assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000565155.1_ASM56515v1	NZ_CP007172	Listeria ivanovii WSLC3009 chromosome, complete genome	1	506867-507153	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,cas3,WYL,DEDDh	Orphan	GTTTTAATTACTTATTGTGAAATGTAAAT,GTTTTAATTACTTATTGTGAAATGTAAAT,GTTTTAATTACTTATTNTGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	3,4,4	4	Orphan	csa3,DinG,cas3,WYL,DEDDh	NA|133aa|up_5|NZ_CP007172.1_501841_502240_+,NA|128aa|down_7|NZ_CP007172.1_513311_513695_+,NA|480aa|down_9|NZ_CP007172.1_514601_516041_+	NA|217aa|up_9|NZ_CP007172.1_497903_498554_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP007172.1_498662_500723_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP007172.1_500726_501329_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP007172.1_501356_501824_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP007172.1_501841_502240_+	NA	NA|214aa|up_4|NZ_CP007172.1_502250_502892_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP007172.1_502896_503943_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP007172.1_503959_504253_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP007172.1_504267_505539_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP007172.1_505676_506612_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|196aa|down_0|NZ_CP007172.1_507231_507819_+	cd03577, NTR_TIMP_like, NTR domain, TIMP-like subfamily; TIMPs, or tissue inibitors of metalloproteases, are essential regulators of extracellular matrix turnover and remodeling	NA|227aa|down_1|NZ_CP007172.1_507889_508570_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP007172.1_508588_508948_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP007172.1_508954_509413_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|604aa|down_4|NZ_CP007172.1_509783_511595_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP007172.1_511685_512117_+	pfam00582, Usp, Universal stress protein family	NA|271aa|down_6|NZ_CP007172.1_512151_512964_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|down_7|NZ_CP007172.1_513311_513695_+	NA	NA|270aa|down_8|NZ_CP007172.1_513795_514605_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|480aa|down_9|NZ_CP007172.1_514601_516041_+	NA
GCF_000565155.1_ASM56515v1	NZ_CP007172	Listeria ivanovii WSLC3009 chromosome, complete genome	2	516141-516753	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,cas3,WYL,DEDDh	Orphan	GTTTTAATTACTTATTATGAAATGTAAAT,GTTTTAATTACTTATTATGAAATGTAAAT,GTTTTAATTACTTATTATGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	9,9,9	9	Orphan	csa3,DinG,cas3,WYL,DEDDh	NA|128aa|up_2|NZ_CP007172.1_513311_513695_+,NA|480aa|up_0|NZ_CP007172.1_514601_516041_+,NA	NA|196aa|up_9|NZ_CP007172.1_507231_507819_+	cd03577, NTR_TIMP_like, NTR domain, TIMP-like subfamily; TIMPs, or tissue inibitors of metalloproteases, are essential regulators of extracellular matrix turnover and remodeling	NA|227aa|up_8|NZ_CP007172.1_507889_508570_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|up_7|NZ_CP007172.1_508588_508948_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|up_6|NZ_CP007172.1_508954_509413_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|604aa|up_5|NZ_CP007172.1_509783_511595_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|up_4|NZ_CP007172.1_511685_512117_+	pfam00582, Usp, Universal stress protein family	NA|271aa|up_3|NZ_CP007172.1_512151_512964_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_2|NZ_CP007172.1_513311_513695_+	NA	NA|270aa|up_1|NZ_CP007172.1_513795_514605_+	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|480aa|up_0|NZ_CP007172.1_514601_516041_+	NA	NA|415aa|down_0|NZ_CP007172.1_517360_518605_+	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|297aa|down_1|NZ_CP007172.1_518683_519574_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|279aa|down_2|NZ_CP007172.1_519576_520413_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|810aa|down_3|NZ_CP007172.1_520428_522858_+	cd10791, GH38N_AMII_like_1, N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to alpha-mannosidases; glycoside hydrolase family 38 (GH38)	NA|289aa|down_4|NZ_CP007172.1_522871_523738_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|478aa|down_5|NZ_CP007172.1_523715_525149_+	pfam06824, Glyco_hydro_125, Metal-independent alpha-mannosidase (GH125)	NA|291aa|down_6|NZ_CP007172.1_525247_526120_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|583aa|down_7|NZ_CP007172.1_526241_527990_+	cd07010, cupin_PMI_type_I_N_bac, Phosphomannose isomerase in bacteria and archaea, N-terminal cupin domain	NA|126aa|down_8|NZ_CP007172.1_528074_528452_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NZ_CP007172.1_528596_530012_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_000565155.1_ASM56515v1	NZ_CP007172	Listeria ivanovii WSLC3009 chromosome, complete genome	3	786770-787170	3	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,DEDDh	Orphan	ACAACCAGCTAACGAATTTAGAT	23	0	0	NA	NA	NA	6	6	Orphan	csa3,DinG,cas3,WYL,DEDDh	NA|167aa|up_9|NZ_CP007172.1_776639_777140_+,NA|251aa|down_7|NZ_CP007172.1_795038_795791_+	NA|167aa|up_9|NZ_CP007172.1_776639_777140_+	NA	NA|186aa|up_8|NZ_CP007172.1_777302_777860_+	PRK08118, PRK08118, DNA topology modulation protein	NA|280aa|up_7|NZ_CP007172.1_777990_778830_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|227aa|up_6|NZ_CP007172.1_778951_779632_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|204aa|up_5|NZ_CP007172.1_779717_780329_+	pfam13577, SnoaL_4, SnoaL-like domain	NA|261aa|up_4|NZ_CP007172.1_780448_781231_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|269aa|up_3|NZ_CP007172.1_782333_783140_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|221aa|up_2|NZ_CP007172.1_783088_783751_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|68aa|up_1|NZ_CP007172.1_783917_784121_+	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|335aa|up_0|NZ_CP007172.1_784955_785960_+	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively	NA|296aa|down_0|NZ_CP007172.1_788220_789108_+	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|322aa|down_1|NZ_CP007172.1_789107_790073_+	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|203aa|down_2|NZ_CP007172.1_790072_790681_+	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|207aa|down_3|NZ_CP007172.1_790689_791310_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|419aa|down_4|NZ_CP007172.1_791636_792893_+	COG2262, HflX, GTPases [General function prediction only]	NA|291aa|down_5|NZ_CP007172.1_792969_793842_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|330aa|down_6|NZ_CP007172.1_793846_794836_+	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|251aa|down_7|NZ_CP007172.1_795038_795791_+	NA	NA|217aa|down_8|NZ_CP007172.1_795812_796463_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|330aa|down_9|NZ_CP007172.1_796509_797499_-	cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases
GCF_000565155.1_ASM56515v1	NZ_CP007172	Listeria ivanovii WSLC3009 chromosome, complete genome	4	2761864-2762043	3	PILER-CR	no		csa3,DinG,cas3,WYL,DEDDh	Orphan	TATTATTACTAAGGTCTA	18	0	0	NA	NA	NA	2	2	Orphan	csa3,DinG,cas3,WYL,DEDDh	NA|250aa|up_9|NZ_CP007172.1_2748286_2749036_-,NA|262aa|up_8|NZ_CP007172.1_2749733_2750519_-,NA	NA|250aa|up_9|NZ_CP007172.1_2748286_2749036_-	NA	NA|262aa|up_8|NZ_CP007172.1_2749733_2750519_-	NA	NA|136aa|up_7|NZ_CP007172.1_2750584_2750992_-	pfam10916, DUF2712, Protein of unknown function (DUF2712)	NA|396aa|up_6|NZ_CP007172.1_2751185_2752373_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|696aa|up_5|NZ_CP007172.1_2752482_2754570_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|up_4|NZ_CP007172.1_2754635_2755106_-	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|138aa|up_3|NZ_CP007172.1_2755136_2755550_-	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|466aa|up_2|NZ_CP007172.1_2757236_2758634_-	PRK01096, PRK01096, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|160aa|up_1|NZ_CP007172.1_2758648_2759128_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|524aa|up_0|NZ_CP007172.1_2759175_2760747_+	pfam13306, LRR_5, Leucine rich repeats (6 copies)	NA|215aa|down_0|NZ_CP007172.1_2762847_2763492_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|672aa|down_1|NZ_CP007172.1_2763488_2765504_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|225aa|down_2|NZ_CP007172.1_2765537_2766212_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|147aa|down_3|NZ_CP007172.1_2766220_2766661_-	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	NA|344aa|down_4|NZ_CP007172.1_2766855_2767887_-	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|351aa|down_5|NZ_CP007172.1_2767888_2768941_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|424aa|down_6|NZ_CP007172.1_2768977_2770249_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|94aa|down_7|NZ_CP007172.1_2770310_2770592_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|155aa|down_8|NZ_CP007172.1_2770648_2771113_-	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|690aa|down_9|NZ_CP007172.1_2771146_2773216_-	COG3711, BglG, Transcriptional antiterminator [Transcription]
GCF_000565155.1_ASM56515v1	NZ_CP007172	Listeria ivanovii WSLC3009 chromosome, complete genome	5	2844079-2844191	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,DEDDh	Orphan	AACGCGAGGATTTAATCCTTCGTGGAAGTTTCAAAA	36	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,DEDDh	NA,NA|74aa|down_2|NZ_CP007172.1_2844939_2845161_-,NA|158aa|down_4|NZ_CP007172.1_2847419_2847893_+,NA|214aa|down_5|NZ_CP007172.1_2847928_2848570_-	NA|470aa|up_9|NZ_CP007172.1_2833845_2835255_-	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|246aa|up_8|NZ_CP007172.1_2835251_2835989_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|681aa|up_7|NZ_CP007172.1_2835992_2838035_-	cd06593, GH31_xylosidase_YicI, alpha-xylosidase YicI-like	NA|451aa|up_6|NZ_CP007172.1_2838277_2839630_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|99aa|up_5|NZ_CP007172.1_2839655_2839952_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|240aa|up_4|NZ_CP007172.1_2840106_2840826_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|81aa|up_3|NZ_CP007172.1_2840926_2841169_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_CP007172.1_2841183_2841780_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_CP007172.1_2841888_2842206_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|578aa|up_0|NZ_CP007172.1_2842235_2843969_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_CP007172.1_2844272_2844737_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|68aa|down_1|NZ_CP007172.1_2844733_2844937_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_CP007172.1_2844939_2845161_-	NA	NA|455aa|down_3|NZ_CP007172.1_2845294_2846659_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|158aa|down_4|NZ_CP007172.1_2847419_2847893_+	NA	NA|214aa|down_5|NZ_CP007172.1_2847928_2848570_-	NA	NA|505aa|down_6|NZ_CP007172.1_2849275_2850790_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|314aa|down_7|NZ_CP007172.1_2850902_2851844_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|312aa|down_8|NZ_CP007172.1_2851887_2852823_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NZ_CP007172.1_2852965_2854705_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
