assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000569015.1_ASM56901v1	NZ_CP006713	Bifidobacterium breve JCM 7019, complete genome	1	133048-133384	1	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TACTGGTGGTTTTGCCCCGCTGAGG	25	0	0	NA	NA	NA	6	6	Orphan	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|262aa|down_3|NZ_CP006713.1_138400_139186_-	NA|314aa|up_9|NZ_CP006713.1_118250_119192_+	PRK03072, PRK03072, heat shock protein HtpX; Provisional	NA|312aa|up_8|NZ_CP006713.1_119457_120393_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|356aa|up_7|NZ_CP006713.1_120455_121523_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_6|NZ_CP006713.1_121676_122963_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_5|NZ_CP006713.1_122986_124570_+	cd01031, EriC, ClC chloride channel EriC	NA|348aa|up_4|NZ_CP006713.1_124757_125801_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|356aa|up_3|NZ_CP006713.1_125128_126196_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|509aa|up_2|NZ_CP006713.1_128332_129859_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NZ_CP006713.1_130063_131698_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|351aa|up_0|NZ_CP006713.1_131767_132820_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NZ_CP006713.1_133805_135173_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP006713.1_135562_136615_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|351aa|down_2|NZ_CP006713.1_137042_138095_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|262aa|down_3|NZ_CP006713.1_138400_139186_-	NA	NA|343aa|down_4|NZ_CP006713.1_139182_140211_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|605aa|down_5|NZ_CP006713.1_140417_142232_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_6|NZ_CP006713.1_142503_143535_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|1470aa|down_7|NZ_CP006713.1_144409_148819_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|613aa|down_8|NZ_CP006713.1_148923_150762_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|320aa|down_9|NZ_CP006713.1_151015_151975_+	cd05827, Sortase_C, Sortase domain found in class C sortases
GCF_000569015.1_ASM56901v1	NZ_CP006713	Bifidobacterium breve JCM 7019, complete genome	2	1232175-1232324	2	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TTGCAGGTATAAAGGGCCGATTTG	24	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|395aa|down_0|NZ_CP006713.1_1232405_1233590_-	NA|804aa|up_9|NZ_CP006713.1_1220031_1222443_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|327aa|up_8|NZ_CP006713.1_1222678_1223659_+	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|322aa|up_7|NZ_CP006713.1_1223658_1224624_+	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|up_6|NZ_CP006713.1_1224780_1225731_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|402aa|up_5|NZ_CP006713.1_1225889_1227095_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|268aa|up_4|NZ_CP006713.1_1227243_1228047_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|83aa|up_3|NZ_CP006713.1_1228110_1228359_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|317aa|up_2|NZ_CP006713.1_1228451_1229402_+	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases	NA|284aa|up_1|NZ_CP006713.1_1229398_1230250_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|508aa|up_0|NZ_CP006713.1_1230380_1231904_+	PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional	NA|395aa|down_0|NZ_CP006713.1_1232405_1233590_-	NA	NA|446aa|down_1|NZ_CP006713.1_1233762_1235100_-	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|368aa|down_2|NZ_CP006713.1_1235226_1236330_-	PRK03343, PRK03343, transaldolase; Validated	NA|703aa|down_3|NZ_CP006713.1_1236404_1238513_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|365aa|down_4|NZ_CP006713.1_1238773_1239868_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|382aa|down_5|NZ_CP006713.1_1239922_1241068_+	PRK14278, PRK14278, chaperone protein DnaJ; Provisional	NA|264aa|down_6|NZ_CP006713.1_1241209_1242001_-	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_7|NZ_CP006713.1_1242151_1243036_+	PRK12554, PRK12554, undecaprenyl pyrophosphate phosphatase; Reviewed	NA|288aa|down_8|NZ_CP006713.1_1243186_1244050_-	pfam09754, PAC2, PAC2 family	NA|678aa|down_9|NZ_CP006713.1_1244843_1246877_+	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed
GCF_000569015.1_ASM56901v1	NZ_CP006713	Bifidobacterium breve JCM 7019, complete genome	3	1719409-1721539	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-U, Type I-U?,Type I-C	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	31,31,30	31	TypeI-U,TypeI-U?,TypeI-C	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|78aa|up_5|NZ_CP006713.1_1712151_1712385_-,NA|78aa|down_0|NZ_CP006713.1_1722364_1722598_-	NA|525aa|up_9|NZ_CP006713.1_1706700_1708275_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_8|NZ_CP006713.1_1708329_1709025_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_7|NZ_CP006713.1_1709045_1709798_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_6|NZ_CP006713.1_1709845_1712155_+	PRK14873, PRK14873, primosomal protein N'	NA|78aa|up_5|NZ_CP006713.1_1712151_1712385_-	NA	NA|235aa|up_4|NZ_CP006713.1_1712400_1713105_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP006713.1_1713243_1714257_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP006713.1_1714553_1716416_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP006713.1_1716582_1716867_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP006713.1_1717152_1718373_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|78aa|down_0|NZ_CP006713.1_1722364_1722598_-	NA	cas2|97aa|down_1|NZ_CP006713.1_1723059_1723350_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NZ_CP006713.1_1723406_1724438_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_3|NZ_CP006713.1_1724439_1725129_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|311aa|down_4|NZ_CP006713.1_1725254_1726187_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|589aa|down_5|NZ_CP006713.1_1726179_1727946_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|219aa|down_6|NZ_CP006713.1_1727942_1728599_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|843aa|down_7|NZ_CP006713.1_1728883_1731412_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|1103aa|down_8|NZ_CP006713.1_1731444_1734753_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|323aa|down_9|NZ_CP006713.1_1735425_1736394_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP
GCF_000569015.1_ASM56901v1	NZ_CP006713	Bifidobacterium breve JCM 7019, complete genome	4	2207961-2208045	4	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CCTTCCCGAATATGTACCACTGAC	24	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|640aa|up_7|NZ_CP006713.1_2194435_2196355_-,NA|57aa|down_2|NZ_CP006713.1_2212498_2212669_+,NA|47aa|down_4|NZ_CP006713.1_2214242_2214383_-	NA|184aa|up_9|NZ_CP006713.1_2193515_2194067_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|85aa|up_8|NZ_CP006713.1_2194145_2194400_+	cd17808, HipA_Ec_like, type II toxin-antitoxin sytem toxin HipA from Escherichia coli and similar proteins	NA|640aa|up_7|NZ_CP006713.1_2194435_2196355_-	NA	NA|473aa|up_6|NZ_CP006713.1_2196357_2197776_-	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain	NA|487aa|up_5|NZ_CP006713.1_2198187_2199648_+	pfam02687, FtsX, FtsX-like permease family	NA|247aa|up_4|NZ_CP006713.1_2200088_2200829_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|255aa|up_3|NZ_CP006713.1_2202301_2203066_+	TIGR00295, Uncharacterized_protein_MJ0778, TIGR00295 family protein	NA|287aa|up_2|NZ_CP006713.1_2203195_2204056_-	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|804aa|up_1|NZ_CP006713.1_2204339_2206751_-	pfam02705, K_trans, K+ potassium transporter	NA|320aa|up_0|NZ_CP006713.1_2206949_2207909_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|602aa|down_0|NZ_CP006713.1_2208163_2209969_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|621aa|down_1|NZ_CP006713.1_2210167_2212030_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|57aa|down_2|NZ_CP006713.1_2212498_2212669_+	NA	NA|439aa|down_3|NZ_CP006713.1_2212785_2214102_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|47aa|down_4|NZ_CP006713.1_2214242_2214383_-	NA	NA|83aa|down_5|NZ_CP006713.1_2214454_2214703_-	cd09004, GH43_bXyl-like, Glycosyl hydrolase family 43 protein such as Bacteroides thetaiotaomicron VPI-5482 alpha-L-arabinofuranosidases (BT3675;BT_3675) and (BT3662;BT_3662); includes mostly xylanases	NA|578aa|down_6|NZ_CP006713.1_2215122_2216856_-	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|713aa|down_7|NZ_CP006713.1_2216887_2219026_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|333aa|down_8|NZ_CP006713.1_2219043_2220042_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|307aa|down_9|NZ_CP006713.1_2220066_2220987_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
