The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_022904	Pandoraea pnomenusa 3kgm, complete sequence	5429298	359389	394857	5429298	integrase,transposase	environmental_Halophage(25.0%)	23	387671:387730	402468:403384
WP_023594086.1|359389_361393_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_144347198.1|362872_363214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023594088.1|363925_364111_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_144347200.1|364103_365363_+	DNA primase	NA	H9YTV9	environmental_Halophage	31.5	2.1e-29
WP_023594089.1|365731_365941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023594090.1|366012_367938_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_023594091.1|367934_369257_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_023594092.1|369253_370162_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_023594093.1|370194_373410_+	type I restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_080738680.1|373454_374579_+	site-specific DNA-methyltransferase	NA	NA	NA	NA	NA
WP_031627060.1|374597_378833_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_144347202.1|378765_380568_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_144347204.1|380672_381101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023594097.1|381542_383180_-|integrase	site-specific integrase	integrase	A0A1L7DQ84	Ralstonia_phage	33.3	7.4e-27
WP_023594098.1|383471_384569_+|integrase	site-specific integrase	integrase	A0A0A1I5U0	Burkholderia_phage	38.4	1.5e-60
WP_004541200.1|384781_386302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023594099.1|386824_387679_-	hypothetical protein	NA	NA	NA	NA	NA
387671:387730	attL	AGAGACCATTTCAAAAAGACCCCGAGGGGGCTGTTAACCTTTTCGGCAAGCTGTTAACCT	NA	NA	NA	NA
WP_023594100.1|388636_389290_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_023594101.1|389816_390395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023594103.1|391131_392580_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_023594104.1|392618_393212_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023872380.1|393347_393590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144347206.1|393731_394857_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.5	3.1e-56
402468:403384	attR	AGAGACCATTTCAAAAAGACCCCGAGGGGGCTGTTAACCTTTTCGGCAAGCTGTTAACCTTGGCCATCTGAACAACAGGAACCAAGGAGATGGGCACGCCGATCATTGATGACGAACTGTGGGCATTGATCGAACCTTTGCTGCCGCCGCCAAAGCCGCGACGCAAGAAATATCCAGGCCGCCGCCCTGTTTCGGACCGGGCGGCACTGAACGGCATCCTGTTCGTGTTCAAGACCGGGATACGCTGGTGCGACCTGTCGATCAAGTTGGGATTTGGTTCGGGCCCGACCTGCTGGCGTCGCCTGCGCGACTGGCAAAAGGCCGGCGTGTGGGACCGGCTGCACGAGCTGCTGCTCGCGAAGTTACGCGAGGCCGGCCAGCTCGATTTCTCACGCGCAGCCGTCGATTCATCGTCGGTGCGAGCCGTTGGGGCGGGCGAAAAACTGGCCCGAACCCCACGGATCGCTCGCGACCCGGTTCCAAGCACCACATCCTCGTCGACGCAAACGGCGTCCCCGTCACCGCGATCCTGACTGGCGCGAACCGCAACGATGTCACCCAGTTGCTGCCGCTTGTCGATGCGATTGCGCCGATTCGCGGTGTACGTGGCCGACCGCTTCAGAAGCCCAAAGTCATTTACGCCGATCGCGGCTACGACTCCGAACCACACCGCCGGAAACTTCGCGAACGTGGCATCAAGCCGGTGATCGCAAAGCGCCGGACCGAGCACGGTAGTGGTCTCGGTAAATTTCGCTGGGTGGTCGAGCGTACTCACGCATGGCTCCACAACTTTCGTCGTCTTCGCATTCGCTTTGAGCGTCGCGCCGACATTCACGAAGCATTCCTCAAACTCGGTTGCTCCCTCGTCTGCTGGAACATCTTCAGACGTACGGCGCAGTCTTTTTGAAACGGTCTCT	NA	NA	NA	NA
>prophage 2
NC_022904	Pandoraea pnomenusa 3kgm, complete sequence	5429298	1647004	1665017	5429298	transposase	Leptospira_phage(40.0%)	15	NA	NA
WP_115344488.1|1647004_1648191_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	38.4	7.2e-48
WP_052167260.1|1648259_1652708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023595201.1|1652707_1652992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023595202.1|1653250_1654501_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	41.7	1.5e-40
WP_144347285.1|1654762_1655883_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	45.3	3.0e-59
WP_023595205.1|1655930_1656164_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_023595206.1|1656291_1657998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144347287.1|1657981_1658323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023595207.1|1658726_1658894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023595208.1|1658929_1659217_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_023593909.1|1659220_1660759_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	36.8	2.2e-44
WP_144347290.1|1661237_1661567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023595209.1|1661720_1662476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031627158.1|1662526_1663645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144347294.1|1663909_1665017_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.8	8.3e-46
>prophage 3
NC_022904	Pandoraea pnomenusa 3kgm, complete sequence	5429298	2073149	2101096	5429298	holin,head,capsid,portal,tail,protease,terminase	Burkholderia_phage(50.0%)	35	NA	NA
WP_023595576.1|2073149_2073593_+	hypothetical protein	NA	Q3HQZ3	Burkholderia_phage	49.0	7.4e-30
WP_023595578.1|2073785_2074049_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023595579.1|2074045_2074846_+	helix-turn-helix domain-containing protein	NA	Q3HQZ6	Burkholderia_phage	60.1	3.8e-85
WP_023595580.1|2074842_2075499_+	hypothetical protein	NA	Q3HQZ7	Burkholderia_phage	61.3	2.3e-72
WP_023595582.1|2075695_2076196_+	hypothetical protein	NA	H2BDI1	Pseudomonas_virus	34.6	6.8e-16
WP_052167371.1|2076350_2076689_+	DUF1064 domain-containing protein	NA	A0A0U2C0S3	Paracoccus_phage	47.7	1.0e-15
WP_023595584.1|2076685_2077036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031627197.1|2077298_2077709_+	DUF1364 family protein	NA	Q6JIF7	Burkholderia_virus	39.3	3.9e-17
WP_023595587.1|2078074_2078689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023595588.1|2078899_2079289_+	hypothetical protein	NA	Q3HR06	Burkholderia_phage	68.8	5.4e-45
WP_023595589.1|2079510_2080023_+|terminase	terminase	terminase	Q3HQS6	Burkholderia_phage	62.2	2.2e-38
WP_023595590.1|2080025_2081741_+|terminase	terminase large subunit	terminase	Q3HQS7	Burkholderia_phage	80.4	2.9e-271
WP_031627198.1|2081748_2083059_+|portal	phage portal protein	portal	Q3HQS8	Burkholderia_phage	76.6	2.5e-190
WP_023595592.1|2083036_2083879_+|protease	Clp protease ClpP	protease	Q3HQS9	Burkholderia_phage	80.7	1.6e-121
WP_023595593.1|2083881_2085162_+|capsid	phage major capsid protein	capsid	Q3HQT0	Burkholderia_phage	75.3	3.4e-184
WP_023595594.1|2085231_2085504_+	hypothetical protein	NA	Q3HQT1	Burkholderia_phage	61.4	5.4e-07
WP_023595595.1|2085507_2085849_+|head,tail	phage gp6-like head-tail connector protein	head,tail	Q3HQT2	Burkholderia_phage	71.7	4.3e-38
WP_023595596.1|2085848_2086196_+|head	phage head closure protein	head	Q6JIM4	Burkholderia_virus	41.3	3.1e-07
WP_023595597.1|2086188_2086542_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_023595598.1|2086546_2086972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023595599.1|2086981_2087356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023595600.1|2087370_2087709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023595601.1|2087701_2088136_+	hypothetical protein	NA	G3ENA5	Psychrobacter_phage	33.1	3.9e-07
WP_023595602.1|2088128_2090945_+|tail	phage tail tape measure protein	tail	Q3HQT9	Burkholderia_phage	37.9	7.3e-30
WP_023595603.1|2090941_2091301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023595604.1|2091300_2091777_+	DUF1833 family protein	NA	I7GYA2	Xanthomonas_virus	31.6	2.8e-11
WP_023595605.1|2091776_2092163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052167266.1|2092153_2095834_+	hypothetical protein	NA	A5H1M5	Xanthomonas_virus	29.4	9.0e-81
WP_023595607.1|2095892_2096897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023595608.1|2096899_2097307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158443196.1|2097406_2099428_+	acyltransferase family protein	NA	A0A1R3Y5Q6	Salmonella_virus	37.7	3.0e-78
WP_023595610.1|2099531_2099873_+	hypothetical protein	NA	Q6J1Q7	Burkholderia_virus	69.1	2.5e-33
WP_080738845.1|2099872_2100151_+|holin	holin	holin	Q6J1Q6	Burkholderia_virus	57.6	4.2e-23
WP_023595612.1|2100137_2100614_+	glycoside hydrolase family 104 protein	NA	Q9MC90	Pseudomonas_phage	63.1	8.1e-51
WP_080738723.1|2100610_2101096_+	DUF2514 family protein	NA	Q6J1Q4	Burkholderia_virus	47.8	3.2e-26
>prophage 4
NC_022904	Pandoraea pnomenusa 3kgm, complete sequence	5429298	3045482	3069167	5429298	holin,capsid,terminase	Burkholderia_phage(43.48%)	31	NA	NA
WP_023596421.1|3045482_3045866_-	DUF1353 domain-containing protein	NA	A0A1L2CVI8	Pectobacterium_phage	45.0	1.6e-17
WP_023596422.1|3045862_3046291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144347351.1|3046320_3046533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023596424.1|3046612_3046810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031627291.1|3046806_3047319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023596426.1|3047323_3047620_-|holin	holin	holin	C7BGD7	Burkholderia_phage	52.8	4.6e-20
WP_023596427.1|3047634_3048147_-	glycoside hydrolase family 104 protein	NA	A0A0F7LBS0	Escherichia_phage	67.1	2.2e-54
WP_023596428.1|3048195_3048702_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_023596429.1|3048712_3049798_-	hypothetical protein	NA	A0A0M3ULD8	Salmonella_phage	31.6	3.4e-20
WP_023596430.1|3049855_3050518_-	DUF2612 domain-containing protein	NA	A9YX13	Burkholderia_phage	69.1	9.8e-87
WP_023596431.1|3050519_3051701_-	hypothetical protein	NA	A9YX12	Burkholderia_phage	70.0	1.1e-144
WP_023874031.1|3051697_3052045_-	hypothetical protein	NA	A9YX11	Burkholderia_phage	69.2	2.9e-37
WP_023596433.1|3052047_3052794_-	hypothetical protein	NA	A9YX06	Burkholderia_phage	78.6	1.0e-103
WP_023596434.1|3052806_3053214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023596436.1|3054190_3054505_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	41.4	2.1e-15
WP_023596437.1|3054506_3055088_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	36.3	1.1e-22
WP_031627292.1|3055084_3056887_-	hypothetical protein	NA	A0A0M4REK7	Salmonella_phage	39.2	3.0e-45
WP_023596438.1|3057067_3057577_-	hypothetical protein	NA	A0A0N7IRF3	Acinetobacter_phage	34.8	8.5e-14
WP_023596439.1|3057576_3058017_-	DUF3277 family protein	NA	A0A0M5M1K6	Salmonella_phage	49.3	4.1e-33
WP_023596440.1|3058029_3059505_-	DUF3383 domain-containing protein	NA	A0A0P0I492	Acinetobacter_phage	46.8	1.7e-107
WP_023596441.1|3059570_3060254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023596442.1|3060246_3060813_-	hypothetical protein	NA	A9YX29	Burkholderia_phage	55.2	1.5e-51
WP_023596443.1|3060816_3061188_-	hypothetical protein	NA	A9YX28	Burkholderia_phage	76.4	5.0e-48
WP_023596444.1|3061190_3061778_-	hypothetical protein	NA	A9YX26	Burkholderia_phage	43.4	1.4e-28
WP_023596445.1|3061810_3062194_-	DUF4054 domain-containing protein	NA	A9YX25	Burkholderia_phage	67.5	6.1e-41
WP_023596446.1|3062233_3062584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023596447.1|3062595_3063633_-	DUF2184 domain-containing protein	NA	A0A0N7IRF2	Acinetobacter_phage	66.4	1.1e-124
WP_023596448.1|3063644_3064139_-	hypothetical protein	NA	A0A0P0I8F3	Acinetobacter_phage	51.2	1.4e-32
WP_031627293.1|3064154_3065441_-	DUF2213 domain-containing protein	NA	A0A0P0IRE1	Acinetobacter_phage	42.5	1.6e-64
WP_162473457.1|3065450_3066203_-|capsid	minor capsid protein	capsid	A9YWZ8	Burkholderia_phage	64.0	1.8e-81
WP_023596452.1|3067619_3069167_-|terminase	phage terminase large subunit	terminase	H9C0C7	Vibrio_phage	45.9	3.2e-112
>prophage 5
NC_022904	Pandoraea pnomenusa 3kgm, complete sequence	5429298	3526555	3531954	5429298	integrase	Burkholderia_virus(50.0%)	8	3516748:3516763	3539922:3539937
3516748:3516763	attL	ACCATGGCGAGCAACA	NA	NA	NA	NA
WP_031627339.1|3526555_3526852_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A4JWV2	Burkholderia_virus	62.2	2.7e-28
WP_023596882.1|3526855_3527170_+	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	73.1	2.6e-29
WP_023596883.1|3527179_3527971_-	DNA adenine methylase	NA	Q8W6S4	Burkholderia_virus	77.9	6.0e-123
WP_144347376.1|3528297_3528684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144347484.1|3528668_3529076_-	glycoside hydrolase family protein	NA	A0A0U4JP67	Pseudomonas_phage	54.5	3.6e-31
WP_144347378.1|3529136_3529322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031627340.1|3529535_3529853_+|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	49.5	2.5e-16
WP_023596888.1|3530040_3531954_-	selenocysteine-specific translation elongation factor	NA	A0A2K9KZ60	Tupanvirus	27.9	4.6e-20
3539922:3539937	attR	TGTTGCTCGCCATGGT	NA	NA	NA	NA
