assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000612685.1_scf7180000000004	NZ_HG916765	Castellaniella defragrans 65Phen	1	78224-78333	1	CRISPRCasFinder	no		DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	Orphan	GCCTTGGGACGGCCCGGCGGCAGAAAA	27	1	2	78251-78306|78251-78306	NZ_HG916765.1_1298043-1298098|NZ_HG916765.1_1298211-1298266	NA	1	1	Orphan	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	NA,NA	NA|352aa|up_9|NZ_HG916765.1_63778_64834_+	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|383aa|up_8|NZ_HG916765.1_65654_66803_+	cd01139, TroA_f, Periplasmic binding protein TroA_f	NA|318aa|up_7|NZ_HG916765.1_66799_67753_+	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|308aa|up_6|NZ_HG916765.1_67790_68714_+	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|603aa|up_5|NZ_HG916765.1_68963_70772_+	COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|73aa|up_4|NZ_HG916765.1_70842_71061_+	COG3433, COG3433, Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1347aa|up_3|NZ_HG916765.1_71057_75098_+	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF	NA|375aa|up_2|NZ_HG916765.1_75139_76264_+	COG3391, COG3391, Uncharacterized conserved protein [Function unknown]	NA|400aa|up_1|NZ_HG916765.1_76274_77474_+	PRK06923, PRK06923, isochorismate synthase DhbC; Validated	NA|219aa|up_0|NZ_HG916765.1_77493_78150_+	cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems	NA|1580aa|down_0|NZ_HG916765.1_78564_83304_+	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|488aa|down_1|NZ_HG916765.1_83318_84782_+	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|274aa|down_2|NZ_HG916765.1_84947_85769_+	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents	NA|263aa|down_3|NZ_HG916765.1_85765_86554_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|176aa|down_4|NZ_HG916765.1_86593_87121_+	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|280aa|down_5|NZ_HG916765.1_87278_88118_+	pfam04333, MlaA, MlaA lipoprotein	NA|216aa|down_6|NZ_HG916765.1_88197_88845_+	pfam05494, MlaC, MlaC protein	NA|264aa|down_7|NZ_HG916765.1_88959_89751_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|253aa|down_8|NZ_HG916765.1_89780_90539_+	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|84aa|down_9|NZ_HG916765.1_90542_90794_+	COG5007, COG5007, Predicted transcriptional regulator, BolA superfamily [Transcription]
GCF_000612685.1_scf7180000000004	NZ_HG916765	Castellaniella defragrans 65Phen	2	473367-473478	2	CRISPRCasFinder	no		DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	Orphan	ATCGTTCGTCGGTAGGCGCCGGTGGCG	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	NA,NA	NA|291aa|up_9|NZ_HG916765.1_464638_465511_-	PRK06955, PRK06955, biotin--[acetyl-CoA-carboxylase] ligase	NA|215aa|up_8|NZ_HG916765.1_465556_466201_+	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|419aa|up_7|NZ_HG916765.1_466502_467759_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|92aa|up_6|NZ_HG916765.1_467766_468042_+	PRK02047, PRK02047, hypothetical protein; Provisional	NA|245aa|up_5|NZ_HG916765.1_468124_468859_+	PRK14349, PRK14349, lipoyl(octanoyl) transferase LipB	NA|273aa|up_4|NZ_HG916765.1_468797_469616_+	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	NA|260aa|up_3|NZ_HG916765.1_469790_470570_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|362aa|up_2|NZ_HG916765.1_470767_471853_+	TIGR02376, Copper-containing_nitrite_reductase, nitrite reductase, copper-containing	NA|106aa|up_1|NZ_HG916765.1_471907_472225_+	COG3245, CycB, Cytochrome c5 [Energy production and conversion]	NA|345aa|up_0|NZ_HG916765.1_472326_473361_-	pfam03417, AAT, Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase	NA|442aa|down_0|NZ_HG916765.1_474539_475865_+	PRK07483, PRK07483, aspartate aminotransferase family protein	NA|176aa|down_1|NZ_HG916765.1_475962_476490_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|184aa|down_2|NZ_HG916765.1_476480_477032_-	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|145aa|down_3|NZ_HG916765.1_477173_477608_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|101aa|down_4|NZ_HG916765.1_477912_478215_+	pfam11604, CusF_Ec, Copper binding periplasmic protein CusF	NA|440aa|down_5|NZ_HG916765.1_478245_479565_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|178aa|down_6|NZ_HG916765.1_479593_480127_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|659aa|down_7|NZ_HG916765.1_480352_482329_+	COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]	NA|1323aa|down_8|NZ_HG916765.1_482520_486489_+	pfam02514, CobN-Mg_chel, CobN/Magnesium Chelatase	NA|171aa|down_9|NZ_HG916765.1_486485_486998_+	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]
GCF_000612685.1_scf7180000000004	NZ_HG916765	Castellaniella defragrans 65Phen	3	1018240-1018327	3	CRISPRCasFinder	no	cas1,cas8f,cas5f,cas7f,cas6f	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	Type I-F	GTTTGCTGCCGCGCAGGCAGCTTAGAAA	28	0	0	NA	NA	I-F	1	1	TypeI-F	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	NA,NA	NA|301aa|up_9|NZ_HG916765.1_1004845_1005748_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|375aa|up_8|NZ_HG916765.1_1005750_1006875_+	pfam06804, Lipoprotein_18, NlpB/DapX lipoprotein	NA|431aa|up_7|NZ_HG916765.1_1007010_1008303_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|90aa|up_6|NZ_HG916765.1_1008437_1008707_+	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system	NA|49aa|up_5|NZ_HG916765.1_1008754_1008901_+	pfam14384, BrnA_antitoxin, BrnA antitoxin of type II toxin-antitoxin system	NA|484aa|up_4|NZ_HG916765.1_1009019_1010471_-	PRK10637, cysG, siroheme synthase CysG	NA|573aa|up_3|NZ_HG916765.1_1010467_1012186_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|601aa|up_2|NZ_HG916765.1_1012262_1014065_-	TIGR01931, Sulfite_reductase_flavoprotein_alpha-component, sulfite reductase [NADPH] flavoprotein, alpha-component	NA|404aa|up_1|NZ_HG916765.1_1014211_1015423_-	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|866aa|up_0|NZ_HG916765.1_1015526_1018124_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|130aa|down_0|NZ_HG916765.1_1018411_1018801_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|61aa|down_1|NZ_HG916765.1_1018825_1019008_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|681aa|down_2|NZ_HG916765.1_1019177_1021220_+	COG1297, COG1297, Predicted membrane protein [Function unknown]	cas1|336aa|down_3|NZ_HG916765.1_1021334_1022342_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|104aa|down_4|NZ_HG916765.1_1025765_1026077_-	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	cas8f|459aa|down_5|NZ_HG916765.1_1026591_1027968_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|348aa|down_6|NZ_HG916765.1_1027964_1029008_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|342aa|down_7|NZ_HG916765.1_1029044_1030070_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|189aa|down_8|NZ_HG916765.1_1030075_1030642_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|438aa|down_9|NZ_HG916765.1_1031003_1032317_-	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1
GCF_000612685.1_scf7180000000004	NZ_HG916765	Castellaniella defragrans 65Phen	4	1032420-1033227	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas8f,cas5f,cas7f,cas6f	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	Type I-F	GTTCGCTGCCGCGCAGGCAGCTGAGAAA,GTTCGCTGCCGCGCAGGCAGCTGAGAAA,GTTCGCTGCCGCGCAGGCAGCTGAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	13,13,13	13	TypeI-F	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	NA,NA|64aa|down_3|NZ_HG916765.1_1041320_1041512_-	NA|130aa|up_9|NZ_HG916765.1_1018411_1018801_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|61aa|up_8|NZ_HG916765.1_1018825_1019008_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|681aa|up_7|NZ_HG916765.1_1019177_1021220_+	COG1297, COG1297, Predicted membrane protein [Function unknown]	cas1|336aa|up_6|NZ_HG916765.1_1021334_1022342_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|104aa|up_5|NZ_HG916765.1_1025765_1026077_-	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	cas8f|459aa|up_4|NZ_HG916765.1_1026591_1027968_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|348aa|up_3|NZ_HG916765.1_1027964_1029008_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|342aa|up_2|NZ_HG916765.1_1029044_1030070_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|189aa|up_1|NZ_HG916765.1_1030075_1030642_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|438aa|up_0|NZ_HG916765.1_1031003_1032317_-	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|505aa|down_0|NZ_HG916765.1_1033381_1034896_+	pfam05598, DUF772, Transposase domain (DUF772)	NA|358aa|down_1|NZ_HG916765.1_1038494_1039568_+	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|387aa|down_2|NZ_HG916765.1_1039816_1040977_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|64aa|down_3|NZ_HG916765.1_1041320_1041512_-	NA	NA|283aa|down_4|NZ_HG916765.1_1041529_1042378_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|339aa|down_5|NZ_HG916765.1_1042481_1043498_-	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase	NA|271aa|down_6|NZ_HG916765.1_1043490_1044303_-	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|261aa|down_7|NZ_HG916765.1_1044412_1045195_+	cd01639, IMPase, IMPase, inositol monophosphatase and related domains	NA|526aa|down_8|NZ_HG916765.1_1045207_1046785_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|255aa|down_9|NZ_HG916765.1_1046858_1047623_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional
GCF_000612685.1_scf7180000000004	NZ_HG916765	Castellaniella defragrans 65Phen	5	1034962-1038293	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas8f,cas5f,cas7f,cas6f	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	Type I-F	GTTCGCTGCCGCGCAGGCAGCTGAGAAA,GTTCGCTGCCGCGCAGGCAGCTGAGAAA,GTTCGCTGCCGCGCAGGCAGCTGAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	54,55,55	55	TypeI-F	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	NA,NA|64aa|down_2|NZ_HG916765.1_1041320_1041512_-	NA|61aa|up_9|NZ_HG916765.1_1018825_1019008_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|681aa|up_8|NZ_HG916765.1_1019177_1021220_+	COG1297, COG1297, Predicted membrane protein [Function unknown]	cas1|336aa|up_7|NZ_HG916765.1_1021334_1022342_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|104aa|up_6|NZ_HG916765.1_1025765_1026077_-	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	cas8f|459aa|up_5|NZ_HG916765.1_1026591_1027968_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|348aa|up_4|NZ_HG916765.1_1027964_1029008_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|342aa|up_3|NZ_HG916765.1_1029044_1030070_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|189aa|up_2|NZ_HG916765.1_1030075_1030642_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|438aa|up_1|NZ_HG916765.1_1031003_1032317_-	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|505aa|up_0|NZ_HG916765.1_1033381_1034896_+	pfam05598, DUF772, Transposase domain (DUF772)	NA|358aa|down_0|NZ_HG916765.1_1038494_1039568_+	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|387aa|down_1|NZ_HG916765.1_1039816_1040977_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|64aa|down_2|NZ_HG916765.1_1041320_1041512_-	NA	NA|283aa|down_3|NZ_HG916765.1_1041529_1042378_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|339aa|down_4|NZ_HG916765.1_1042481_1043498_-	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase	NA|271aa|down_5|NZ_HG916765.1_1043490_1044303_-	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|261aa|down_6|NZ_HG916765.1_1044412_1045195_+	cd01639, IMPase, IMPase, inositol monophosphatase and related domains	NA|526aa|down_7|NZ_HG916765.1_1045207_1046785_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|255aa|down_8|NZ_HG916765.1_1046858_1047623_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|214aa|down_9|NZ_HG916765.1_1047615_1048257_-	PRK10791, PRK10791, peptidylprolyl isomerase B
GCF_000612685.1_scf7180000000004	NZ_HG916765	Castellaniella defragrans 65Phen	6	2561016-2561138	6	CRISPRCasFinder	no		DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	Orphan	TTTCGCCGCCGGGCCGCCCCAAGGCGAAAAGCGCCCC	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	NA,NA	NA|231aa|up_9|NZ_HG916765.1_2554121_2554814_-	PRK12700, flgH, flagellar basal body L-ring protein; Reviewed	NA|262aa|up_8|NZ_HG916765.1_2554825_2555611_-	PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed	NA|250aa|up_7|NZ_HG916765.1_2555642_2556392_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|410aa|up_6|NZ_HG916765.1_2556407_2557637_-	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|229aa|up_5|NZ_HG916765.1_2557706_2558393_-	PRK12633, flgD, flagellar basal body rod modification protein; Provisional	NA|136aa|up_4|NZ_HG916765.1_2558404_2558812_-	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|138aa|up_3|NZ_HG916765.1_2558835_2559249_-	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|233aa|up_2|NZ_HG916765.1_2559509_2560208_+	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA	NA|96aa|up_1|NZ_HG916765.1_2560293_2560581_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|146aa|up_0|NZ_HG916765.1_2560577_2561015_+	pfam05130, FlgN, FlgN protein	NA|705aa|down_0|NZ_HG916765.1_2563596_2565711_-	PRK06012, flhA, flagellar type III secretion system protein FlhA	NA|388aa|down_1|NZ_HG916765.1_2565707_2566871_-	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|517aa|down_2|NZ_HG916765.1_2566960_2568511_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|216aa|down_3|NZ_HG916765.1_2568693_2569341_-	PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional	NA|128aa|down_4|NZ_HG916765.1_2569351_2569735_-	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins	NA|356aa|down_5|NZ_HG916765.1_2569800_2570868_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|282aa|down_6|NZ_HG916765.1_2570890_2571736_-	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR	NA|580aa|down_7|NZ_HG916765.1_2571763_2573503_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|167aa|down_8|NZ_HG916765.1_2573563_2574064_-	PRK10612, PRK10612, chemotaxis protein CheW	NA|725aa|down_9|NZ_HG916765.1_2574086_2576261_-	PRK10547, PRK10547, chemotaxis protein CheA; Provisional
GCF_000612685.1_scf7180000000004	NZ_HG916765	Castellaniella defragrans 65Phen	7	2735430-2735527	7	CRISPRCasFinder	no		DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	Orphan	GCCGCATCACCCGGCGCGGGATG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	NA|125aa|up_1|NZ_HG916765.1_2733257_2733632_-,NA	NA|292aa|up_9|NZ_HG916765.1_2723918_2724794_+	PRK05457, PRK05457, protease HtpX	NA|552aa|up_8|NZ_HG916765.1_2724819_2726475_+	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism]	NA|907aa|up_7|NZ_HG916765.1_2726545_2729266_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|224aa|up_6|NZ_HG916765.1_2729264_2729936_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|263aa|up_5|NZ_HG916765.1_2730088_2730877_+	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold	NA|230aa|up_4|NZ_HG916765.1_2731047_2731737_+	PRK15135, PRK15135, histidine ABC transporter permease HisQ	NA|237aa|up_3|NZ_HG916765.1_2731733_2732444_+	PRK15069, PRK15069, histidine ABC transporter permease HisM	NA|256aa|up_2|NZ_HG916765.1_2732465_2733233_+	COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]	NA|125aa|up_1|NZ_HG916765.1_2733257_2733632_-	NA	NA|377aa|up_0|NZ_HG916765.1_2734260_2735391_+	pfam14261, DUF4351, Domain of unknown function (DUF4351)	NA|225aa|down_0|NZ_HG916765.1_2736843_2737518_+	cd07003, cupin_YobQ-like_N, Bacillus subtilis YobQ and related proteins, N-terminal cupin domain	NA|305aa|down_1|NZ_HG916765.1_2737703_2738618_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|607aa|down_2|NZ_HG916765.1_2738790_2740611_-	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|253aa|down_3|NZ_HG916765.1_2740607_2741366_-	PRK00020, truB, tRNA pseudouridine synthase B; Provisional	NA|137aa|down_4|NZ_HG916765.1_2741401_2741812_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|966aa|down_5|NZ_HG916765.1_2741828_2744726_-	PRK05306, infB, translation initiation factor IF-2; Validated	NA|495aa|down_6|NZ_HG916765.1_2744781_2746266_-	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|157aa|down_7|NZ_HG916765.1_2746262_2746733_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|557aa|down_8|NZ_HG916765.1_2747048_2748719_-	PRK10700, PRK10700, 23S rRNA pseudouridine(2605) synthase RluB	NA|239aa|down_9|NZ_HG916765.1_2748753_2749470_-	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB
GCF_000612685.1_scf7180000000004	NZ_HG916765	Castellaniella defragrans 65Phen	8	3107831-3107907	8	CRISPRCasFinder	no		DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	Orphan	CCGCCACCGGATCCGCCTCTGAGTCCGCC	29	1	1	3107860-3107878	NZ_HG916765.1_3107908-3107926	NA	1	1	Orphan	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	NA,NA	NA|389aa|up_9|NZ_HG916765.1_3097631_3098798_+	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase	NA|296aa|up_8|NZ_HG916765.1_3098943_3099831_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|310aa|up_7|NZ_HG916765.1_3099955_3100885_-	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|494aa|up_6|NZ_HG916765.1_3100877_3102359_-	cd05682, M20_dipept_dapE, uncharacterized M20 dipeptidase	NA|76aa|up_5|NZ_HG916765.1_3102493_3102721_+	pfam11534, HTHP, Hexameric tyrosine-coordinated heme protein (HTHP)	NA|206aa|up_4|NZ_HG916765.1_3102721_3103339_+	pfam11161, DUF2944, Protein of unknown function (DUF2946)	NA|390aa|up_3|NZ_HG916765.1_3103602_3104772_+	cd01159, NcnH, Naphthocyclinone hydroxylase	NA|319aa|up_2|NZ_HG916765.1_3104784_3105741_+	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|314aa|up_1|NZ_HG916765.1_3105807_3106749_-	TIGR02297, AraC-type_DNA-binding_domain-containing_protein, 4-hydroxyphenylacetate catabolism regulatory protein HpaA	NA|196aa|up_0|NZ_HG916765.1_3106935_3107523_+	cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|246aa|down_0|NZ_HG916765.1_3108676_3109414_+	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	NA|348aa|down_1|NZ_HG916765.1_3109463_3110507_+	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|524aa|down_2|NZ_HG916765.1_3110625_3112197_-	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase	NA|314aa|down_3|NZ_HG916765.1_3112280_3113222_-	cd08435, PBP2_GbpR, The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold	NA|335aa|down_4|NZ_HG916765.1_3113347_3114352_+	COG3802, GguC, Uncharacterized protein conserved in bacteria [Function unknown]	NA|251aa|down_5|NZ_HG916765.1_3114655_3115408_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|218aa|down_6|NZ_HG916765.1_3115404_3116058_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|243aa|down_7|NZ_HG916765.1_3116069_3116798_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|267aa|down_8|NZ_HG916765.1_3116835_3117636_+	cd01072, PBP2_SMa0082_like, The substrate-binding domain of putatuve amino acid transporter; the type 2 periplasmic binding protein fold	NA|509aa|down_9|NZ_HG916765.1_3117697_3119224_+	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus
GCF_000612685.1_scf7180000000004	NZ_HG916765	Castellaniella defragrans 65Phen	9	3135700-3135787	9	CRISPRCasFinder	no		DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	Orphan	CCCATGAGCGTGCCGGGCCGTCCCC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	NA,NA	NA|1054aa|up_9|NZ_HG916765.1_3123606_3126768_-	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|477aa|up_8|NZ_HG916765.1_3126764_3128195_-	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|191aa|up_7|NZ_HG916765.1_3128545_3129118_-	TIGR01841, hypothetical_protein, phasin family protein	NA|277aa|up_6|NZ_HG916765.1_3129348_3130179_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|292aa|up_5|NZ_HG916765.1_3130300_3131176_-	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|264aa|up_4|NZ_HG916765.1_3131191_3131983_-	pfam07264, EI24, Etoposide-induced protein 2	NA|128aa|up_3|NZ_HG916765.1_3132047_3132431_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|307aa|up_2|NZ_HG916765.1_3134069_3134990_+	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|71aa|up_1|NZ_HG916765.1_3135051_3135264_+	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|up_0|NZ_HG916765.1_3135272_3135695_+	pfam13474, SnoaL_3, SnoaL-like domain	NA|361aa|down_0|NZ_HG916765.1_3135827_3136910_+	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|119aa|down_1|NZ_HG916765.1_3137006_3137363_-	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|376aa|down_2|NZ_HG916765.1_3137407_3138535_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|94aa|down_3|NZ_HG916765.1_3139952_3140234_-	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain	NA|356aa|down_4|NZ_HG916765.1_3140499_3141567_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|343aa|down_5|NZ_HG916765.1_3141637_3142666_-	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold	NA|301aa|down_6|NZ_HG916765.1_3142865_3143768_+	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional	NA|460aa|down_7|NZ_HG916765.1_3143823_3145203_-	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	NA|286aa|down_8|NZ_HG916765.1_3145337_3146195_-	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|384aa|down_9|NZ_HG916765.1_3146352_3147504_+	PRK06996, PRK06996, UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
GCF_000612685.1_scf7180000000004	NZ_HG916765	Castellaniella defragrans 65Phen	10	3172541-3172651	10	CRISPRCasFinder	no		DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	Orphan	GCCTTGGGGCGGCCCGGCGGCAAAAAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	NA,NA	NA|350aa|up_9|NZ_HG916765.1_3159494_3160544_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|444aa|up_8|NZ_HG916765.1_3160540_3161872_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|285aa|up_7|NZ_HG916765.1_3163794_3164649_+	PRK00030, minC, septum site-determining protein MinC	NA|272aa|up_6|NZ_HG916765.1_3164805_3165621_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|89aa|up_5|NZ_HG916765.1_3165623_3165890_+	PRK13989, PRK13989, cell division topological specificity factor MinE; Provisional	NA|295aa|up_4|NZ_HG916765.1_3166038_3166923_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|602aa|up_3|NZ_HG916765.1_3167071_3168877_-	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional	NA|205aa|up_2|NZ_HG916765.1_3169068_3169683_-	TIGR02287, Phenylacetic_acid_degradation_protein_PaaY, phenylacetic acid degradation protein PaaY	NA|480aa|up_1|NZ_HG916765.1_3169794_3171234_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_0|NZ_HG916765.1_3171550_3172438_+	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs	NA|76aa|down_0|NZ_HG916765.1_3172696_3172924_-	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB	NA|186aa|down_1|NZ_HG916765.1_3173101_3173659_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|558aa|down_2|NZ_HG916765.1_3174000_3175674_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|170aa|down_3|NZ_HG916765.1_3175864_3176374_+	pfam10486, PI3K_1B_p101, Phosphoinositide 3-kinase gamma adapter protein p101 subunit	NA|321aa|down_4|NZ_HG916765.1_3176498_3177461_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|187aa|down_5|NZ_HG916765.1_3177891_3178452_-	COG2353, COG2353, Uncharacterized conserved protein [Function unknown]	NA|1893aa|down_6|NZ_HG916765.1_3178662_3184341_+	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]	NA|293aa|down_7|NZ_HG916765.1_3184748_3185627_+	PRK07508, PRK07508, aminodeoxychorismate synthase component I	NA|246aa|down_8|NZ_HG916765.1_3185758_3186496_+	PRK07546, PRK07546, hypothetical protein; Provisional	NA|121aa|down_9|NZ_HG916765.1_3186638_3187001_+	pfam10779, XhlA, Haemolysin XhlA
GCF_000612685.1_scf7180000000004	NZ_HG916765	Castellaniella defragrans 65Phen	11	3299513-3299613	11	CRISPRCasFinder	no		DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	Orphan	CCCGGCCCCGCCCCATCGCCCGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas1,cas8f,cas5f,cas7f,cas6f,csa3,RT,WYL,DinG	NA,NA|93aa|down_5|NZ_HG916765.1_3310484_3310763_+,NA|46aa|down_6|NZ_HG916765.1_3310965_3311103_-	NA|302aa|up_9|NZ_HG916765.1_3289200_3290106_-	cd07246, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|225aa|up_8|NZ_HG916765.1_3290258_3290933_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|170aa|up_7|NZ_HG916765.1_3291095_3291605_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|72aa|up_6|NZ_HG916765.1_3291692_3291908_-	COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]	NA|136aa|up_5|NZ_HG916765.1_3292019_3292427_-	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase	NA|150aa|up_4|NZ_HG916765.1_3292380_3292830_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|960aa|up_3|NZ_HG916765.1_3292997_3295877_-	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|124aa|up_2|NZ_HG916765.1_3295943_3296315_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|361aa|up_1|NZ_HG916765.1_3296390_3297473_-	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|395aa|up_0|NZ_HG916765.1_3297869_3299054_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|755aa|down_0|NZ_HG916765.1_3300687_3302952_-	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|188aa|down_1|NZ_HG916765.1_3302957_3303521_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|526aa|down_2|NZ_HG916765.1_3303600_3305178_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|640aa|down_3|NZ_HG916765.1_3307292_3309212_-	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|362aa|down_4|NZ_HG916765.1_3309211_3310297_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|93aa|down_5|NZ_HG916765.1_3310484_3310763_+	NA	NA|46aa|down_6|NZ_HG916765.1_3310965_3311103_-	NA	NA|690aa|down_7|NZ_HG916765.1_3311345_3313415_+	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|404aa|down_8|NZ_HG916765.1_3313434_3314646_-	PRK10537, PRK10537, voltage-gated potassium channel protein	NA|298aa|down_9|NZ_HG916765.1_3314729_3315623_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
