The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_HG916765	Castellaniella defragrans 65Phen	3952818	201373	208730	3952818	integrase,transposase	Salmonella_phage(16.67%)	8	191833:191847	202863:202877
191833:191847	attL	GCGCAGCAGGCGGCG	NA	NA	NA	NA
WP_043679149.1|201373_202564_+|integrase	site-specific integrase	integrase	T1S9J3	Salmonella_phage	41.5	1.5e-72
WP_043679151.1|202742_203060_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
202863:202877	attR	CGCCGCCTGCTGCGC	NA	NA	NA	NA
WP_043679153.1|203086_204079_+	restriction endonuclease	NA	A0A1B1IUE7	uncultured_Mediterranean_phage	25.4	2.3e-23
WP_148304855.1|204171_205686_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	54.9	1.7e-81
WP_084330784.1|205806_206166_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	40.9	8.9e-18
WP_043679159.1|206162_206516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_084330434.1|206616_207936_+|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	30.6	2.0e-30
WP_173424572.1|207932_208730_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	46.0	1.8e-58
>prophage 2
NZ_HG916765	Castellaniella defragrans 65Phen	3952818	619237	654008	3952818	coat,tRNA	Acidithiobacillus_phage(51.61%)	40	NA	NA
WP_084330473.1|619237_620185_+	site-specific DNA-methyltransferase	NA	A0A1X9SII3	Staphylococcus_phage	22.3	1.4e-09
WP_148305021.1|620185_620794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043679871.1|621387_622068_-	membrane protein	NA	J9Q7Y7	Salmonella_phage	50.4	3.3e-61
WP_043679874.1|622064_622328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052355550.1|622399_622765_-	hypothetical protein	NA	A0A0S0N7C5	Pseudomonas_phage	29.3	3.0e-05
WP_043679877.1|622781_623243_-	hypothetical protein	NA	M4QQ67	Salicola_phage	38.7	2.7e-06
WP_043679880.1|623500_624649_-|coat	coat protein	coat	G8C7P7	Escherichia_phage	55.5	1.0e-107
WP_043679882.1|624756_625512_-	hypothetical protein	NA	G8C7P6	Escherichia_phage	49.8	4.0e-60
WP_043679885.1|625861_626914_-	hypothetical protein	NA	A0A0S2SY77	Pseudomonas_phage	36.6	7.3e-52
WP_043679889.1|626924_628322_-	DUF4055 domain-containing protein	NA	A0A0H5AWC7	Pseudomonas_phage	44.7	8.7e-93
WP_043679891.1|628324_629578_-	hypothetical protein	NA	A0A2R3UAD4	Siphoviridae_environmental_samples	49.3	2.0e-109
WP_052355551.1|629593_630109_-	hypothetical protein	NA	A0A2H4J1J5	uncultured_Caudovirales_phage	47.3	1.1e-21
WP_043679894.1|630236_630449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158386225.1|630478_630643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043679896.1|630687_631260_+	DUF3489 domain-containing protein	NA	K4HZZ2	Acidithiobacillus_phage	46.9	2.3e-28
WP_084330477.1|631285_631756_-	hypothetical protein	NA	A0A2H4J2P5	uncultured_Caudovirales_phage	49.3	5.1e-29
WP_043679899.1|631786_633040_-	site-specific DNA-methyltransferase	NA	K4HZA5	Acidithiobacillus_phage	71.6	9.6e-168
WP_043679902.1|633068_634469_-	site-specific DNA-methyltransferase	NA	K4I3Y2	Acidithiobacillus_phage	62.0	3.7e-160
WP_043679905.1|634539_634926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_084330478.1|635147_635987_-	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	37.8	6.7e-48
WP_148305022.1|636070_636388_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_043679910.1|636462_636933_-	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	73.4	2.3e-58
WP_043679914.1|637052_639317_-	hypothetical protein	NA	K4HZY1	Acidithiobacillus_phage	66.4	1.7e-300
WP_052355553.1|639300_639576_-	hypothetical protein	NA	K4I1D6	Acidithiobacillus_phage	53.2	2.4e-15
WP_043679919.1|639572_640310_-	hypothetical protein	NA	K4HZA0	Acidithiobacillus_phage	69.3	2.1e-93
WP_043679922.1|640306_640789_-	hypothetical protein	NA	K4I3X7	Acidithiobacillus_phage	58.3	3.1e-50
WP_043679926.1|640798_641455_-	hypothetical protein	NA	K4ICM8	Acidithiobacillus_phage	68.6	1.9e-74
WP_043679936.1|641461_642289_-	ATP-binding protein	NA	K4HZX9	Acidithiobacillus_phage	79.0	4.2e-127
WP_043679938.1|642288_643050_-	antirepressor	NA	K4I1D2	Acidithiobacillus_phage	62.5	8.1e-85
WP_043685628.1|643052_643529_-	hypothetical protein	NA	K4HZ96	Acidithiobacillus_phage	45.6	2.2e-32
WP_148304868.1|643918_646189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043679949.1|646516_646960_+	DUF2924 domain-containing protein	NA	K4I3X1	Acidithiobacillus_phage	71.2	4.1e-57
WP_043679951.1|646956_648333_+	recombinase family protein	NA	K4ICM1	Acidithiobacillus_phage	75.5	2.2e-197
WP_043679954.1|648332_648692_+	hypothetical protein	NA	K4HZX2	Acidithiobacillus_phage	46.6	1.5e-20
WP_043679956.1|648701_649163_+	hypothetical protein	NA	K4I1C7	Acidithiobacillus_phage	37.1	2.0e-22
WP_043679960.1|649218_649911_+	SOS response-associated peptidase family protein	NA	A0A1S5NTJ1	Burkholderia_phage	29.5	1.6e-15
WP_043679962.1|649928_650141_-	hypothetical protein	NA	A0A0C5AEJ6	Paenibacillus_phage	56.1	1.4e-15
WP_043679964.1|650180_651056_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_043679966.1|651567_652845_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_043679968.1|652928_654008_+	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	42.9	1.5e-07
>prophage 3
NZ_HG916765	Castellaniella defragrans 65Phen	3952818	1480110	1492588	3952818	tail,terminase,protease,head,tRNA,capsid,integrase,portal	Escherichia_phage(22.22%)	16	1482188:1482206	1497880:1497898
WP_043681375.1|1480110_1481448_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.8	7.8e-83
WP_052355657.1|1481542_1481911_-	hypothetical protein	NA	NA	NA	NA	NA
1482188:1482206	attL	ATCCCACCCTCTCCGCCAG	NA	NA	NA	NA
WP_043681378.1|1482279_1482555_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4J711	uncultured_Caudovirales_phage	40.6	4.2e-07
WP_043681381.1|1482551_1482863_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_043681385.1|1483154_1484651_-|terminase	terminase large subunit	terminase	Q9MCV7	Escherichia_phage	63.9	2.2e-179
WP_043681388.1|1484647_1485109_-	hypothetical protein	NA	Q77WA1	Escherichia_phage	36.6	2.5e-12
WP_173424578.1|1485117_1485546_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_043681391.1|1485545_1486727_-|portal	phage portal protein	portal	A0A2K5B287	Erysipelothrix_phage	39.2	1.0e-62
WP_043681394.1|1486723_1487272_-|head,protease	HK97 family phage prohead protease	head,protease	B4UTP2	Rhizobium_phage	46.3	4.5e-29
WP_043681397.1|1487271_1488489_-|capsid	phage major capsid protein	capsid	Q6R4V3	Vibrio_virus	28.4	2.8e-31
WP_043681400.1|1488590_1488920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_084330552.1|1488919_1490134_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_043681403.1|1490124_1490553_-	DNA primase	NA	NA	NA	NA	NA
WP_052356049.1|1490566_1490803_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	46.6	4.2e-08
WP_148304900.1|1490891_1491398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052355659.1|1491394_1492588_-|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	47.4	3.3e-93
1497880:1497898	attR	ATCCCACCCTCTCCGCCAG	NA	NA	NA	NA
>prophage 4
NZ_HG916765	Castellaniella defragrans 65Phen	3952818	1873772	1881936	3952818	tRNA	Moraxella_phage(28.57%)	9	NA	NA
WP_043682059.1|1873772_1875374_+	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	26.8	4.1e-54
WP_043682060.1|1875502_1876120_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	40.5	3.4e-17
WP_043682061.1|1876172_1876553_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	41.7	5.4e-13
WP_043682062.1|1876924_1878217_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	37.8	1.2e-67
WP_043682063.1|1878404_1879451_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	52.8	1.7e-96
WP_043682064.1|1879594_1880239_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_043682065.1|1880351_1881119_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.6	2.1e-64
WP_043682067.1|1881115_1881301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052355712.1|1881255_1881936_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	45.8	2.3e-30
>prophage 5
NZ_HG916765	Castellaniella defragrans 65Phen	3952818	2285042	2351784	3952818	holin,transposase	Leptospira_phage(12.5%)	56	NA	NA
WP_043680954.1|2285042_2286356_-|transposase	IS1380 family transposase	transposase	NA	NA	NA	NA
WP_158386269.1|2286728_2286869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_084330784.1|2286865_2287225_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	40.9	8.9e-18
WP_084330628.1|2287246_2288980_+|transposase	IS66 family transposase	transposase	S5VLC8	Leptospira_phage	37.8	4.9e-45
WP_158386323.1|2289062_2289254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043686799.1|2289324_2289969_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_043682723.1|2289970_2291071_-	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_043682726.1|2291197_2292649_-	flagellin	NA	NA	NA	NA	NA
WP_043682728.1|2292769_2293825_-	glycosyltransferase	NA	S5WBE2	Pseudomonas_phage	26.8	4.7e-06
WP_052355776.1|2293925_2294927_-	DUF4351 domain-containing protein	NA	NA	NA	NA	NA
WP_043682731.1|2296600_2297452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158386275.1|2297608_2301184_-	glycosyltransferase	NA	A0A1D8EQD0	Escherichia_phage	29.5	2.7e-13
WP_043682734.1|2301263_2301932_-	class I SAM-dependent methyltransferase	NA	A0A1E1EVB8	Acanthamoeba_castellanii_mimivirus	35.4	1.2e-12
WP_043682737.1|2302061_2303180_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_043682740.1|2303176_2304454_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_043682743.1|2304471_2304930_+	adenylyltransferase/cytidyltransferase family protein	NA	A0A1V0SGE7	Hokovirus	46.7	5.3e-23
WP_158386277.1|2304958_2305249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173424572.1|2305327_2306125_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	46.0	1.8e-58
WP_084330434.1|2306121_2307441_-|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	30.6	2.0e-30
WP_052355778.1|2307563_2308460_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_043682747.1|2308464_2309490_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_158386279.1|2309546_2310569_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_052355779.1|2310661_2311528_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_052355780.1|2311579_2313067_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	30.8	6.1e-12
WP_043682752.1|2313097_2313883_-	cephalosporin hydroxylase family protein	NA	NA	NA	NA	NA
WP_043682755.1|2313905_2314721_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_043682756.1|2314717_2315206_-	acyltransferase	NA	NA	NA	NA	NA
WP_043682757.1|2315202_2316426_-	class I SAM-dependent methyltransferase	NA	A0A1V0SJ68	Klosneuvirus	28.5	8.9e-25
WP_043682758.1|2316422_2316989_-	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	H9NC63	Sphingomonas_phage	32.1	3.7e-10
WP_043686816.1|2316985_2318077_-	CDP-glucose 4,6-dehydratase	NA	J7Q7J8	Aeropyrum_coil-shaped_virus	23.8	2.9e-11
WP_043682760.1|2318076_2318850_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_043682762.1|2319076_2321023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043682764.1|2321075_2321609_+	adenylyl-sulfate kinase	NA	A0A2P1ELS9	Moumouvirus	31.4	4.1e-11
WP_043682765.1|2321605_2322952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043682769.1|2322944_2325344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_084330637.1|2325366_2325939_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
WP_043682772.1|2325935_2326652_+|holin	phosphocholine cytidylyltransferase family protein	holin	NA	NA	NA	NA
WP_043682776.1|2326962_2327970_+	DUF4351 domain-containing protein	NA	NA	NA	NA	NA
WP_043682779.1|2328156_2329701_+	TIGR02677 family protein	NA	NA	NA	NA	NA
WP_084330844.1|2329700_2330948_+	TIGR02678 family protein	NA	NA	NA	NA	NA
WP_043682784.1|2330944_2335072_+	TIGR02680 family protein	NA	NA	NA	NA	NA
WP_043686822.1|2335115_2336420_+	TIGR02679 family protein	NA	NA	NA	NA	NA
WP_084330639.1|2336598_2337552_+	TIGR00730 family Rossman fold protein	NA	A0A1D8KU27	Synechococcus_phage	32.5	2.1e-13
WP_043686824.1|2337864_2338113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043682791.1|2338335_2339583_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_043686826.1|2339604_2340531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043682794.1|2340626_2341751_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	25.6	5.3e-16
WP_084330640.1|2341944_2342256_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_043682800.1|2342371_2343487_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_043682801.1|2343492_2344623_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_043682802.1|2344619_2346413_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.7	1.5e-17
WP_148304944.1|2346409_2346814_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_043682805.1|2346731_2347118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158386281.1|2347146_2347659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043686831.1|2347756_2349070_-|transposase	IS1380 family transposase	transposase	NA	NA	NA	NA
WP_043681547.1|2350701_2351784_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_HG916765	Castellaniella defragrans 65Phen	3952818	2948191	2985842	3952818	protease,transposase	Acidithiobacillus_phage(75.0%)	28	NA	NA
WP_043685705.1|2948191_2949505_+|transposase	IS1380 family transposase	transposase	NA	NA	NA	NA
WP_052355854.1|2949789_2950572_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_052355855.1|2951137_2951902_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_043683795.1|2952683_2953697_+	virulence RhuM family protein	NA	NA	NA	NA	NA
WP_043683798.1|2953739_2954033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052355856.1|2954090_2954774_+	conjugal transfer protein TrbM	NA	NA	NA	NA	NA
WP_043683800.1|2954785_2955421_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_084330689.1|2955845_2956241_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA	NA
WP_052355857.1|2956237_2958667_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA	NA
WP_043683802.1|2958660_2958996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043680420.1|2959113_2960427_+|transposase	IS1380 family transposase	transposase	NA	NA	NA	NA
WP_043683804.1|2961034_2961409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148304855.1|2962171_2963686_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	54.9	1.7e-81
WP_158386299.1|2964921_2965068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043683810.1|2965584_2966484_+	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_052355858.1|2966588_2967311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043683812.1|2967300_2967864_+	DUF1788 domain-containing protein	NA	NA	NA	NA	NA
WP_043683814.1|2967882_2971344_+	BREX system P-loop protein BrxC	NA	NA	NA	NA	NA
WP_084330691.1|2971531_2972461_+	Abi family protein	NA	NA	NA	NA	NA
WP_043687261.1|2972460_2975814_+	restriction endonuclease subunit M	NA	NA	NA	NA	NA
WP_043683816.1|2975820_2977149_+	AAA family ATPase	NA	C7BGE8	Burkholderia_phage	26.0	5.1e-10
WP_148304966.1|2977145_2977517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148304855.1|2977616_2979131_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	54.9	1.7e-81
WP_043683818.1|2979141_2979537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043683820.1|2979539_2981870_+	BREX-1 system phosphatase PglZ type B	NA	NA	NA	NA	NA
WP_043683822.1|2981872_2983918_+|protease	protease Lon-related BREX system protein BrxL	protease	NA	NA	NA	NA
WP_043683824.1|2983914_2984151_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_148304855.1|2984327_2985842_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	54.9	1.7e-81
>prophage 7
NZ_HG916765	Castellaniella defragrans 65Phen	3952818	3023635	3029850	3952818	transposase	Leptospira_phage(33.33%)	8	NA	NA
WP_084330434.1|3023635_3024955_+|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	30.6	2.0e-30
WP_173424572.1|3024951_3025749_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	46.0	1.8e-58
WP_158386269.1|3026058_3026199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_084330784.1|3026195_3026555_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	40.9	8.9e-18
WP_084330628.1|3026576_3028310_+|transposase	IS66 family transposase	transposase	S5VLC8	Leptospira_phage	37.8	4.9e-45
WP_043687275.1|3028327_3028573_-	type II toxin-antitoxin system ParD family antitoxin	NA	A0A0N7C055	Escherichia_phage	54.3	8.8e-17
WP_043683884.1|3028822_3029335_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_043683885.1|3029640_3029850_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	57.1	2.5e-12
