assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000600105.1_ASM60010v1	NZ_CP006837	Lysinibacillus varians strain GY32 chromosome, complete genome	1	43036-43274	1	PILER-CR	no	csa3	csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,casR	Type I-A	AGCAAAGCGTCAGGCCCAAACAAGTCATTTACGTAAATAGAAGAAAAGCTATG	53	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,casR	NA,NA	NA|188aa|up_9|NZ_CP006837.1_30128_30692_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|427aa|up_8|NZ_CP006837.1_31037_32318_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|1171aa|up_7|NZ_CP006837.1_32543_36056_-	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins	NA|172aa|up_6|NZ_CP006837.1_36251_36767_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	csa3|112aa|up_5|NZ_CP006837.1_36905_37241_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|317aa|up_4|NZ_CP006837.1_37272_38223_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|111aa|up_3|NZ_CP006837.1_38299_38632_+	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|69aa|up_2|NZ_CP006837.1_38689_38896_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|803aa|up_1|NZ_CP006837.1_38977_41386_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|213aa|up_0|NZ_CP006837.1_41755_42394_+	cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)	NA|177aa|down_0|NZ_CP006837.1_43461_43992_+	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|303aa|down_1|NZ_CP006837.1_44152_45061_+	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|207aa|down_2|NZ_CP006837.1_45254_45875_+	cd16841, RraA_family, ribonuclease activity regulator RraA family	NA|425aa|down_3|NZ_CP006837.1_45923_47198_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|293aa|down_4|NZ_CP006837.1_47290_48169_-	pfam08664, YcbB, YcbB domain	NA|421aa|down_5|NZ_CP006837.1_48169_49432_-	smart00387, HATPase_c, Histidine kinase-like ATPases	NA|596aa|down_6|NZ_CP006837.1_50265_52053_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|105aa|down_7|NZ_CP006837.1_52073_52388_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|199aa|down_8|NZ_CP006837.1_52399_52996_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|72aa|down_9|NZ_CP006837.1_53009_53225_+	pfam10704, DUF2508, Protein of unknown function (DUF2508)
GCF_000600105.1_ASM60010v1	NZ_CP006837	Lysinibacillus varians strain GY32 chromosome, complete genome	2	353579-353680	1	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,casR	Orphan	AAATTGTTTGAGTGACTGGCACT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,casR	NA|301aa|up_8|NZ_CP006837.1_347404_348307_-,NA|56aa|up_4|NZ_CP006837.1_350583_350751_+,NA|147aa|up_0|NZ_CP006837.1_353136_353577_+,NA|48aa|down_9|NZ_CP006837.1_367758_367902_+	NA|223aa|up_9|NZ_CP006837.1_346613_347282_+	cd14845, L-Ala-D-Glu_peptidase_like, L-Ala-D-Glu peptidase, also known as L-alanyl-D-glutamate endopeptidase	NA|301aa|up_8|NZ_CP006837.1_347404_348307_-	NA	NA|174aa|up_7|NZ_CP006837.1_348325_348847_-	pfam09851, SHOCT, Short C-terminal domain	NA|71aa|up_6|NZ_CP006837.1_348945_349158_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|296aa|up_5|NZ_CP006837.1_349559_350447_+	pfam13730, HTH_36, Helix-turn-helix domain	NA|56aa|up_4|NZ_CP006837.1_350583_350751_+	NA	NA|113aa|up_3|NZ_CP006837.1_351329_351668_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|169aa|up_2|NZ_CP006837.1_351720_352227_-	pfam13490, zf-HC2, Putative zinc-finger	NA|214aa|up_1|NZ_CP006837.1_352322_352964_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|147aa|up_0|NZ_CP006837.1_353136_353577_+	NA	NA|1008aa|down_0|NZ_CP006837.1_353684_356708_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|322aa|down_1|NZ_CP006837.1_357063_358029_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|376aa|down_2|NZ_CP006837.1_358081_359209_-	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]	NA|264aa|down_3|NZ_CP006837.1_359755_360547_+	COG3584, COG3584, Uncharacterized protein conserved in bacteria [Function unknown]	NA|186aa|down_4|NZ_CP006837.1_361642_362200_+	cd00305, Cu-Zn_Superoxide_Dismutase, Copper/zinc superoxide dismutase (SOD)	NA|189aa|down_5|NZ_CP006837.1_362777_363344_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|332aa|down_6|NZ_CP006837.1_363770_364766_+	cd13567, PBP2_TtGluBP, Substrate binding domain of Thermus thermophilus GluBP (TtGluBP) of TAXI family of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|172aa|down_7|NZ_CP006837.1_364973_365489_+	pfam08905, DUF1850, Domain of unknown function (DUF1850)	NA|679aa|down_8|NZ_CP006837.1_365485_367522_+	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein	NA|48aa|down_9|NZ_CP006837.1_367758_367902_+	NA
GCF_000600105.1_ASM60010v1	NZ_CP006837	Lysinibacillus varians strain GY32 chromosome, complete genome	3	875566-875660	2	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,casR	Orphan	AGTGCCAGTCACTCAAACAATTT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,casR	NA,NA	NA|181aa|up_9|NZ_CP006837.1_861114_861657_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|181aa|up_8|NZ_CP006837.1_862061_862604_+	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides	NA|151aa|up_7|NZ_CP006837.1_862843_863296_+	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain	NA|221aa|up_6|NZ_CP006837.1_863476_864139_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|841aa|up_5|NZ_CP006837.1_864249_866772_+	COG2898, COG2898, Uncharacterized conserved protein [Function unknown]	NA|166aa|up_4|NZ_CP006837.1_867075_867573_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|1030aa|up_3|NZ_CP006837.1_867783_870873_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|278aa|up_2|NZ_CP006837.1_870972_871806_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|556aa|up_1|NZ_CP006837.1_872473_874141_-	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|70aa|up_0|NZ_CP006837.1_874146_874356_-	PRK13667, PRK13667, hypothetical protein; Provisional	NA|253aa|down_0|NZ_CP006837.1_875674_876433_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|251aa|down_1|NZ_CP006837.1_876580_877333_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|542aa|down_2|NZ_CP006837.1_877325_878951_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|328aa|down_3|NZ_CP006837.1_878953_879937_+	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|367aa|down_4|NZ_CP006837.1_879951_881052_+	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional	NA|263aa|down_5|NZ_CP006837.1_881041_881830_+	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional	NA|186aa|down_6|NZ_CP006837.1_882092_882650_-	PRK00150, def, peptide deformylase; Reviewed	NA|372aa|down_7|NZ_CP006837.1_883045_884161_+	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|326aa|down_8|NZ_CP006837.1_884164_885142_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|448aa|down_9|NZ_CP006837.1_885189_886533_+	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
GCF_000600105.1_ASM60010v1	NZ_CP006837	Lysinibacillus varians strain GY32 chromosome, complete genome	4	1779389-1779485	3	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,casR	Orphan	ATGAATCGTCCAATTTAAAAATCGC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,casR	NA|163aa|up_0|NZ_CP006837.1_1778589_1779078_-,NA|75aa|down_7|NZ_CP006837.1_1788694_1788919_+,NA|47aa|down_8|NZ_CP006837.1_1788935_1789076_+	NA|275aa|up_9|NZ_CP006837.1_1768408_1769233_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|401aa|up_8|NZ_CP006837.1_1769902_1771105_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|218aa|up_7|NZ_CP006837.1_1771165_1771819_-	pfam04893, Yip1, Yip1 domain	NA|229aa|up_6|NZ_CP006837.1_1771990_1772677_-	cd01415, SAICAR_synt_PurC, bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase	NA|458aa|up_5|NZ_CP006837.1_1772920_1774294_-	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase	NA|158aa|up_4|NZ_CP006837.1_1774481_1774955_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|441aa|up_3|NZ_CP006837.1_1774944_1776267_+	PRK02991, PRK02991, D-serine dehydratase; Provisional	NA|234aa|up_2|NZ_CP006837.1_1776419_1777121_+	pfam09234, DUF1963, Domain of unknown function (DUF1963)	NA|391aa|up_1|NZ_CP006837.1_1777209_1778382_-	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|163aa|up_0|NZ_CP006837.1_1778589_1779078_-	NA	NA|402aa|down_0|NZ_CP006837.1_1779527_1780733_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|416aa|down_1|NZ_CP006837.1_1780792_1782040_-	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]	NA|163aa|down_2|NZ_CP006837.1_1782257_1782746_+	PRK11648, PRK11648, metal-dependent hydrolase	NA|263aa|down_3|NZ_CP006837.1_1782842_1783631_-	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|245aa|down_4|NZ_CP006837.1_1783930_1784665_+	pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase	NA|279aa|down_5|NZ_CP006837.1_1785107_1785944_+	PRK13317, PRK13317, pantothenate kinase; Provisional	NA|827aa|down_6|NZ_CP006837.1_1786005_1788486_-	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|75aa|down_7|NZ_CP006837.1_1788694_1788919_+	NA	NA|47aa|down_8|NZ_CP006837.1_1788935_1789076_+	NA	NA|109aa|down_9|NZ_CP006837.1_1789240_1789567_+	pfam13028, DUF3889, Protein of unknown function (DUF3889)
