The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007004	Vibrio parahaemolyticus UCM-V493 chromosome 1, complete sequence	3445790	701957	767767	3445790	protease,transposase,integrase,tRNA	Vibrio_phage(10.0%)	59	755838:755855	784253:784270
WP_025441361.1|701957_702848_+|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	88.2	3.0e-155
WP_025441363.1|703866_705000_+	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	NA	NA	NA	NA	NA
WP_140318061.1|705849_707000_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	69.6	7.6e-111
WP_005455975.1|708220_708706_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	43.7	6.0e-25
WP_025441369.1|708824_709268_+	ubiquinone-binding protein	NA	NA	NA	NA	NA
WP_005456005.1|709257_709605_+	RnfH family protein	NA	NA	NA	NA	NA
WP_005455981.1|709705_710065_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_025441370.1|710304_711969_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_005496293.1|712136_713327_-	DUF3103 domain-containing protein	NA	NA	NA	NA	NA
WP_005455932.1|713577_714462_-	NAD(+) kinase	NA	NA	NA	NA	NA
WP_025441371.1|714607_715204_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_025441372.1|715621_716896_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_005455943.1|717243_719157_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	50.4	8.4e-147
WP_005482993.1|719361_720507_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	32.8	2.2e-25
WP_025441373.1|720645_721089_-	type IV pilin protein	NA	NA	NA	NA	NA
WP_025441374.1|721185_721698_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_025441375.1|721678_722269_+	pilus assembly protein PilW	NA	NA	NA	NA	NA
WP_025441376.1|722265_723543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025441377.1|723532_723946_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_005483743.1|724296_725856_+	aminobenzoyl-glutamate transporter	NA	NA	NA	NA	NA
WP_015296323.1|726020_726545_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
WP_025441378.1|727526_728372_+	magnesium transporter	NA	NA	NA	NA	NA
WP_025441379.1|728350_729772_-	serine-type D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
WP_023624268.1|729989_730997_-	porin	NA	NA	NA	NA	NA
WP_005485311.1|731534_732008_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_005380066.1|732089_732386_-	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA	NA
WP_025441380.1|732524_733154_+	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA	NA
WP_025441381.1|733262_735242_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	A0A0P0BXI2	Ostreococcus_lucimarinus_virus	44.0	1.7e-118
WP_005481601.1|735294_736125_+	dihydropteroate synthase	NA	NA	NA	NA	NA
WP_025441382.1|736144_737485_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_025441383.1|737707_738046_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_005456065.1|738505_738961_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_005456069.1|738997_740485_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_005481598.1|740507_743225_+	translation initiation factor IF-2	NA	NA	NA	NA	NA
WP_005456060.1|743339_743735_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_025441384.1|743734_744679_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_005456110.1|744829_745099_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005456067.1|745431_747567_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_025441385.1|747747_748668_+	lipoprotein NlpI	NA	NA	NA	NA	NA
WP_024702430.1|748764_749178_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_025441386.1|749235_750582_+	sodium-coupled multidrug efflux MATE transporter VmrA	NA	NA	NA	NA	NA
WP_025441387.1|750635_751514_-	U32 family peptidase	NA	NA	NA	NA	NA
WP_005456088.1|751534_752548_-	U32 family peptidase	NA	Q6DW11	Phage_TP	31.6	3.8e-21
WP_005456059.1|752698_754738_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA	NA
WP_005490392.1|755104_755632_+	SCP2 domain-containing protein	NA	NA	NA	NA	NA
WP_017447717.1|755615_756119_+	N-acetyltransferase	NA	NA	NA	NA	NA
755838:755855	attL	GCACCATTGGCTGTTCAT	NA	NA	NA	NA
WP_005456073.1|756186_756636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025441388.1|756687_757086_+	DNA polymerase III subunit psi	NA	NA	NA	NA	NA
WP_025441389.1|757151_757607_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_012368405.1|758402_758597_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_025441390.1|758613_759855_-|integrase	integrase family protein	integrase	A0A291AWU1	Escherichia_phage	39.5	5.0e-76
WP_039847056.1|759856_760126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025441391.1|760128_761103_-	ParM/StbA family protein	NA	NA	NA	NA	NA
WP_025441392.1|761567_762011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025441393.1|762021_763290_-	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	60.2	1.1e-142
WP_025441394.1|763297_763669_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A218MND2	uncultured_virus	51.3	1.5e-28
WP_158088367.1|763675_764755_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_025441396.1|765068_765647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025441397.1|765643_767767_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
784253:784270	attR	ATGAACAGCCAATGGTGC	NA	NA	NA	NA
>prophage 2
NZ_CP007004	Vibrio parahaemolyticus UCM-V493 chromosome 1, complete sequence	3445790	1757325	1767251	3445790		Vibrio_phage(90.0%)	14	NA	NA
WP_023585872.1|1757325_1759056_+	response regulator	NA	A0A1V0SGX0	Hokovirus	31.3	2.7e-43
WP_025441865.1|1759222_1759591_-	hypothetical protein	NA	A0A1W6UGD7	Vibrio_phage	64.7	2.0e-36
WP_025441866.1|1759787_1760060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025441867.1|1760059_1760284_+	hypothetical protein	NA	G8IRU4	Vibrio_phage	56.1	9.2e-13
WP_025441868.1|1760276_1761533_+	replication protein	NA	G8IRU5	Vibrio_phage	62.2	1.0e-148
WP_025441869.1|1761538_1761865_+	hypothetical protein	NA	G8IRU6	Vibrio_phage	47.4	6.2e-18
WP_025441870.1|1761861_1762107_+	hypothetical protein	NA	R9TMT7	Vibrio_phage	43.9	6.3e-07
WP_025441871.1|1762135_1762354_+	hypothetical protein	NA	R9TRU5	Vibrio_phage	53.1	1.2e-06
WP_025441872.1|1762487_1763984_+	chemotaxis protein	NA	NA	NA	NA	NA
WP_025441873.1|1763983_1764316_+	DUF2523 domain-containing protein	NA	Q64EV1	Vibrio_phage	36.4	1.4e-17
WP_025441874.1|1764319_1765744_+	toxin	NA	Q64EV0	Vibrio_phage	51.9	1.7e-123
WP_025441875.1|1765842_1766052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025441876.1|1766380_1766845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025441877.1|1766876_1767251_-	phage protein	NA	A0A1W6UG37	Vibrio_phage	92.7	2.3e-61
>prophage 3
NZ_CP007004	Vibrio parahaemolyticus UCM-V493 chromosome 1, complete sequence	3445790	2733995	2740697	3445790		Staphylococcus_phage(50.0%)	7	NA	NA
WP_005440184.1|2733995_2734466_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	49.3	1.7e-32
WP_005496254.1|2734635_2735745_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.6	1.5e-63
WP_005483039.1|2735914_2736568_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	37.5	1.6e-33
WP_025442212.1|2736580_2737705_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	36.0	1.8e-48
WP_005482986.1|2737712_2738162_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_025442213.1|2738289_2739540_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.9	1.6e-98
WP_005483011.1|2739557_2740697_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	41.7	1.3e-62
>prophage 4
NZ_CP007004	Vibrio parahaemolyticus UCM-V493 chromosome 1, complete sequence	3445790	2852708	2869892	3445790	tRNA	uncultured_Mediterranean_phage(18.18%)	15	NA	NA
WP_005455546.1|2852708_2855291_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	37.9	1.0e-78
WP_005455548.1|2855433_2855901_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_005478550.1|2856024_2857068_-	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	60.7	8.1e-112
WP_021450025.1|2857268_2857751_-	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	48.7	2.9e-27
WP_025442244.1|2857835_2860397_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	24.0	1.5e-34
WP_005478537.1|2860476_2861466_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	35.2	6.9e-36
WP_005455560.1|2861546_2862470_-	peptidoglycan DD-metalloendopeptidase family protein	NA	D7RWE0	Brochothrix_phage	35.2	4.1e-06
WP_005455562.1|2862484_2863111_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	1.3e-35
WP_025442245.1|2863110_2863887_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.4	5.0e-66
WP_021450029.1|2863886_2864930_-|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_005380896.1|2864976_2865453_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_025442246.1|2865470_2866175_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	A0A2H4UTB4	Bodo_saltans_virus	23.6	5.9e-05
WP_005455577.1|2866176_2866458_-	cell division protein FtsB	NA	NA	NA	NA	NA
WP_005455579.1|2866871_2868173_-	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	59.2	4.2e-134
WP_005455581.1|2868251_2869892_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.4	4.2e-155
>prophage 1
NZ_CP007005	Vibrio parahaemolyticus UCM-V493 chromosome 2, complete sequence	1698252	848008	858183	1698252	coat	Vibrio_phage(87.5%)	11	NA	NA
WP_005389163.1|848008_848377_-	hypothetical protein	NA	Q858Q3	Vibrio_phage	71.2	1.6e-41
WP_005389161.1|848561_848864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025442757.1|848863_850894_+	replication endonuclease	NA	A0A0F6YPA7	Vibrio_phage	53.4	2.9e-198
WP_005389159.1|850977_851283_+	hypothetical protein	NA	Q2PZB5	Vibrio_virus	51.0	1.1e-19
WP_025442758.1|851552_851816_+	hypothetical protein	NA	R9TI50	Vibrio_phage	45.6	5.2e-07
WP_024701224.1|853485_853845_+|coat	minor coat protein	coat	R9TIT8	Vibrio_phage	45.6	4.6e-22
WP_025442760.1|853844_854918_+	hypothetical protein	NA	O80263	Vibrio_phage	63.1	2.1e-126
WP_025442761.1|854935_856288_+	type II secretory pathway protein	NA	R9TEZ5	Vibrio_phage	56.5	3.0e-122
WP_024701221.1|856325_856964_-	DUF2726 domain-containing protein	NA	NA	NA	NA	NA
WP_025442762.1|857128_857803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025442763.1|857799_858183_-	phage protein	NA	Q9MCC4	Vibrio_phage	62.4	2.2e-38
