NZ_HG813247.1_2791572_2793312_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
