The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_022568	Listeria monocytogenes EGD, complete genome	2907193	117462	123987	2907193	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003721739.1|117462_117915_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|117920_118256_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003732219.1|118472_118901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732220.1|118912_119329_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	1.3e-20
WP_014600375.1|119606_119996_+	DUF5072 family protein	NA	NA	NA	NA	NA
WP_003721744.1|120008_120521_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|120568_120871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009911444.1|120912_121317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014600377.1|121303_123172_+	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_003721748.1|123168_123987_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	4.2e-39
>prophage 2
NC_022568	Listeria monocytogenes EGD, complete genome	2907193	1105889	1113312	2907193		Hokovirus(33.33%)	8	NA	NA
WP_003721506.1|1105889_1106273_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
WP_014600722.1|1106294_1107278_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	35.3	3.1e-12
WP_014930875.1|1107292_1108306_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	6.0e-11
WP_003721509.1|1108514_1110005_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
WP_003727000.1|1110016_1110841_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	9.7e-68
WP_014600724.1|1110853_1111162_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003732712.1|1111222_1111627_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_014600725.1|1111755_1113312_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
>prophage 3
NC_022568	Listeria monocytogenes EGD, complete genome	2907193	1200009	1303817	2907193	capsid,tRNA,portal,integrase,tail,terminase,holin,protease	Listeria_phage(79.45%)	120	1207284:1207300	1246542:1246558
WP_003736387.1|1200009_1201062_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	34.9	1.3e-29
WP_014600775.1|1201061_1203470_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_014600776.1|1203630_1204332_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.4	3.0e-33
1207284:1207300	attL	TAGTAAAGCAATTTTAA	NA	NA	NA	NA
WP_003721623.1|1207852_1208305_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014600778.1|1208320_1211521_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_003732773.1|1211627_1212302_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	47.7	7.5e-50
WP_072215733.1|1212339_1213266_-	ribonuclease HIII	NA	NA	NA	NA	NA
WP_022741830.1|1213419_1213683_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_012951513.1|1213682_1214225_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003723851.1|1214317_1216030_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.8	5.1e-18
WP_010989713.1|1216052_1218410_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	50.4	1.0e-21
WP_003723853.1|1218490_1218802_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	39.6	5.4e-19
WP_014600780.1|1218877_1220689_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003732778.1|1220878_1222093_+	aspartate kinase	NA	NA	NA	NA	NA
WP_003733801.1|1222148_1222643_-	YslB family protein	NA	NA	NA	NA	NA
WP_003723856.1|1222790_1223591_+	glutamate racemase	NA	NA	NA	NA	NA
WP_003732780.1|1223603_1224350_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_014600781.1|1224353_1224965_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_014600782.1|1225001_1225529_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_014930882.1|1225853_1226987_-|integrase	tyrosine-type recombinase/integrase	integrase	A8ATC7	Listeria_phage	50.3	1.3e-94
WP_014930883.1|1227113_1227728_-	hypothetical protein	NA	A0A059T7Z1	Listeria_phage	86.3	1.4e-87
WP_014930884.1|1228139_1228613_-	helix-turn-helix transcriptional regulator	NA	R4IDX0	Listeria_phage	45.3	3.1e-18
WP_014930885.1|1228878_1229070_+	helix-turn-helix transcriptional regulator	NA	A0A059T5F8	Listeria_phage	92.1	6.4e-23
WP_014930886.1|1229105_1229348_+	hypothetical protein	NA	A8ATD2	Listeria_phage	65.0	1.1e-24
WP_009929542.1|1229780_1229933_+	hypothetical protein	NA	A8ATD4	Listeria_phage	100.0	1.5e-19
WP_014930888.1|1230066_1230243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930889.1|1230239_1230515_+	hypothetical protein	NA	A0A059T7V3	Listeria_phage	86.3	4.3e-36
WP_025283125.1|1230968_1231172_+	hypothetical protein	NA	A8ASN5	Listeria_phage	92.6	2.7e-19
WP_014930891.1|1231229_1231793_+	DUF1642 domain-containing protein	NA	Q8W5X2	Listeria_phage	46.3	1.8e-36
WP_010991168.1|1231789_1231936_+	hypothetical protein	NA	A8ATZ0	Listeria_phage	97.9	2.3e-20
WP_014930892.1|1231951_1232131_+	hypothetical protein	NA	A0A059T5G0	Listeria_phage	86.4	1.3e-22
WP_014930893.1|1232127_1232421_+	hypothetical protein	NA	A8ATM4	Listeria_phage	76.3	3.4e-31
WP_014930894.1|1232438_1232960_+	hypothetical protein	NA	A8ASP1	Listeria_phage	54.1	3.1e-35
WP_014930895.1|1232959_1233229_+	hypothetical protein	NA	A0A059T7S7	Listeria_phage	92.9	7.3e-41
WP_014930896.1|1233225_1233849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025283093.1|1233845_1234052_+	hypothetical protein	NA	A0A059T6C7	Listeria_phage	94.1	3.4e-30
WP_014930897.1|1234048_1234300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930898.1|1234403_1234787_+	hypothetical protein	NA	A8ATZ3	Listeria_phage	93.7	2.5e-58
WP_014930899.1|1234807_1235035_+	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	84.0	4.6e-28
WP_014930900.1|1235046_1235355_+	hypothetical protein	NA	A0A059T801	Listeria_phage	95.1	8.4e-49
WP_014930901.1|1235417_1235921_+	hypothetical protein	NA	A0A059T8B2	Listeria_phage	27.3	9.3e-05
WP_022741834.1|1235943_1236498_+	hypothetical protein	NA	A8ATS5	Listeria_phage	65.2	4.2e-59
WP_014930903.1|1236497_1237070_+	DUF3310 domain-containing protein	NA	A0A059T5J6	Listeria_phage	73.7	2.0e-75
WP_014930904.1|1237066_1237240_+	hypothetical protein	NA	A0A059T5G3	Listeria_phage	96.5	4.4e-23
WP_014930905.1|1237236_1237620_+	hypothetical protein	NA	A8ATE8	Listeria_phage	80.3	1.0e-51
WP_003743933.1|1237621_1238101_+	siphovirus Gp157 family protein	NA	Q8W5W1	Listeria_phage	100.0	5.4e-79
WP_003743935.1|1238113_1238803_+	AAA family ATPase	NA	A0A059T7T3	Listeria_phage	100.0	2.6e-130
WP_014930906.1|1238866_1240123_+	DEAD/DEAH box helicase	NA	Q8W5V9	Listeria_phage	97.6	4.9e-236
WP_011702027.1|1240147_1240633_+	DUF669 domain-containing protein	NA	Q8W5V8	Listeria_phage	99.4	1.4e-87
WP_011702028.1|1240655_1242998_+	DNA primase	NA	A0A059T6A4	Listeria_phage	43.2	1.3e-146
WP_014930907.1|1243292_1243613_+	VRR-NUC domain-containing protein	NA	Q8W5V6	Listeria_phage	97.1	9.9e-53
WP_014930908.1|1243634_1244165_+	DUF3310 domain-containing protein	NA	A0A059T7T5	Listeria_phage	88.1	2.1e-87
WP_014930909.1|1244165_1244591_+	DUF722 domain-containing protein	NA	Q8W5V4	Listeria_phage	92.9	1.0e-68
WP_009928009.1|1245118_1245433_+	HNH endonuclease	NA	A8ATF8	Listeria_phage	99.0	3.8e-57
WP_014929542.1|1245481_1245838_+|terminase	P27 family phage terminase small subunit	terminase	A0A059T7Y1	Listeria_phage	97.0	4.5e-46
WP_014930910.1|1245834_1247478_+|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	98.4	0.0e+00
1246542:1246558	attR	TAGTAAAGCAATTTTAA	NA	NA	NA	NA
WP_009928006.1|1247487_1247877_-	DUF2513 domain-containing protein	NA	A0A1Q1PVT8	Staphylococcus_phage	39.8	4.8e-17
WP_014930911.1|1247927_1249058_+|portal	phage portal protein	portal	A0A059T6F0	Listeria_phage	95.2	1.7e-208
WP_014930912.1|1249054_1249852_+|protease	Clp protease ClpP	protease	A0A059T5F2	Listeria_phage	98.5	1.2e-142
WP_014930913.1|1249878_1251030_+|capsid	phage major capsid protein	capsid	A0A059T678	Listeria_phage	100.0	6.3e-214
WP_012951548.1|1251036_1251207_+	hypothetical protein	NA	A0A059T7Y2	Listeria_phage	100.0	6.3e-22
WP_014930914.1|1251216_1251516_+	hypothetical protein	NA	A0A059T7R0	Listeria_phage	100.0	5.3e-48
WP_014930915.1|1251499_1251865_+	hypothetical protein	NA	A0A059T6F2	Listeria_phage	98.3	9.3e-63
WP_014930916.1|1251861_1252263_+	hypothetical protein	NA	A8ATA2	Listeria_phage	94.7	1.1e-64
WP_014930917.1|1252259_1252643_+	hypothetical protein	NA	A0A059T681	Listeria_phage	96.1	1.0e-64
WP_009929558.1|1252663_1253251_+|tail	phage tail protein	tail	A0A059T7Y4	Listeria_phage	99.0	9.9e-107
WP_014930918.1|1253321_1253654_+	hypothetical protein	NA	A0A059T7R2	Listeria_phage	97.3	5.1e-52
WP_014930919.1|1253704_1253854_+	hypothetical protein	NA	A0A059T6F4	Listeria_phage	100.0	2.3e-20
WP_014930920.1|1253869_1258789_+|tail	phage tail tape measure protein	tail	A0A059T5F4	Listeria_phage	94.8	0.0e+00
WP_014930921.1|1258785_1260435_+|tail	phage tail family protein	tail	A0A059T682	Listeria_phage	98.9	0.0e+00
WP_014930922.1|1260450_1262745_+|tail	phage tail protein	tail	A0A059T7Y6	Listeria_phage	98.7	0.0e+00
WP_014930923.1|1262734_1263829_+	hypothetical protein	NA	A0A059T7R4	Listeria_phage	94.5	5.6e-196
WP_009928178.1|1263877_1264321_+	hypothetical protein	NA	A0A059T6F6	Listeria_phage	100.0	6.8e-76
WP_009928179.1|1264299_1264716_+	hypothetical protein	NA	A0A059T5F5	Listeria_phage	99.3	9.3e-43
WP_014930924.1|1264736_1265000_+|holin	phage holin	holin	A0A059T684	Listeria_phage	93.0	9.7e-38
WP_014930925.1|1264996_1265230_+	hypothetical protein	NA	R4IBI3	Listeria_phage	84.4	4.6e-31
WP_038406231.1|1266096_1266300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930928.1|1266461_1267034_-	hypothetical protein	NA	A0A059T7R6	Listeria_phage	93.7	9.0e-97
WP_014930929.1|1267101_1267551_-	helix-turn-helix domain-containing protein	NA	Q9T196	Listeria_phage	91.3	2.1e-69
WP_014930930.1|1267555_1267906_-	AcrIIA2 family anti-CRISPR protein	NA	Q9T195	Listeria_phage	93.1	4.9e-53
WP_014930931.1|1267937_1268315_-	anti-CRISPR protein AcrIIA3	NA	A0A059T686	Listeria_phage	97.6	9.3e-66
WP_014930932.1|1268817_1269051_+	hypothetical protein	NA	A8ATX0	Listeria_phage	94.8	2.3e-35
WP_014600783.1|1269757_1271020_+	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
WP_009924171.1|1271061_1271655_-	YdeI/OmpD-associated family protein	NA	NA	NA	NA	NA
WP_009914084.1|1271808_1272216_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
WP_014600785.1|1272380_1272980_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.5	1.7e-29
WP_003723543.1|1273011_1273272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014600786.1|1273395_1274808_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.8	8.3e-51
WP_003723545.1|1274832_1275096_+	DUF3116 family protein	NA	NA	NA	NA	NA
WP_003723546.1|1275264_1275741_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_003723547.1|1275779_1276025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723548.1|1276021_1277227_-	MFS transporter	NA	NA	NA	NA	NA
WP_003723549.1|1277431_1278091_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723550.1|1278132_1278327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723551.1|1278393_1279242_-	YitT family protein	NA	NA	NA	NA	NA
WP_003723553.1|1279573_1279711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009931701.1|1279861_1280575_+	trehalose operon repressor	NA	NA	NA	NA	NA
WP_014600787.1|1280605_1282252_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_003723556.1|1282270_1283755_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_003723557.1|1283870_1284323_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_012951571.1|1284369_1284834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723559.1|1285022_1285943_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003723560.1|1285962_1287210_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	51.8	1.2e-106
WP_003723561.1|1287193_1288024_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	4.3e-47
WP_014600789.1|1288159_1289299_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1289379_1289775_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1289925_1290141_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010989719.1|1290259_1290793_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003732795.1|1290810_1291476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014600790.1|1291737_1292676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1292790_1294074_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1294258_1295518_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_009924620.1|1295636_1296203_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_009924619.1|1296237_1296807_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003723889.1|1296908_1297451_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003723890.1|1297460_1298324_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003723891.1|1298320_1299106_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
WP_003723892.1|1299239_1300100_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_014600791.1|1300371_1302450_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	4.1e-107
WP_009924616.1|1302512_1303817_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
>prophage 4
NC_022568	Listeria monocytogenes EGD, complete genome	2907193	1838268	1846554	2907193		Prochlorococcus_phage(33.33%)	8	NA	NA
WP_014600928.1|1838268_1838835_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	39.1	1.3e-26
WP_014600929.1|1838831_1839881_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	8.3e-64
WP_003722245.1|1839899_1841327_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_014600930.1|1841311_1843531_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.2	1.0e-159
WP_003733240.1|1843523_1844207_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1844210_1844456_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_003733239.1|1844467_1845181_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.7	2.7e-42
WP_014600931.1|1845261_1846554_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.6	5.5e-17
>prophage 5
NC_022568	Listeria monocytogenes EGD, complete genome	2907193	2505435	2513279	2907193		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722604.1|2505435_2506407_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003722605.1|2506414_2507383_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
WP_010990001.1|2507384_2508260_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	3.2e-08
WP_014601136.1|2508367_2510098_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.3	4.3e-174
WP_003734087.1|2510139_2511201_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_014601137.1|2511217_2512201_-	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	37.2	1.6e-48
WP_003722610.1|2512319_2513279_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
>prophage 6
NC_022568	Listeria monocytogenes EGD, complete genome	2907193	2800341	2810373	2907193		Tupanvirus(33.33%)	6	NA	NA
WP_014601215.1|2800341_2802495_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	34.1	6.7e-44
WP_014601216.1|2802518_2804291_-	DNA helicase RecQ	NA	A0A2K9L3P7	Tupanvirus	37.1	1.1e-79
WP_003722118.1|2804451_2805918_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.0	8.0e-97
WP_003722119.1|2806203_2806734_-	ADP-ribose-binding protein	NA	A0A0K1L687	Scale_drop_disease_virus	49.3	2.6e-29
WP_014931037.1|2806791_2808402_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.9	7.5e-48
WP_003725314.1|2808918_2810373_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	30.3	1.9e-50
