assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000550785.1_ASM55078v1	NZ_CP004350	Corynebacterium casei LMG S-19264 chromosome, complete genome	1	273258-273352	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csb2gr5,WYL,cas4,DinG,RT	Orphan	TCGGGCATTTCCATACCTTCTGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csb2gr5,WYL,cas4,DinG,RT	NA|172aa|up_4|NZ_CP004350.1_267528_268044_-,NA|93aa|down_0|NZ_CP004350.1_273647_273926_-,NA|242aa|down_3|NZ_CP004350.1_276756_277482_+,NA|144aa|down_5|NZ_CP004350.1_278965_279397_+,NA|344aa|down_6|NZ_CP004350.1_279421_280453_+	NA|162aa|up_9|NZ_CP004350.1_259831_260317_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|338aa|up_8|NZ_CP004350.1_260303_261317_+	PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional	NA|189aa|up_7|NZ_CP004350.1_261347_261914_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|1131aa|up_6|NZ_CP004350.1_262038_265431_-	pfam04602, Arabinose_trans, Mycobacterial cell wall arabinan synthesis protein	NA|607aa|up_5|NZ_CP004350.1_265442_267263_-	pfam12250, AftA_N, Arabinofuranosyltransferase N terminal	NA|172aa|up_4|NZ_CP004350.1_267528_268044_-	NA	NA|172aa|up_3|NZ_CP004350.1_268150_268666_-	cd09968, UP_III, Uroplakin III	NA|545aa|up_2|NZ_CP004350.1_268665_270300_-	COG5479, COG5479, Uncharacterized protein potentially involved in peptidoglycan biosynthesis [Cell envelope biogenesis, outer membrane]	NA|253aa|up_1|NZ_CP004350.1_270589_271348_-	PRK07904, PRK07904, decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase	NA|472aa|up_0|NZ_CP004350.1_271361_272777_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|93aa|down_0|NZ_CP004350.1_273647_273926_-	NA	NA|485aa|down_1|NZ_CP004350.1_273949_275404_-	cd17504, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide)-like multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|340aa|down_2|NZ_CP004350.1_275467_276487_-	cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases	NA|242aa|down_3|NZ_CP004350.1_276756_277482_+	NA	NA|208aa|down_4|NZ_CP004350.1_278122_278746_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|144aa|down_5|NZ_CP004350.1_278965_279397_+	NA	NA|344aa|down_6|NZ_CP004350.1_279421_280453_+	NA	NA|137aa|down_7|NZ_CP004350.1_280459_280870_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|153aa|down_8|NZ_CP004350.1_280883_281342_+	pfam04138, GtrA, GtrA-like protein	NA|304aa|down_9|NZ_CP004350.1_281432_282344_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]
GCF_000550785.1_ASM55078v1	NZ_CP004350	Corynebacterium casei LMG S-19264 chromosome, complete genome	2	953570-959211	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csb2gr5,WYL,cas4,DinG,RT	Type I-E	ATGTTCCCCGCACCAGCGGGGATGAGCC,ATGTTCCCCGCACCAGCGGGGATGAGCC,ATGTTCCCCGCACCAGCGGGGATGAGCC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	92,92,57	92	TypeI-E	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csb2gr5,WYL,cas4,DinG,RT	NA,NA|136aa|down_4|NZ_CP004350.1_963268_963676_+,NA|141aa|down_9|NZ_CP004350.1_966056_966479_+	NA|192aa|up_9|NZ_CP004350.1_942398_942974_+	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|283aa|up_8|NZ_CP004350.1_943050_943899_+	PRK05756, PRK05756, pyridoxal kinase PdxY	cas3|943aa|up_7|NZ_CP004350.1_944226_947055_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|575aa|up_6|NZ_CP004350.1_947158_948883_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|194aa|up_5|NZ_CP004350.1_948957_949539_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|386aa|up_4|NZ_CP004350.1_949589_950747_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|up_3|NZ_CP004350.1_950762_951479_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|234aa|up_2|NZ_CP004350.1_951475_952177_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|297aa|up_1|NZ_CP004350.1_952229_953120_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|119aa|up_0|NZ_CP004350.1_953116_953473_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|278aa|down_0|NZ_CP004350.1_959650_960484_-	pfam13683, rve_3, Integrase core domain	NA|95aa|down_1|NZ_CP004350.1_960507_960792_-	pfam01527, HTH_Tnp_1, Transposase	NA|480aa|down_2|NZ_CP004350.1_961180_962620_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|98aa|down_3|NZ_CP004350.1_962825_963119_+	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|136aa|down_4|NZ_CP004350.1_963268_963676_+	NA	NA|77aa|down_5|NZ_CP004350.1_963665_963896_+	pfam14076, DUF4258, Domain of unknown function (DUF4258)	NA|111aa|down_6|NZ_CP004350.1_963901_964234_+	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|173aa|down_7|NZ_CP004350.1_964643_965162_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|191aa|down_8|NZ_CP004350.1_965277_965850_+	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|141aa|down_9|NZ_CP004350.1_966056_966479_+	NA
GCF_000550785.1_ASM55078v1	NZ_CP004350	Corynebacterium casei LMG S-19264 chromosome, complete genome	3	959359-959447	3	CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csb2gr5,WYL,cas4,DinG,RT	Type I-E	ATGTTCCCCGCACCAGCGGGGATGAGCC	28	0	0	NA	NA	I-E	1	1	TypeI-E	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csb2gr5,WYL,cas4,DinG,RT	NA,NA|136aa|down_4|NZ_CP004350.1_963268_963676_+,NA|141aa|down_9|NZ_CP004350.1_966056_966479_+	NA|192aa|up_9|NZ_CP004350.1_942398_942974_+	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|283aa|up_8|NZ_CP004350.1_943050_943899_+	PRK05756, PRK05756, pyridoxal kinase PdxY	cas3|943aa|up_7|NZ_CP004350.1_944226_947055_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|575aa|up_6|NZ_CP004350.1_947158_948883_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|194aa|up_5|NZ_CP004350.1_948957_949539_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|386aa|up_4|NZ_CP004350.1_949589_950747_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|up_3|NZ_CP004350.1_950762_951479_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|234aa|up_2|NZ_CP004350.1_951475_952177_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|297aa|up_1|NZ_CP004350.1_952229_953120_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|119aa|up_0|NZ_CP004350.1_953116_953473_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|278aa|down_0|NZ_CP004350.1_959650_960484_-	pfam13683, rve_3, Integrase core domain	NA|95aa|down_1|NZ_CP004350.1_960507_960792_-	pfam01527, HTH_Tnp_1, Transposase	NA|480aa|down_2|NZ_CP004350.1_961180_962620_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|98aa|down_3|NZ_CP004350.1_962825_963119_+	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|136aa|down_4|NZ_CP004350.1_963268_963676_+	NA	NA|77aa|down_5|NZ_CP004350.1_963665_963896_+	pfam14076, DUF4258, Domain of unknown function (DUF4258)	NA|111aa|down_6|NZ_CP004350.1_963901_964234_+	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|173aa|down_7|NZ_CP004350.1_964643_965162_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|191aa|down_8|NZ_CP004350.1_965277_965850_+	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|141aa|down_9|NZ_CP004350.1_966056_966479_+	NA
GCF_000550785.1_ASM55078v1	NZ_CP004350	Corynebacterium casei LMG S-19264 chromosome, complete genome	4	1052890-1053285	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6e,cas7,csb2gr5,cas3	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csb2gr5,WYL,cas4,DinG,RT	Unclear	CTTTGCCCCGCACACGCGGGGATGGTCCC,CTTTGCCCCGCACACGCGGGGATGGTCCCA,CTTTGCCCCGCACACGCGGGGATGGTCC	29,30,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	5,6,6	6	Unclear	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csb2gr5,WYL,cas4,DinG,RT	NA|62aa|up_6|NZ_CP004350.1_1042437_1042623_+,NA|187aa|down_7|NZ_CP004350.1_1066251_1066812_+,NA|178aa|down_9|NZ_CP004350.1_1067202_1067736_+	NA|282aa|up_9|NZ_CP004350.1_1037229_1038075_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|501aa|up_8|NZ_CP004350.1_1038067_1039570_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|374aa|up_7|NZ_CP004350.1_1040171_1041293_+	pfam14022, DUF4238, Protein of unknown function (DUF4238)	NA|62aa|up_6|NZ_CP004350.1_1042437_1042623_+	NA	NA|481aa|up_5|NZ_CP004350.1_1042738_1044181_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|386aa|up_4|NZ_CP004350.1_1044234_1045392_-	PRK06199, PRK06199, ornithine cyclodeaminase; Validated	cas6e|221aa|up_3|NZ_CP004350.1_1046078_1046741_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas7|445aa|up_2|NZ_CP004350.1_1046773_1048108_+	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	csb2gr5|419aa|up_1|NZ_CP004350.1_1048110_1049367_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas3|1123aa|up_0|NZ_CP004350.1_1049353_1052722_+	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	NA|227aa|down_0|NZ_CP004350.1_1053689_1054370_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|95aa|down_1|NZ_CP004350.1_1056984_1057269_+	pfam01527, HTH_Tnp_1, Transposase	NA|278aa|down_2|NZ_CP004350.1_1057292_1058126_+	pfam13683, rve_3, Integrase core domain	NA|1083aa|down_3|NZ_CP004350.1_1058845_1062094_+	cd07399, MPP_YvnB, Bacillus subtilis YvnB and related proteins, metallophosphatase domain	NA|169aa|down_4|NZ_CP004350.1_1062239_1062746_+	pfam08020, DUF1706, Protein of unknown function (DUF1706)	NA|422aa|down_5|NZ_CP004350.1_1063329_1064595_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|417aa|down_6|NZ_CP004350.1_1064668_1065919_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|187aa|down_7|NZ_CP004350.1_1066251_1066812_+	NA	NA|131aa|down_8|NZ_CP004350.1_1066817_1067210_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|178aa|down_9|NZ_CP004350.1_1067202_1067736_+	NA
