assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000568455.1_ASM56845v1	NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	1	434270-434370	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_8|NZ_CP007176.1_425842_426052_-,NA|128aa|up_6|NZ_CP007176.1_426876_427260_-,NA|34aa|up_0|NZ_CP007176.1_433494_433596_+,NA|221aa|down_1|NZ_CP007176.1_435460_436123_-,NA|179aa|down_7|NZ_CP007176.1_442214_442751_-	NA|84aa|up_9|NZ_CP007176.1_425552_425804_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP007176.1_425842_426052_-	NA	NA|194aa|up_7|NZ_CP007176.1_426229_426811_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP007176.1_426876_427260_-	NA	NA|209aa|up_5|NZ_CP007176.1_427514_428141_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP007176.1_428585_430109_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP007176.1_430124_430694_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP007176.1_431185_431941_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP007176.1_432021_433410_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP007176.1_433494_433596_+	NA	NA|319aa|down_0|NZ_CP007176.1_434386_435343_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP007176.1_435460_436123_-	NA	NA|136aa|down_2|NZ_CP007176.1_436265_436673_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP007176.1_437185_437764_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP007176.1_437763_439032_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP007176.1_439069_440536_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP007176.1_440560_442102_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP007176.1_442214_442751_-	NA	NA|235aa|down_8|NZ_CP007176.1_443143_443848_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP007176.1_444246_444519_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000568455.1_ASM56845v1	NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	2	678609-678701	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP007176.1_675093_675201_+,NA|169aa|down_4|NZ_CP007176.1_682448_682955_+,NA|239aa|down_5|NZ_CP007176.1_683116_683833_+	NA|313aa|up_9|NZ_CP007176.1_669295_670234_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP007176.1_670444_670981_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP007176.1_671149_671626_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP007176.1_671665_672961_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP007176.1_672988_673510_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP007176.1_674008_675019_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP007176.1_675093_675201_+	NA	NA|139aa|up_2|NZ_CP007176.1_675293_675710_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP007176.1_675706_677368_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP007176.1_677755_678391_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP007176.1_678769_679657_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP007176.1_679804_680755_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP007176.1_680809_681529_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP007176.1_681512_682313_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP007176.1_682448_682955_+	NA	NA|239aa|down_5|NZ_CP007176.1_683116_683833_+	NA	NA|263aa|down_6|NZ_CP007176.1_684001_684790_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP007176.1_685040_685415_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|179aa|down_8|NZ_CP007176.1_687130_687667_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|168aa|down_9|NZ_CP007176.1_687647_688151_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_000568455.1_ASM56845v1	NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	3	754950-755048	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NZ_CP007176.1_752977_753094_+,NA|230aa|down_2|NZ_CP007176.1_756869_757559_-,NA|100aa|down_5|NZ_CP007176.1_758728_759028_+	NA|206aa|up_9|NZ_CP007176.1_744125_744743_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|336aa|up_8|NZ_CP007176.1_744758_745766_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_7|NZ_CP007176.1_746353_747151_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_6|NZ_CP007176.1_747511_748156_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|120aa|up_5|NZ_CP007176.1_751147_751507_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP007176.1_751696_752413_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP007176.1_752412_752886_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP007176.1_752977_753094_+	NA	NA|215aa|up_1|NZ_CP007176.1_753238_753883_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP007176.1_753998_754865_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP007176.1_755065_756286_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_CP007176.1_756282_756771_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_CP007176.1_756869_757559_-	NA	NA|148aa|down_3|NZ_CP007176.1_757685_758129_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|132aa|down_4|NZ_CP007176.1_758195_758591_+	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|100aa|down_5|NZ_CP007176.1_758728_759028_+	NA	NA|181aa|down_6|NZ_CP007176.1_759107_759650_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_CP007176.1_759745_760312_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_CP007176.1_760313_760772_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_CP007176.1_760774_761458_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_000568455.1_ASM56845v1	NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	4	854357-854442	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	6	854387-854412|854387-854412|854387-854412|854387-854412|854387-854412|854387-854412	NZ_CP007176.1_817349-817324|NZ_CP007176.1_960436-960411|NZ_CP007176.1_2878474-2878499|NZ_CP007176.1_2878530-2878555|NZ_CP007176.1_817405-817380|NZ_CP007176.1_960380-960355	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP007176.1_841609_842449_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP007176.1_842622_843273_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP007176.1_843269_843506_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP007176.1_843774_845760_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP007176.1_845767_848614_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP007176.1_849275_850208_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP007176.1_850213_851053_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP007176.1_851060_851546_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP007176.1_851553_852993_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP007176.1_853059_853995_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP007176.1_854874_855786_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP007176.1_855782_856778_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP007176.1_856887_857832_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP007176.1_858405_858993_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP007176.1_859235_860138_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP007176.1_860839_861469_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP007176.1_862111_863125_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP007176.1_863177_864188_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP007176.1_864326_865517_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP007176.1_865638_866400_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_000568455.1_ASM56845v1	NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	5	897570-897651	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	897594-897627|897594-897627	NZ_CP007176.1_1386472-1386439|NZ_CP007176.1_1475631-1475664	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NZ_CP007176.1_890673_891255_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP007176.1_891327_891945_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP007176.1_892099_892594_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP007176.1_892992_893415_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP007176.1_893562_894279_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP007176.1_894361_894901_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP007176.1_895050_895371_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP007176.1_895514_895871_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP007176.1_896028_896409_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP007176.1_896587_897466_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP007176.1_898207_898594_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP007176.1_898586_898883_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP007176.1_899132_900158_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP007176.1_900150_900846_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP007176.1_900863_901685_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP007176.1_901827_903048_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP007176.1_903135_903864_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP007176.1_903887_904616_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP007176.1_904632_905091_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP007176.1_905102_905435_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_000568455.1_ASM56845v1	NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	6	1093938-1094025	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|NZ_CP007176.1_1094034_1094169_-,NA|432aa|down_1|NZ_CP007176.1_1094320_1095616_+	NA|224aa|up_9|NZ_CP007176.1_1081728_1082400_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP007176.1_1082392_1084582_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP007176.1_1084560_1086045_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP007176.1_1086037_1087066_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP007176.1_1087068_1087635_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP007176.1_1087649_1089128_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP007176.1_1089149_1090397_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP007176.1_1090661_1091468_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP007176.1_1091460_1092861_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP007176.1_1092875_1093451_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP007176.1_1094034_1094169_-	NA	NA|432aa|down_1|NZ_CP007176.1_1094320_1095616_+	NA	NA|391aa|down_2|NZ_CP007176.1_1096040_1097213_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP007176.1_1097266_1097809_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP007176.1_1097962_1098229_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP007176.1_1098231_1099950_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP007176.1_1100186_1100420_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP007176.1_1100617_1101979_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP007176.1_1101975_1102995_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP007176.1_1103127_1103790_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000568455.1_ASM56845v1	NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	7	2078979-2079057	7	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2079002-2079034|2079002-2079034|2079002-2079034|2079002-2079034|2079002-2079034|2079002-2079034	NZ_CP007176.1_854423-854455|NZ_CP007176.1_1178301-1178269|NZ_CP007176.1_1386426-1386394|NZ_CP007176.1_1700907-1700939|NZ_CP007176.1_2713120-2713152|NZ_CP007176.1_1475677-1475709	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP007176.1_2073173_2073449_+,NA|129aa|up_1|NZ_CP007176.1_2077434_2077821_-,NA|138aa|down_1|NZ_CP007176.1_2080799_2081213_-,NA|37aa|down_2|NZ_CP007176.1_2081241_2081352_-,NA|31aa|down_6|NZ_CP007176.1_2084357_2084450_-	NA|419aa|up_9|NZ_CP007176.1_2071096_2072353_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP007176.1_2072355_2072556_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP007176.1_2072702_2073167_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP007176.1_2073173_2073449_+	NA	NA|406aa|up_5|NZ_CP007176.1_2073726_2074944_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP007176.1_2075059_2075689_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP007176.1_2075678_2076722_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP007176.1_2076718_2077420_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP007176.1_2077434_2077821_-	NA	NA|253aa|up_0|NZ_CP007176.1_2078037_2078796_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP007176.1_2079323_2080310_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP007176.1_2080799_2081213_-	NA	NA|37aa|down_2|NZ_CP007176.1_2081241_2081352_-	NA	NA|244aa|down_3|NZ_CP007176.1_2081437_2082169_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP007176.1_2082170_2083484_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP007176.1_2083775_2084276_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP007176.1_2084357_2084450_-	NA	DEDDh|185aa|down_7|NZ_CP007176.1_2084664_2085219_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP007176.1_2085286_2086357_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP007176.1_2086603_2087134_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_000568455.1_ASM56845v1	NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	8	2313932-2314082	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP007176.1_2308803_2309034_-,NA|364aa|up_0|NZ_CP007176.1_2312822_2313914_+,NA|35aa|down_0|NZ_CP007176.1_2314413_2314518_-,NA|31aa|down_2|NZ_CP007176.1_2316629_2316722_+	NA|237aa|up_9|NZ_CP007176.1_2304413_2305124_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP007176.1_2305244_2305688_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP007176.1_2305887_2306301_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP007176.1_2306758_2308132_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP007176.1_2308803_2309034_-	NA	NA|313aa|up_4|NZ_CP007176.1_2309064_2310003_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP007176.1_2310437_2311103_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP007176.1_2311254_2311575_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP007176.1_2311576_2312557_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP007176.1_2312822_2313914_+	NA	NA|35aa|down_0|NZ_CP007176.1_2314413_2314518_-	NA	NA|379aa|down_1|NZ_CP007176.1_2315204_2316341_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP007176.1_2316629_2316722_+	NA	NA|286aa|down_3|NZ_CP007176.1_2317426_2318284_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP007176.1_2318351_2319134_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP007176.1_2319365_2321171_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP007176.1_2321851_2323390_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP007176.1_2323424_2325557_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP007176.1_2325568_2326003_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP007176.1_2326002_2327109_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_000568455.1_ASM56845v1	NZ_CP007176	Staphylococcus aureus USA300-ISMMS1 chromosome, complete genome	9	2437849-2438042	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2437872-2437904|2437872-2437904|2437872-2437904|2437872-2437904|2437872-2437904|2437928-2437963|2437928-2437963|2437928-2437963|2437928-2437963|2437987-2438019|2437987-2438019|2437987-2438019|2437987-2438019	NZ_CP007176.1_854423-854455|NZ_CP007176.1_1178301-1178269|NZ_CP007176.1_1386426-1386394|NZ_CP007176.1_1475677-1475709|NZ_CP007176.1_2713120-2713152|NZ_CP007176.1_1178248-1178213|NZ_CP007176.1_1879394-1879359|NZ_CP007176.1_1700846-1700881|NZ_CP007176.1_2089805-2089840|NZ_CP007176.1_854423-854455|NZ_CP007176.1_1178301-1178269|NZ_CP007176.1_1386426-1386394|NZ_CP007176.1_2713120-2713152	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP007176.1_2428376_2428541_+,NA|106aa|up_8|NZ_CP007176.1_2428785_2429103_+,NA|84aa|up_5|NZ_CP007176.1_2434227_2434479_+,NA|57aa|up_0|NZ_CP007176.1_2437618_2437789_+,NA	NA|55aa|up_9|NZ_CP007176.1_2428376_2428541_+	NA	NA|106aa|up_8|NZ_CP007176.1_2428785_2429103_+	NA	NA|1056aa|up_7|NZ_CP007176.1_2429289_2432457_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP007176.1_2432573_2433839_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP007176.1_2434227_2434479_+	NA	NA|255aa|up_4|NZ_CP007176.1_2434470_2435235_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP007176.1_2435396_2435837_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP007176.1_2435829_2437041_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP007176.1_2437142_2437493_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP007176.1_2437618_2437789_+	NA	NA|341aa|down_0|NZ_CP007176.1_2438183_2439206_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP007176.1_2439225_2439825_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP007176.1_2439831_2440065_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP007176.1_2440070_2440517_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP007176.1_2440530_2441016_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP007176.1_2441012_2442272_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP007176.1_2442334_2442829_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP007176.1_2442830_2443337_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP007176.1_2443367_2444372_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP007176.1_2444541_2445147_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
