assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	1	331911-332709	1	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|86aa|up_9|NZ_CP002885.1_321030_321288_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|398aa|up_8|NZ_CP002885.1_321604_322798_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_7|NZ_CP002885.1_322833_324516_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_6|NZ_CP002885.1_324532_326728_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_5|NZ_CP002885.1_326841_327975_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_4|NZ_CP002885.1_327971_328592_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_3|NZ_CP002885.1_328688_329270_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_2|NZ_CP002885.1_329199_329925_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_1|NZ_CP002885.1_330014_330935_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_0|NZ_CP002885.1_330974_331403_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|903aa|down_0|NZ_CP002885.1_334774_337483_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP002885.1_337773_339384_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP002885.1_339407_340316_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|614aa|down_3|NZ_CP002885.1_340593_342435_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP002885.1_342431_344048_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP002885.1_344044_348037_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP002885.1_348033_348342_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP002885.1_348344_349886_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP002885.1_349934_350228_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP002885.1_350257_350548_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	2	364873-365571	1	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	365161-365202|365236-365268	NZ_CP002885.1_373177-373218|NZ_CP002885.1_371992-372024	NA	10	10	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP002885.1_361885_362188_+,NA|161aa|down_1|NZ_CP002885.1_374966_375449_-,NA|410aa|down_5|NZ_CP002885.1_377565_378795_+	NA|262aa|up_9|NZ_CP002885.1_356580_357366_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP002885.1_357354_358158_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP002885.1_358167_359565_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP002885.1_359743_361519_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP002885.1_361661_361889_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP002885.1_361885_362188_+	NA	NA|74aa|up_3|NZ_CP002885.1_362235_362457_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP002885.1_362453_362879_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP002885.1_363014_363647_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP002885.1_363643_364552_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP002885.1_374307_374979_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP002885.1_374966_375449_-	NA	NA|239aa|down_2|NZ_CP002885.1_375506_376223_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP002885.1_376324_376981_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP002885.1_377050_377542_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP002885.1_377565_378795_+	NA	NA|621aa|down_6|NZ_CP002885.1_378949_380812_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP002885.1_380883_381270_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_8|NZ_CP002885.1_381272_381908_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP002885.1_381995_382880_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	3	690295-690371	2	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP002885.1_675977_676193_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP002885.1_676189_676597_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP002885.1_676656_677343_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP002885.1_677496_680130_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP002885.1_680152_682540_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP002885.1_682677_683400_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP002885.1_683396_684194_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP002885.1_684195_685083_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP002885.1_685088_686303_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP002885.1_687328_688774_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP002885.1_691506_693057_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP002885.1_693108_693501_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP002885.1_693497_693755_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP002885.1_693937_695173_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP002885.1_695423_695837_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP002885.1_695833_696070_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP002885.1_696173_696680_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|177aa|down_7|NZ_CP002885.1_696793_697324_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP002885.1_697307_698069_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP002885.1_698125_698437_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	4	1572045-1573117	3	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1572245-1572266	NZ_CP002885.1_1210657-1210636	NA	15	15	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP002885.1_1563808_1564126_+,NA	NA|103aa|up_9|NZ_CP002885.1_1561323_1561632_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP002885.1_1561628_1563248_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP002885.1_1563808_1564126_+	NA	NA|209aa|up_6|NZ_CP002885.1_1564260_1564887_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP002885.1_1564952_1565285_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP002885.1_1565300_1566557_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP002885.1_1566684_1567896_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP002885.1_1567968_1569447_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP002885.1_1569443_1570829_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP002885.1_1570906_1571941_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP002885.1_1573971_1574373_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP002885.1_1574369_1574627_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP002885.1_1574709_1575669_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP002885.1_1575693_1576656_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|246aa|down_4|NZ_CP002885.1_1576654_1577392_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP002885.1_1577472_1579440_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP002885.1_1579457_1580282_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP002885.1_1580450_1580933_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP002885.1_1581004_1581829_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP002885.1_1582025_1582964_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	5	1618583-1618747	1	PILER-CR	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCACCCGCGCCGCCGTTGCCGCCGTCGCCGCCA	33	0	0	NA	NA	NA	2	2	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|46aa|up_7|NZ_CP002885.1_1612115_1612253_+,NA|76aa|up_2|NZ_CP002885.1_1616245_1616473_-,NA|38aa|down_2|NZ_CP002885.1_1622986_1623100_-,NA|137aa|down_3|NZ_CP002885.1_1623149_1623560_-	NA|474aa|up_9|NZ_CP002885.1_1609708_1611130_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_8|NZ_CP002885.1_1611293_1612109_+	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|46aa|up_7|NZ_CP002885.1_1612115_1612253_+	NA	NA|210aa|up_6|NZ_CP002885.1_1612201_1612831_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|340aa|up_5|NZ_CP002885.1_1613187_1614207_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|413aa|up_4|NZ_CP002885.1_1614209_1615448_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|262aa|up_3|NZ_CP002885.1_1615444_1616230_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|76aa|up_2|NZ_CP002885.1_1616245_1616473_-	NA	NA|142aa|up_1|NZ_CP002885.1_1616841_1617267_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|78aa|up_0|NZ_CP002885.1_1617717_1617951_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|767aa|down_0|NZ_CP002885.1_1619653_1621954_+	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|155aa|down_1|NZ_CP002885.1_1622069_1622534_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|down_2|NZ_CP002885.1_1622986_1623100_-	NA	NA|137aa|down_3|NZ_CP002885.1_1623149_1623560_-	NA	NA|248aa|down_4|NZ_CP002885.1_1623576_1624320_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|305aa|down_5|NZ_CP002885.1_1624316_1625231_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|down_6|NZ_CP002885.1_1625283_1626828_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|down_7|NZ_CP002885.1_1626824_1627946_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|down_8|NZ_CP002885.1_1627962_1630065_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1401aa|down_9|NZ_CP002885.1_1630503_1634706_-	pfam00934, PE, PE family
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	6	2072024-2072278	2	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2072105-2072122|2072105-2072122|2072195-2072212	NZ_CP002885.1_399473-399456|NZ_CP002885.1_605628-605611|NZ_CP002885.1_3439239-3439222	NA	5	5	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP002885.1_2071383_2071647_-,NA	NA|165aa|up_9|NZ_CP002885.1_2057733_2058228_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|211aa|up_8|NZ_CP002885.1_2058620_2059253_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP002885.1_2059611_2062437_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP002885.1_2062663_2063524_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP002885.1_2063564_2064431_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP002885.1_2064435_2066322_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP002885.1_2066337_2068371_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP002885.1_2068490_2070716_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP002885.1_2070991_2071387_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP002885.1_2071383_2071647_-	NA	NA|346aa|down_0|NZ_CP002885.1_2073415_2074453_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP002885.1_2074452_2075820_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NZ_CP002885.1_2075993_2077433_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP002885.1_2077465_2078917_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP002885.1_2078946_2079897_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP002885.1_2079911_2080328_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP002885.1_2080605_2081028_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_7|NZ_CP002885.1_2081076_2081379_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP002885.1_2081375_2081690_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP002885.1_2081689_2083423_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	7	2154886-2155105	4	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP002885.1_2143706_2144114_-,NA|127aa|down_5|NZ_CP002885.1_2162621_2163002_-	NA|155aa|up_9|NZ_CP002885.1_2137034_2137499_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP002885.1_2137674_2139897_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP002885.1_2139934_2140378_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP002885.1_2140491_2141085_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP002885.1_2141167_2141773_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP002885.1_2141872_2142877_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP002885.1_2142976_2143729_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP002885.1_2143706_2144114_-	NA	NA|767aa|up_1|NZ_CP002885.1_2144248_2146549_+	PLN02892, PLN02892, isocitrate lyase	NA|421aa|up_0|NZ_CP002885.1_2150462_2151724_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|155aa|down_0|NZ_CP002885.1_2157132_2157597_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP002885.1_2157694_2158558_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP002885.1_2158595_2159867_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP002885.1_2160138_2161254_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP002885.1_2161244_2162585_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP002885.1_2162621_2163002_-	NA	NA|621aa|down_6|NZ_CP002885.1_2163158_2165021_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP002885.1_2165028_2165508_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP002885.1_2165744_2166518_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP002885.1_2166521_2167289_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	8	3110856-3112003	2,5,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,csm3gr7,csm2gr11,cas10,cas6	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-B,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	14,14,15	15	TypeIII-A,TypeIII-C,TypeIII-B,TypeIII-D	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_7|NZ_CP002885.1_3104135_3104390_-,NA|135aa|up_6|NZ_CP002885.1_3104537_3104942_+,NA|64aa|up_5|NZ_CP002885.1_3104938_3105130_+,NA|86aa|up_4|NZ_CP002885.1_3106716_3106974_+,NA|104aa|up_3|NZ_CP002885.1_3107078_3107390_+,NA|203aa|up_2|NZ_CP002885.1_3107809_3108418_+,NA	NA|348aa|up_9|NZ_CP002885.1_3102450_3103494_-	COG5586, COG5586, Uncharacterized conserved protein [Function unknown]	NA|92aa|up_8|NZ_CP002885.1_3103684_3103960_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_7|NZ_CP002885.1_3104135_3104390_-	NA	NA|135aa|up_6|NZ_CP002885.1_3104537_3104942_+	NA	NA|64aa|up_5|NZ_CP002885.1_3104938_3105130_+	NA	NA|86aa|up_4|NZ_CP002885.1_3106716_3106974_+	NA	NA|104aa|up_3|NZ_CP002885.1_3107078_3107390_+	NA	NA|203aa|up_2|NZ_CP002885.1_3107809_3108418_+	NA	NA|470aa|up_1|NZ_CP002885.1_3108488_3109898_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP002885.1_3109894_3110707_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP002885.1_3112034_3113296_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	csm3gr7|237aa|down_1|NZ_CP002885.1_3113659_3114370_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_2|NZ_CP002885.1_3114379_3114754_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_3|NZ_CP002885.1_3114750_3117189_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|263aa|down_4|NZ_CP002885.1_3117185_3117974_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_5|NZ_CP002885.1_3118307_3118853_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_6|NZ_CP002885.1_3119124_3120009_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|296aa|down_7|NZ_CP002885.1_3120011_3120899_-	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain	NA|182aa|down_8|NZ_CP002885.1_3121203_3121749_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|90aa|down_9|NZ_CP002885.1_3121745_3122015_-	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	9	3656548-3656666	6	CRISPRCasFinder	no	cas3	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Unclear	GCCCCTGTGAGTCGAGTGAGCGGAACGAAC	30	1	1	3656578-3656636	NZ_CP002885.1_3656641-3656699	NA	1	1	Unclear	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|104aa|down_6|NZ_CP002885.1_3662299_3662611_-,NA|126aa|down_7|NZ_CP002885.1_3662747_3663125_-	NA|719aa|up_9|NZ_CP002885.1_3643374_3645531_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|223aa|up_8|NZ_CP002885.1_3645527_3646196_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|395aa|up_7|NZ_CP002885.1_3646296_3647481_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|757aa|up_6|NZ_CP002885.1_3647509_3649780_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|390aa|up_5|NZ_CP002885.1_3649768_3650938_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|175aa|up_4|NZ_CP002885.1_3650962_3651487_-	PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase	NA|430aa|up_3|NZ_CP002885.1_3651483_3652773_-	TIGR01161, N5-carboxyaminoimidazole_ribonucleotide_synthase, phosphoribosylaminoimidazole carboxylase, PurK protein	NA|224aa|up_2|NZ_CP002885.1_3652873_3653545_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|173aa|up_1|NZ_CP002885.1_3653499_3654018_-	pfam03703, bPH_2, Bacterial PH domain	NA|267aa|up_0|NZ_CP002885.1_3654060_3654861_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|223aa|down_0|NZ_CP002885.1_3656932_3657601_+	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|298aa|down_1|NZ_CP002885.1_3657641_3658535_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|144aa|down_2|NZ_CP002885.1_3658531_3658963_+	COG2166, sufE, Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]	NA|601aa|down_3|NZ_CP002885.1_3659070_3660873_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|262aa|down_4|NZ_CP002885.1_3660882_3661668_-	PRK07122, PRK07122, RNA polymerase sigma factor SigF; Reviewed	NA|146aa|down_5|NZ_CP002885.1_3661664_3662102_-	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	NA|104aa|down_6|NZ_CP002885.1_3662299_3662611_-	NA	NA|126aa|down_7|NZ_CP002885.1_3662747_3663125_-	NA	NA|450aa|down_8|NZ_CP002885.1_3663158_3664508_-	PRK08297, PRK08297, L-lysine aminotransferase; Provisional	NA|151aa|down_9|NZ_CP002885.1_3664558_3665011_-	smart00344, HTH_ASNC, helix_turn_helix ASNC type
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	10	3739020-3739597	4	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGTTGCCNCCGNNGCCGCCG	25	0	0	NA	NA	NA	7	7	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP002885.1_3753829_3754117_-	NA|282aa|up_9|NZ_CP002885.1_3716512_3717358_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP002885.1_3717832_3718273_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP002885.1_3718306_3719176_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP002885.1_3719196_3720207_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|215aa|up_5|NZ_CP002885.1_3720479_3721124_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP002885.1_3721190_3722420_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP002885.1_3722702_3724052_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP002885.1_3724063_3725203_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP002885.1_3725199_3725931_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|3114aa|up_0|NZ_CP002885.1_3725939_3735281_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP002885.1_3741699_3741957_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP002885.1_3742212_3751686_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP002885.1_3752311_3752758_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP002885.1_3752794_3753535_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP002885.1_3753829_3754117_-	NA	NA|130aa|down_5|NZ_CP002885.1_3767611_3768001_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_6|NZ_CP002885.1_3768014_3768308_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_7|NZ_CP002885.1_3768304_3769150_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_8|NZ_CP002885.1_3769273_3769549_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_9|NZ_CP002885.1_3769545_3769803_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	11	3760984-3761110	3	PILER-CR	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTTGCCGATGCCGGTGTTGAAA	22	0	0	NA	NA	NA	2	2	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|96aa|up_0|NZ_CP002885.1_3753829_3754117_-,NA	NA|410aa|up_9|NZ_CP002885.1_3721190_3722420_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_8|NZ_CP002885.1_3722702_3724052_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_7|NZ_CP002885.1_3724063_3725203_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_6|NZ_CP002885.1_3725199_3725931_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|3114aa|up_5|NZ_CP002885.1_3725939_3735281_-	pfam00823, PPE, PPE family	NA|86aa|up_4|NZ_CP002885.1_3741699_3741957_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|up_3|NZ_CP002885.1_3742212_3751686_-	pfam00823, PPE, PPE family	NA|149aa|up_2|NZ_CP002885.1_3752311_3752758_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|up_1|NZ_CP002885.1_3752794_3753535_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|up_0|NZ_CP002885.1_3753829_3754117_-	NA	NA|130aa|down_0|NZ_CP002885.1_3767611_3768001_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_1|NZ_CP002885.1_3768014_3768308_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_2|NZ_CP002885.1_3768304_3769150_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_3|NZ_CP002885.1_3769273_3769549_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_4|NZ_CP002885.1_3769545_3769803_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_5|NZ_CP002885.1_3769844_3771035_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|123aa|down_6|NZ_CP002885.1_3771151_3771520_+	pfam00498, FHA, FHA domain	NA|184aa|down_7|NZ_CP002885.1_3771516_3772068_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|194aa|down_8|NZ_CP002885.1_3772074_3772656_-	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|123aa|down_9|NZ_CP002885.1_3772636_3773005_-	pfam05331, DUF742, Protein of unknown function (DUF742)
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	12	3848474-3848563	7	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|77aa|up_6|NZ_CP002885.1_3840510_3840741_+,NA|121aa|up_5|NZ_CP002885.1_3840844_3841207_-,NA|121aa|down_0|NZ_CP002885.1_3849548_3849911_-,NA|52aa|down_2|NZ_CP002885.1_3851753_3851909_-,NA|52aa|down_3|NZ_CP002885.1_3851933_3852089_-,NA|238aa|down_6|NZ_CP002885.1_3856124_3856838_-	NA|212aa|up_9|NZ_CP002885.1_3838189_3838825_-	COG1214, COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|169aa|up_8|NZ_CP002885.1_3838821_3839328_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|387aa|up_7|NZ_CP002885.1_3839324_3840485_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_6|NZ_CP002885.1_3840510_3840741_+	NA	NA|121aa|up_5|NZ_CP002885.1_3840844_3841207_-	NA	NA|177aa|up_4|NZ_CP002885.1_3842165_3842696_+	pfam00823, PPE, PPE family	NA|252aa|up_3|NZ_CP002885.1_3843013_3843769_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|421aa|up_2|NZ_CP002885.1_3843852_3845114_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|100aa|up_1|NZ_CP002885.1_3847252_3847552_+	pfam00934, PE, PE family	NA|181aa|up_0|NZ_CP002885.1_3847637_3848180_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|121aa|down_0|NZ_CP002885.1_3849548_3849911_-	NA	NA|179aa|down_1|NZ_CP002885.1_3850073_3850610_+	pfam00823, PPE, PPE family	NA|52aa|down_2|NZ_CP002885.1_3851753_3851909_-	NA	NA|52aa|down_3|NZ_CP002885.1_3851933_3852089_-	NA	NA|461aa|down_4|NZ_CP002885.1_3853281_3854664_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_5|NZ_CP002885.1_3854701_3856123_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|238aa|down_6|NZ_CP002885.1_3856124_3856838_-	NA	NA|285aa|down_7|NZ_CP002885.1_3856848_3857703_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_8|NZ_CP002885.1_3857924_3859799_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_9|NZ_CP002885.1_3859820_3860297_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	13	3950386-3952389	5	CRT	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGNNCCGGCGGNNCCGGCGG	24	14	63	3950410-3950460|3950410-3950460|3950410-3950460|3950485-3950514|3950485-3950514|3950485-3950514|3950485-3950514|3950485-3950514|3950485-3950514|3950857-3950901|3950857-3950901|3950857-3950901|3950857-3950901|3950857-3950901|3950926-3950964|3950926-3950964|3950926-3950964|3950926-3950964|3950989-3951054|3950989-3951054|3950989-3951054|3950989-3951054|3951079-3951120|3951079-3951120|3951079-3951120|3951079-3951120|3951145-3951219|3951145-3951219|3951145-3951219|3951145-3951219|3951244-3951279|3951244-3951279|3951244-3951279|3951244-3951279|3951304-3951342|3951304-3951342|3951304-3951342|3951304-3951342|3951304-3951342|3951367-3951429|3951367-3951429|3951367-3951429|3951367-3951429|3951454-3951474|3951454-3951474|3951454-3951474|3951454-3951474|3951454-3951474|3951454-3951474|3951454-3951474|3951499-3951564|3951499-3951564|3951499-3951564|3951499-3951564|3951589-3951630|3951589-3951630|3951589-3951630|3951589-3951630|3951655-3951693|3951655-3951693|3951655-3951693|3951655-3951693|3951655-3951693	NZ_CP002885.1_3948886-3948936|NZ_CP002885.1_3949549-3949599|NZ_CP002885.1_3949900-3949950|NZ_CP002885.1_3934502-3934531|NZ_CP002885.1_3948961-3948990|NZ_CP002885.1_3949273-3949302|NZ_CP002885.1_3949624-3949653|NZ_CP002885.1_3949975-3950004|NZ_CP002885.1_3950134-3950163|NZ_CP002885.1_3949042-3949086|NZ_CP002885.1_3949327-3949371|NZ_CP002885.1_3949678-3949722|NZ_CP002885.1_3950188-3950232|NZ_CP002885.1_3934556-3934600|NZ_CP002885.1_3949111-3949149|NZ_CP002885.1_3949396-3949434|NZ_CP002885.1_3949747-3949785|NZ_CP002885.1_3950257-3950295|NZ_CP002885.1_3949174-3949239|NZ_CP002885.1_3949459-3949524|NZ_CP002885.1_3949810-3949875|NZ_CP002885.1_3950320-3950385|NZ_CP002885.1_3948886-3948927|NZ_CP002885.1_3949549-3949590|NZ_CP002885.1_3949900-3949941|NZ_CP002885.1_3950059-3950100|NZ_CP002885.1_3949264-3949338|NZ_CP002885.1_3949615-3949689|NZ_CP002885.1_3949966-3950040|NZ_CP002885.1_3950125-3950199|NZ_CP002885.1_3948892-3948927|NZ_CP002885.1_3949555-3949590|NZ_CP002885.1_3949906-3949941|NZ_CP002885.1_3950065-3950100|NZ_CP002885.1_3948952-3948990|NZ_CP002885.1_3949264-3949302|NZ_CP002885.1_3949615-3949653|NZ_CP002885.1_3949966-3950004|NZ_CP002885.1_3950125-3950163|NZ_CP002885.1_3949042-3949104|NZ_CP002885.1_3949327-3949389|NZ_CP002885.1_3949678-3949740|NZ_CP002885.1_3950188-3950250|NZ_CP002885.1_3934643-3934663|NZ_CP002885.1_3949129-3949149|NZ_CP002885.1_3949414-3949434|NZ_CP002885.1_3949765-3949785|NZ_CP002885.1_3950275-3950295|NZ_CP002885.1_971757-971737|NZ_CP002885.1_3948934-3948954|NZ_CP002885.1_3949174-3949239|NZ_CP002885.1_3949459-3949524|NZ_CP002885.1_3949810-3949875|NZ_CP002885.1_3950320-3950385|NZ_CP002885.1_3948886-3948927|NZ_CP002885.1_3949549-3949590|NZ_CP002885.1_3949900-3949941|NZ_CP002885.1_3950059-3950100|NZ_CP002885.1_3948952-3948990|NZ_CP002885.1_3949264-3949302|NZ_CP002885.1_3949615-3949653|NZ_CP002885.1_3949966-3950004|NZ_CP002885.1_3950125-3950163	NA	26	26	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP002885.1_3955611_3956451_+	NA|255aa|up_9|NZ_CP002885.1_3921704_3922469_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_8|NZ_CP002885.1_3922694_3923648_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_7|NZ_CP002885.1_3923672_3923864_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_6|NZ_CP002885.1_3924078_3925281_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_5|NZ_CP002885.1_3925305_3926427_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_4|NZ_CP002885.1_3926497_3928006_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1384aa|up_3|NZ_CP002885.1_3928176_3932328_+	pfam00934, PE, PE family	NA|1621aa|up_2|NZ_CP002885.1_3932618_3937481_+	pfam00934, PE, PE family	NA|516aa|up_1|NZ_CP002885.1_3937647_3939195_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_0|NZ_CP002885.1_3939191_3940028_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|549aa|down_0|NZ_CP002885.1_3953004_3954651_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP002885.1_3954724_3955516_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP002885.1_3955611_3956451_+	NA	NA|399aa|down_3|NZ_CP002885.1_3956505_3957702_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP002885.1_3957730_3958441_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|344aa|down_5|NZ_CP002885.1_3958505_3959537_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|335aa|down_6|NZ_CP002885.1_3959608_3960613_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP002885.1_3960628_3961693_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP002885.1_3961709_3962894_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP002885.1_3962935_3963967_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_000572195.1_ASM57219v1	NZ_CP002885	Mycobacterium tuberculosis CCDC5180 chromosome, complete genome	14	4113094-4113182	8	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NZ_CP002885.1_4103680_4104451_-,NA|233aa|up_0|NZ_CP002885.1_4112198_4112897_-,NA|126aa|down_6|NZ_CP002885.1_4118417_4118795_+	NA|388aa|up_9|NZ_CP002885.1_4099351_4100515_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NZ_CP002885.1_4100511_4101564_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NZ_CP002885.1_4102062_4102926_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_CP002885.1_4103680_4104451_-	NA	NA|549aa|up_5|NZ_CP002885.1_4104447_4106094_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_CP002885.1_4106090_4106954_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_CP002885.1_4106946_4107873_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_CP002885.1_4107874_4109500_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_CP002885.1_4110207_4112163_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP002885.1_4112198_4112897_-	NA	NA|173aa|down_0|NZ_CP002885.1_4113242_4113761_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP002885.1_4113761_4114745_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP002885.1_4114737_4115931_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP002885.1_4115936_4116758_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|216aa|down_4|NZ_CP002885.1_4116889_4117537_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP002885.1_4117572_4118310_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP002885.1_4118417_4118795_+	NA	NA|225aa|down_7|NZ_CP002885.1_4118893_4119568_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP002885.1_4119673_4120468_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP002885.1_4120474_4120930_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
