assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000568955.1_ASM56895v1	NZ_CP006711	Bifidobacterium breve 12L, complete genome	1	133594-133930	1	CRISPRCasFinder	no		DEDDh,cas3,WYL,c2c9_V-U4	Orphan	TACTGGTGGTTTTGCCCCGCTGAGG	25	0	0	NA	NA	NA	6	6	Orphan	DEDDh,cas3,WYL,c2c9_V-U4	NA,NA	NA|312aa|up_9|NZ_CP006711.1_120338_121274_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|356aa|up_8|NZ_CP006711.1_121336_122404_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_7|NZ_CP006711.1_122571_123858_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_6|NZ_CP006711.1_123881_125465_+	cd01031, EriC, ClC chloride channel EriC	NA|348aa|up_5|NZ_CP006711.1_125652_126696_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|356aa|up_4|NZ_CP006711.1_126023_127091_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|362aa|up_3|NZ_CP006711.1_127365_128451_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|509aa|up_2|NZ_CP006711.1_128877_130404_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NZ_CP006711.1_130608_132243_+	cd06174, MFS, Major Facilitator Superfamily	NA|351aa|up_0|NZ_CP006711.1_132312_133365_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NZ_CP006711.1_134352_135720_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP006711.1_136114_137167_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|351aa|down_2|NZ_CP006711.1_137594_138647_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|605aa|down_3|NZ_CP006711.1_138831_140646_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_4|NZ_CP006711.1_140917_141949_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|1471aa|down_5|NZ_CP006711.1_142854_147267_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|612aa|down_6|NZ_CP006711.1_147371_149207_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|320aa|down_7|NZ_CP006711.1_149463_150423_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|739aa|down_8|NZ_CP006711.1_150684_152901_-	PRK14507, PRK14507, malto-oligosyltrehalose synthase	NA|629aa|down_9|NZ_CP006711.1_153157_155044_-	cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family
GCF_000568955.1_ASM56895v1	NZ_CP006711	Bifidobacterium breve 12L, complete genome	2	564144-564279	1	PILER-CR	no		DEDDh,cas3,WYL,c2c9_V-U4	Orphan	TCGATTGGCTCGAGGTTTTGCTTCGCTGAGGG	32	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL,c2c9_V-U4	NA,NA	NA|430aa|up_9|NZ_CP006711.1_538907_540197_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|2175aa|up_8|NZ_CP006711.1_540210_546735_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|383aa|up_7|NZ_CP006711.1_546706_547855_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|1366aa|up_6|NZ_CP006711.1_547990_552088_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|1312aa|up_5|NZ_CP006711.1_552084_556020_+	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	NA|440aa|up_4|NZ_CP006711.1_556191_557511_+	pfam07690, MFS_1, Major Facilitator Superfamily	NA|252aa|up_3|NZ_CP006711.1_557598_558354_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|302aa|up_2|NZ_CP006711.1_558459_559365_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|619aa|up_1|NZ_CP006711.1_559444_561301_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|870aa|up_0|NZ_CP006711.1_561342_563952_+	TIGR02412, Aminopeptidase_N, aminopeptidase N, Streptomyces lividans type	NA|462aa|down_0|NZ_CP006711.1_564438_565824_+	PRK14318, glmM, phosphoglucosamine mutase; Provisional	NA|218aa|down_1|NZ_CP006711.1_565967_566621_+	PRK00150, def, peptide deformylase; Reviewed	NA|485aa|down_2|NZ_CP006711.1_566617_568072_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|375aa|down_3|NZ_CP006711.1_568423_569548_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|399aa|down_4|NZ_CP006711.1_569550_570747_+	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|308aa|down_5|NZ_CP006711.1_570750_571674_+	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|449aa|down_6|NZ_CP006711.1_571752_573099_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|159aa|down_7|NZ_CP006711.1_573212_573689_+	pfam01668, SmpB, SmpB protein	NA|315aa|down_8|NZ_CP006711.1_573810_574755_+	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|314aa|down_9|NZ_CP006711.1_574888_575830_+	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold
GCF_000568955.1_ASM56895v1	NZ_CP006711	Bifidobacterium breve 12L, complete genome	3	1305116-1305188	2	CRISPRCasFinder	no		DEDDh,cas3,WYL,c2c9_V-U4	Orphan	CAGCCCTGCGAGATTTGCAGTGCTGGG	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,c2c9_V-U4	NA|78aa|up_6|NZ_CP006711.1_1294840_1295074_-,NA|91aa|up_3|NZ_CP006711.1_1302751_1303024_-,NA|166aa|up_1|NZ_CP006711.1_1303807_1304305_-,NA|85aa|up_0|NZ_CP006711.1_1304301_1304556_-,NA|64aa|down_0|NZ_CP006711.1_1305830_1306022_-,NA|235aa|down_1|NZ_CP006711.1_1306187_1306892_+,NA|123aa|down_2|NZ_CP006711.1_1306903_1307272_-	NA|798aa|up_9|NZ_CP006711.1_1291201_1293595_-	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC	NA|117aa|up_8|NZ_CP006711.1_1293598_1293949_-	pfam12666, PrgI, PrgI family protein	NA|282aa|up_7|NZ_CP006711.1_1293980_1294826_-	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|78aa|up_6|NZ_CP006711.1_1294840_1295074_-	NA	NA|1790aa|up_5|NZ_CP006711.1_1295437_1300807_-	pfam16364, Antigen_C, Cell surface antigen C-terminus	NA|330aa|up_4|NZ_CP006711.1_1301158_1302148_-	pfam07554, FIVAR, FIVAR domain	NA|91aa|up_3|NZ_CP006711.1_1302751_1303024_-	NA	NA|222aa|up_2|NZ_CP006711.1_1303029_1303695_-	cd02042, ParAB_family, partition proteins ParAB family	NA|166aa|up_1|NZ_CP006711.1_1303807_1304305_-	NA	NA|85aa|up_0|NZ_CP006711.1_1304301_1304556_-	NA	NA|64aa|down_0|NZ_CP006711.1_1305830_1306022_-	NA	NA|235aa|down_1|NZ_CP006711.1_1306187_1306892_+	NA	NA|123aa|down_2|NZ_CP006711.1_1306903_1307272_-	NA	NA|89aa|down_3|NZ_CP006711.1_1307271_1307538_-	pfam08667, BetR, BetR domain	NA|180aa|down_4|NZ_CP006711.1_1308149_1308689_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|775aa|down_5|NZ_CP006711.1_1308789_1311114_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|159aa|down_6|NZ_CP006711.1_1311207_1311684_-	PRK00601, dut, dUTP diphosphatase	NA|98aa|down_7|NZ_CP006711.1_1311683_1311977_-	pfam13834, DUF4193, Domain of unknown function (DUF4193)	NA|358aa|down_8|NZ_CP006711.1_1312128_1313202_+	pfam11268, DUF3071, Protein of unknown function (DUF3071)	NA|421aa|down_9|NZ_CP006711.1_1313307_1314570_-	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase
GCF_000568955.1_ASM56895v1	NZ_CP006711	Bifidobacterium breve 12L, complete genome	4	1382799-1382887	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,c2c9_V-U4	Orphan	AGGGTGAAGCCGTTTATTTCCTGAATTT	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,c2c9_V-U4	NA,NA|86aa|down_0|NZ_CP006711.1_1382904_1383162_-,NA|139aa|down_3|NZ_CP006711.1_1385296_1385713_-	NA|259aa|up_9|NZ_CP006711.1_1368607_1369384_-	pfam11361, DUF3159, Protein of unknown function (DUF3159)	NA|282aa|up_8|NZ_CP006711.1_1369399_1370245_-	pfam12502, DUF3710, Protein of unknown function (DUF3710)	NA|287aa|up_7|NZ_CP006711.1_1370369_1371230_+	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|670aa|up_6|NZ_CP006711.1_1371538_1373548_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|335aa|up_5|NZ_CP006711.1_1373570_1374575_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_4|NZ_CP006711.1_1374593_1375520_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|547aa|up_3|NZ_CP006711.1_1375909_1377550_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|340aa|up_2|NZ_CP006711.1_1377803_1378823_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|271aa|up_1|NZ_CP006711.1_1378984_1379797_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|953aa|up_0|NZ_CP006711.1_1379793_1382652_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|86aa|down_0|NZ_CP006711.1_1382904_1383162_-	NA	NA|339aa|down_1|NZ_CP006711.1_1383247_1384264_-	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|327aa|down_2|NZ_CP006711.1_1384257_1385238_-	cd13632, PBP2_Aa-PDT_like, Catalytic domain of prephenate dehydratase from Arthrobacter aurescens and similar proteins, subgroup 3; the type 2 periplasmic binding protein fold	NA|139aa|down_3|NZ_CP006711.1_1385296_1385713_-	NA	NA|644aa|down_4|NZ_CP006711.1_1385872_1387804_-	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|202aa|down_5|NZ_CP006711.1_1388193_1388799_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|254aa|down_6|NZ_CP006711.1_1388815_1389577_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|1041aa|down_7|NZ_CP006711.1_1389573_1392696_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|450aa|down_8|NZ_CP006711.1_1392800_1394150_-	TIGR00895, transport_protein, benzoate transport	NA|433aa|down_9|NZ_CP006711.1_1394247_1395546_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_000568955.1_ASM56895v1	NZ_CP006711	Bifidobacterium breve 12L, complete genome	5	1978298-1978444	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,c2c9_V-U4	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL,c2c9_V-U4	NA|700aa|up_3|NZ_CP006711.1_1973493_1975593_+,NA|318aa|down_0|NZ_CP006711.1_1978558_1979512_+	NA|90aa|up_9|NZ_CP006711.1_1956953_1957223_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|3161aa|up_8|NZ_CP006711.1_1958243_1967726_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP006711.1_1967765_1969388_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|623aa|up_6|NZ_CP006711.1_1969380_1971249_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_5|NZ_CP006711.1_1971761_1972361_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP006711.1_1972362_1973322_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|700aa|up_3|NZ_CP006711.1_1973493_1975593_+	NA	NA|286aa|up_2|NZ_CP006711.1_1975671_1976529_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP006711.1_1976802_1977495_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP006711.1_1977510_1977942_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP006711.1_1978558_1979512_+	NA	NA|276aa|down_1|NZ_CP006711.1_1979867_1980695_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP006711.1_1980727_1980955_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP006711.1_1981284_1982490_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP006711.1_1982631_1983894_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP006711.1_1983989_1985123_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP006711.1_1985229_1986921_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP006711.1_1986987_1987239_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP006711.1_1987261_1987570_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1006aa|down_9|NZ_CP006711.1_1987756_1990774_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
