assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000525715.1_ASM52571v1	NZ_CP002427	Lactobacillus helveticus H9, complete genome	1	481197-481375	1	PILER-CR	no	cas14j	cas14j,Cas14u_CAS-V,cas3,DEDDh,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas2,cas4,cas8b2,cas6,cas14k,csa3	Unclear	CGTGGGTTCAAATCCCACAT	20	0	0	NA	NA	NA	2	2	TypeV	cas14j,Cas14u_CAS-V,cas3,DEDDh,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas2,cas4,cas8b2,cas6,cas14k,csa3	NA|143aa|up_2|NZ_CP002427.1_476509_476938_+,NA|224aa|down_7|NZ_CP002427.1_492659_493331_+	NA|307aa|up_9|NZ_CP002427.1_464911_465832_+	PRK13055, PRK13055, putative lipid kinase; Reviewed	NA|231aa|up_8|NZ_CP002427.1_465898_466591_+	pfam06736, DUF1211, Protein of unknown function (DUF1211)	NA|235aa|up_7|NZ_CP002427.1_466633_467338_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|459aa|up_6|NZ_CP002427.1_467899_469276_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|451aa|up_5|NZ_CP002427.1_469640_470993_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|67aa|up_4|NZ_CP002427.1_473889_474090_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|67aa|up_3|NZ_CP002427.1_476099_476300_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|143aa|up_2|NZ_CP002427.1_476509_476938_+	NA	NA|167aa|up_1|NZ_CP002427.1_478227_478728_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|203aa|up_0|NZ_CP002427.1_478830_479439_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	cas14j|397aa|down_0|NZ_CP002427.1_482478_483669_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|443aa|down_1|NZ_CP002427.1_484591_485920_-	PRK10720, PRK10720, uracil transporter; Provisional	NA|177aa|down_2|NZ_CP002427.1_485932_486463_-	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|490aa|down_3|NZ_CP002427.1_486753_488223_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|403aa|down_4|NZ_CP002427.1_488238_489447_-	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|361aa|down_5|NZ_CP002427.1_489573_490656_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|541aa|down_6|NZ_CP002427.1_490760_492383_+	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|224aa|down_7|NZ_CP002427.1_492659_493331_+	NA	NA|223aa|down_8|NZ_CP002427.1_493344_494013_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|273aa|down_9|NZ_CP002427.1_494055_494874_-	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold
GCF_000525715.1_ASM52571v1	NZ_CP002427	Lactobacillus helveticus H9, complete genome	2	1293797-1295719	1,1,2	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas14j,Cas14u_CAS-V,cas3,DEDDh,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas2,cas4,cas8b2,cas6,cas14k,csa3	Type I-E	AGGATCACCTCCACATACGTGGAGAATAC,GGATCACCTCCACATACGTGGAGAATAC,GATCACCTCCACATACGTGGAGAATAC	29,28,27	3	3	1294193-1294224|1294193-1294225|1294193-1294226	NZ_CP002427.1_157514-157545|NZ_CP002427.1_157514-157546|NZ_CP002427.1_157514-157547	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	31,31,30	31	TypeI-E	cas14j,Cas14u_CAS-V,cas3,DEDDh,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas2,cas4,cas8b2,cas6,cas14k,csa3	NA|99aa|up_2|NZ_CP002427.1_1291085_1291382_-,NA|98aa|up_1|NZ_CP002427.1_1291495_1291789_-,NA|46aa|down_8|NZ_CP002427.1_1309217_1309355_+	NA|411aa|up_9|NZ_CP002427.1_1281068_1282301_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|182aa|up_8|NZ_CP002427.1_1285382_1285928_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|105aa|up_7|NZ_CP002427.1_1286012_1286327_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|389aa|up_6|NZ_CP002427.1_1286496_1287663_-	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|367aa|up_5|NZ_CP002427.1_1287650_1288751_-	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|210aa|up_4|NZ_CP002427.1_1289152_1289782_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|350aa|up_3|NZ_CP002427.1_1289894_1290944_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|99aa|up_2|NZ_CP002427.1_1291085_1291382_-	NA	NA|98aa|up_1|NZ_CP002427.1_1291495_1291789_-	NA	NA|109aa|up_0|NZ_CP002427.1_1293448_1293775_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	DEDDh|294aa|down_0|NZ_CP002427.1_1295789_1296671_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|315aa|down_1|NZ_CP002427.1_1296670_1297615_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|218aa|down_2|NZ_CP002427.1_1297616_1298270_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|242aa|down_3|NZ_CP002427.1_1298283_1299009_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|371aa|down_4|NZ_CP002427.1_1298989_1300102_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|214aa|down_5|NZ_CP002427.1_1300120_1300762_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|563aa|down_6|NZ_CP002427.1_1300780_1302469_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|917aa|down_7|NZ_CP002427.1_1302706_1305457_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|46aa|down_8|NZ_CP002427.1_1309217_1309355_+	NA	NA|207aa|down_9|NZ_CP002427.1_1310704_1311325_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000525715.1_ASM52571v1	NZ_CP002427	Lactobacillus helveticus H9, complete genome	3	1307835-1309024	2,2,3	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas14j,Cas14u_CAS-V,cas3,DEDDh,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas2,cas4,cas8b2,cas6,cas14k,csa3	Type I-E	AGGATCACCTCCACATACGTGGAGAATAC,GGATCACCTCCACATACGTGGAGAATAC,GGATCACCTCCACATACGTGGAGAATAC	29,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	19,19,19	19	TypeI-E	cas14j,Cas14u_CAS-V,cas3,DEDDh,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas2,cas4,cas8b2,cas6,cas14k,csa3	NA|98aa|up_9|NZ_CP002427.1_1291495_1291789_-,NA|46aa|down_0|NZ_CP002427.1_1309217_1309355_+,NA|169aa|down_3|NZ_CP002427.1_1313937_1314444_+,NA|262aa|down_4|NZ_CP002427.1_1315648_1316434_-	NA|98aa|up_9|NZ_CP002427.1_1291495_1291789_-	NA	NA|109aa|up_8|NZ_CP002427.1_1293448_1293775_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	DEDDh|294aa|up_7|NZ_CP002427.1_1295789_1296671_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|315aa|up_6|NZ_CP002427.1_1296670_1297615_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|218aa|up_5|NZ_CP002427.1_1297616_1298270_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|242aa|up_4|NZ_CP002427.1_1298283_1299009_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|371aa|up_3|NZ_CP002427.1_1298989_1300102_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|214aa|up_2|NZ_CP002427.1_1300120_1300762_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|563aa|up_1|NZ_CP002427.1_1300780_1302469_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|917aa|up_0|NZ_CP002427.1_1302706_1305457_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|46aa|down_0|NZ_CP002427.1_1309217_1309355_+	NA	NA|207aa|down_1|NZ_CP002427.1_1310704_1311325_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|484aa|down_2|NZ_CP002427.1_1312306_1313758_-	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|169aa|down_3|NZ_CP002427.1_1313937_1314444_+	NA	NA|262aa|down_4|NZ_CP002427.1_1315648_1316434_-	NA	NA|235aa|down_5|NZ_CP002427.1_1316497_1317202_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|136aa|down_6|NZ_CP002427.1_1317221_1317629_-	pfam02566, OsmC, OsmC-like protein	NA|391aa|down_7|NZ_CP002427.1_1317647_1318820_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|90aa|down_8|NZ_CP002427.1_1320147_1320417_-	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators	NA|298aa|down_9|NZ_CP002427.1_1321250_1322144_-	pfam03217, SLAP, SLAP domain
GCF_000525715.1_ASM52571v1	NZ_CP002427	Lactobacillus helveticus H9, complete genome	4	1423044-1424790	3,3,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6	cas14j,Cas14u_CAS-V,cas3,DEDDh,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas2,cas4,cas8b2,cas6,cas14k,csa3	Unclear	CTTTACATTTCTCTTAAGTTAAATAAAAAC,CTTTACATTTCTCTTAAGTTAAATAAAAAC,CTTTACATTTCTCTTAAGTTAAATAAAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	26,25,24	26	Unclear	cas14j,Cas14u_CAS-V,cas3,DEDDh,DinG,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas2,cas4,cas8b2,cas6,cas14k,csa3	NA|177aa|up_8|NZ_CP002427.1_1412457_1412988_-,NA|174aa|up_7|NZ_CP002427.1_1413139_1413661_-,NA	NA|350aa|up_9|NZ_CP002427.1_1411228_1412278_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|177aa|up_8|NZ_CP002427.1_1412457_1412988_-	NA	NA|174aa|up_7|NZ_CP002427.1_1413139_1413661_-	NA	NA|645aa|up_6|NZ_CP002427.1_1413818_1415753_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|303aa|up_5|NZ_CP002427.1_1416043_1416952_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|444aa|up_4|NZ_CP002427.1_1416983_1418315_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|156aa|up_3|NZ_CP002427.1_1418317_1418785_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|201aa|up_2|NZ_CP002427.1_1418787_1419390_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|277aa|up_1|NZ_CP002427.1_1419386_1420217_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|888aa|up_0|NZ_CP002427.1_1420225_1422889_-	PRK05755, PRK05755, DNA polymerase I; Provisional	cas2|94aa|down_0|NZ_CP002427.1_1424974_1425256_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|330aa|down_1|NZ_CP002427.1_1425261_1426251_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|164aa|down_2|NZ_CP002427.1_1426260_1426752_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|810aa|down_3|NZ_CP002427.1_1426767_1429197_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|238aa|down_4|NZ_CP002427.1_1429339_1430053_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|301aa|down_5|NZ_CP002427.1_1430039_1430942_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|580aa|down_6|NZ_CP002427.1_1430960_1432700_-	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|252aa|down_7|NZ_CP002427.1_1432717_1433473_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|412aa|down_8|NZ_CP002427.1_1433706_1434942_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|326aa|down_9|NZ_CP002427.1_1435019_1435997_-	pfam17312, Helveticin_J, Bacteriocin helveticin-J
