assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000568975.1_ASM56897v1	NZ_CP006712	Bifidobacterium breve JCM 7017, complete genome	1	404614-404918	1	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CGTCCGCGTCGCCGTCGCTCCGA	23	0	0	NA	NA	NA	5	5	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|177aa|up_5|NZ_CP006712.1_392402_392933_+,NA|225aa|up_2|NZ_CP006712.1_399210_399885_+,NA|89aa|up_1|NZ_CP006712.1_401385_401652_+,NA	NA|222aa|up_9|NZ_CP006712.1_386892_387558_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|446aa|up_8|NZ_CP006712.1_387629_388967_-	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|179aa|up_7|NZ_CP006712.1_389235_389772_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|145aa|up_6|NZ_CP006712.1_390094_390529_+	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]	NA|177aa|up_5|NZ_CP006712.1_392402_392933_+	NA	NA|1243aa|up_4|NZ_CP006712.1_393619_397348_+	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|516aa|up_3|NZ_CP006712.1_397555_399103_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|225aa|up_2|NZ_CP006712.1_399210_399885_+	NA	NA|89aa|up_1|NZ_CP006712.1_401385_401652_+	NA	NA|90aa|up_0|NZ_CP006712.1_401781_402051_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|237aa|down_0|NZ_CP006712.1_405473_406184_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|301aa|down_1|NZ_CP006712.1_406318_407221_-	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|193aa|down_2|NZ_CP006712.1_407682_408261_+	pfam04011, LemA, LemA family	NA|752aa|down_3|NZ_CP006712.1_408326_410582_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|81aa|down_4|NZ_CP006712.1_410581_410824_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|288aa|down_5|NZ_CP006712.1_413027_413891_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|352aa|down_6|NZ_CP006712.1_414158_415214_+	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB)	NA|205aa|down_7|NZ_CP006712.1_415288_415903_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|78aa|down_8|NZ_CP006712.1_415925_416159_-	PRK02821, PRK02821, RNA-binding protein	NA|158aa|down_9|NZ_CP006712.1_416182_416656_-	PRK14520, rpsP, 30S ribosomal protein S16; Provisional
GCF_000568975.1_ASM56897v1	NZ_CP006712	Bifidobacterium breve JCM 7017, complete genome	2	1632791-1633368	2,1,1,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-C,Type I-U, Type I-U?	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGA,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,28,33,33,33	0	0	NA	NA	I-C:I-C:I-C:I-C:I-C	6,8,6,6,6	8	TypeI-C,TypeI-U,TypeI-U?	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_2|NZ_CP006712.1_1641840_1642074_-	NA|238aa|up_9|NZ_CP006712.1_1619406_1620120_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NZ_CP006712.1_1620179_1621754_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NZ_CP006712.1_1621807_1622503_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP006712.1_1622523_1623276_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NZ_CP006712.1_1623323_1625633_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP006712.1_1625782_1626487_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP006712.1_1626625_1627639_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP006712.1_1627935_1629798_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP006712.1_1629964_1630249_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP006712.1_1630534_1631755_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|486aa|down_0|NZ_CP006712.1_1633521_1634979_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|254aa|down_1|NZ_CP006712.1_1634975_1635737_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|78aa|down_2|NZ_CP006712.1_1641840_1642074_-	NA	cas2|97aa|down_3|NZ_CP006712.1_1642536_1642827_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_4|NZ_CP006712.1_1642883_1643915_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_5|NZ_CP006712.1_1643916_1644606_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_6|NZ_CP006712.1_1644644_1645496_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_7|NZ_CP006712.1_1645499_1647458_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_8|NZ_CP006712.1_1647460_1648165_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|823aa|down_9|NZ_CP006712.1_1648171_1650640_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
GCF_000568975.1_ASM56897v1	NZ_CP006712	Bifidobacterium breve JCM 7017, complete genome	3	1637581-1641016	2,3,4,4	CRT,PILER-CR,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-C,Type I-U, Type I-U?	ATTTCAATCCACCGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	34,33,33,33	0	0	NA	NA	NA:I-C:I-C:I-C	50,47,49,47	50	TypeI-C,TypeI-U,TypeI-U?	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_0|NZ_CP006712.1_1641840_1642074_-	NA|232aa|up_9|NZ_CP006712.1_1621807_1622503_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_8|NZ_CP006712.1_1622523_1623276_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_7|NZ_CP006712.1_1623323_1625633_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_6|NZ_CP006712.1_1625782_1626487_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_5|NZ_CP006712.1_1626625_1627639_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_4|NZ_CP006712.1_1627935_1629798_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_3|NZ_CP006712.1_1629964_1630249_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_2|NZ_CP006712.1_1630534_1631755_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|486aa|up_1|NZ_CP006712.1_1633521_1634979_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|254aa|up_0|NZ_CP006712.1_1634975_1635737_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|78aa|down_0|NZ_CP006712.1_1641840_1642074_-	NA	cas2|97aa|down_1|NZ_CP006712.1_1642536_1642827_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NZ_CP006712.1_1642883_1643915_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_3|NZ_CP006712.1_1643916_1644606_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_4|NZ_CP006712.1_1644644_1645496_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_5|NZ_CP006712.1_1645499_1647458_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_6|NZ_CP006712.1_1647460_1648165_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|823aa|down_7|NZ_CP006712.1_1648171_1650640_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|237aa|down_8|NZ_CP006712.1_1651103_1651814_-	pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase family ISL3	NA|1103aa|down_9|NZ_CP006712.1_1652232_1655541_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed
GCF_000568975.1_ASM56897v1	NZ_CP006712	Bifidobacterium breve JCM 7017, complete genome	4	2011034-2011180	5	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	2	2	2011059-2011094|2011120-2011155	NZ_CP006712.1_2012396-2012431|NZ_CP006712.1_2012457-2012492	NA	2	2	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|702aa|up_3|NZ_CP006712.1_2006224_2008330_+,NA|318aa|down_0|NZ_CP006712.1_2011294_2012248_+	NA|144aa|up_9|NZ_CP006712.1_1989729_1990161_+	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|3161aa|up_8|NZ_CP006712.1_1990975_2000458_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP006712.1_2000497_2002120_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|623aa|up_6|NZ_CP006712.1_2002112_2003981_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|236aa|up_5|NZ_CP006712.1_2004384_2005092_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP006712.1_2005093_2006053_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|702aa|up_3|NZ_CP006712.1_2006224_2008330_+	NA	NA|286aa|up_2|NZ_CP006712.1_2008408_2009266_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP006712.1_2009538_2010231_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP006712.1_2010246_2010678_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP006712.1_2011294_2012248_+	NA	NA|276aa|down_1|NZ_CP006712.1_2012664_2013492_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP006712.1_2013524_2013752_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP006712.1_2014081_2015287_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP006712.1_2015427_2016690_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP006712.1_2016785_2017919_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP006712.1_2018026_2019718_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP006712.1_2019784_2020036_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP006712.1_2020058_2020367_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1021aa|down_9|NZ_CP006712.1_2020553_2023616_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_000568975.1_ASM56897v1	NZ_CP006712	Bifidobacterium breve JCM 7017, complete genome	5	2177380-2177456	6	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|116aa|up_9|NZ_CP006712.1_2160791_2161139_+,NA	NA|116aa|up_9|NZ_CP006712.1_2160791_2161139_+	NA	NA|347aa|up_8|NZ_CP006712.1_2161258_2162299_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_7|NZ_CP006712.1_2162928_2164347_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_6|NZ_CP006712.1_2164451_2165393_+	pfam02424, ApbE, ApbE family	NA|610aa|up_5|NZ_CP006712.1_2165401_2167231_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_4|NZ_CP006712.1_2167362_2169231_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_3|NZ_CP006712.1_2169414_2169936_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|508aa|up_2|NZ_CP006712.1_2170861_2172385_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1252aa|up_1|NZ_CP006712.1_2172638_2176394_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP006712.1_2176403_2177105_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP006712.1_2177586_2179059_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP006712.1_2179110_2179716_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP006712.1_2179866_2180709_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP006712.1_2180708_2181563_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP006712.1_2181933_2182950_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP006712.1_2183157_2184486_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP006712.1_2184898_2185597_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP006712.1_2185683_2186061_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_8|NZ_CP006712.1_2186156_2186924_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_9|NZ_CP006712.1_2187091_2189839_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
