assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	1	632199-632295	1	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	GGGTGCCGGATTCTCCTGCACCCC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA|70aa|up_3|NZ_CP006850.1_628501_628711_+,NA|99aa|up_1|NZ_CP006850.1_631040_631337_-,NA|154aa|down_1|NZ_CP006850.1_635342_635804_+	NA|390aa|up_9|NZ_CP006850.1_622680_623850_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|227aa|up_8|NZ_CP006850.1_624152_624833_+	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown]	NA|478aa|up_7|NZ_CP006850.1_624839_626273_+	cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2	NA|157aa|up_6|NZ_CP006850.1_626389_626860_+	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides	NA|320aa|up_5|NZ_CP006850.1_626966_627926_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|116aa|up_4|NZ_CP006850.1_627963_628311_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|70aa|up_3|NZ_CP006850.1_628501_628711_+	NA	NA|714aa|up_2|NZ_CP006850.1_628808_630950_+	COG1770, PtrB, Protease II [Amino acid transport and metabolism]	NA|99aa|up_1|NZ_CP006850.1_631040_631337_-	NA	NA|240aa|up_0|NZ_CP006850.1_631422_632142_+	COG3233, COG3233, Predicted deacetylase [General function prediction only]	NA|477aa|down_0|NZ_CP006850.1_633915_635346_+	TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter	NA|154aa|down_1|NZ_CP006850.1_635342_635804_+	NA	NA|457aa|down_2|NZ_CP006850.1_635816_637187_+	PRK07907, PRK07907, hypothetical protein; Provisional	NA|215aa|down_3|NZ_CP006850.1_637191_637836_-	pfam13483, Lactamase_B_3, Beta-lactamase superfamily domain	NA|79aa|down_4|NZ_CP006850.1_637949_638186_+	PRK05974, PRK05974, phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed	NA|227aa|down_5|NZ_CP006850.1_638182_638863_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|145aa|down_6|NZ_CP006850.1_639030_639465_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|430aa|down_7|NZ_CP006850.1_639512_640802_+	PRK02813, PRK02813, putative aminopeptidase 2; Provisional	NA|520aa|down_8|NZ_CP006850.1_640759_642319_-	PRK13375, pimE, mannosyltransferase; Provisional	NA|765aa|down_9|NZ_CP006850.1_642209_644504_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	2	1026615-1026715	2	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	GGTGGTGGGTTCCGTGATCCGTC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA|66aa|up_2|NZ_CP006850.1_1023151_1023349_-,NA|263aa|up_1|NZ_CP006850.1_1023587_1024376_+,NA|172aa|up_0|NZ_CP006850.1_1024466_1024982_+,NA|111aa|down_0|NZ_CP006850.1_1027775_1028108_+,NA|462aa|down_7|NZ_CP006850.1_1055707_1057093_+	NA|136aa|up_9|NZ_CP006850.1_1018495_1018903_+	PRK05593, rplR, 50S ribosomal protein L18; Reviewed	NA|212aa|up_8|NZ_CP006850.1_1018952_1019588_+	PRK00550, rpsE, 30S ribosomal protein S5; Validated	NA|62aa|up_7|NZ_CP006850.1_1019589_1019775_+	PRK05611, rpmD, 50S ribosomal protein L30; Reviewed	NA|149aa|up_6|NZ_CP006850.1_1019771_1020218_+	PRK05592, rplO, 50S ribosomal protein L15; Reviewed	NA|441aa|up_5|NZ_CP006850.1_1020417_1021740_+	PRK09204, secY, preprotein translocase subunit SecY; Reviewed	NA|182aa|up_4|NZ_CP006850.1_1021736_1022282_+	PRK00279, adk, adenylate kinase; Reviewed	NA|267aa|up_3|NZ_CP006850.1_1022287_1023088_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|66aa|up_2|NZ_CP006850.1_1023151_1023349_-	NA	NA|263aa|up_1|NZ_CP006850.1_1023587_1024376_+	NA	NA|172aa|up_0|NZ_CP006850.1_1024466_1024982_+	NA	NA|111aa|down_0|NZ_CP006850.1_1027775_1028108_+	NA	NA|999aa|down_1|NZ_CP006850.1_1028110_1031107_+	pfam17228, SGP, Sulphur globule protein	NA|264aa|down_2|NZ_CP006850.1_1031103_1031895_+	pfam14011, ESX-1_EspG, EspG family	NA|147aa|down_3|NZ_CP006850.1_1033605_1034046_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|107aa|down_4|NZ_CP006850.1_1034199_1034520_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|167aa|down_5|NZ_CP006850.1_1034516_1035017_+	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|6697aa|down_6|NZ_CP006850.1_1035033_1055124_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|462aa|down_7|NZ_CP006850.1_1055707_1057093_+	NA	NA|638aa|down_8|NZ_CP006850.1_1057258_1059172_+	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	NA|271aa|down_9|NZ_CP006850.1_1059168_1059981_+	pfam14011, ESX-1_EspG, EspG family
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	3	1103928-1104035	3	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	CCGCGGCGATCGAGCCGGTGATGT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA|96aa|up_3|NZ_CP006850.1_1098882_1099170_+,NA|61aa|up_1|NZ_CP006850.1_1101217_1101400_+,NA|406aa|down_3|NZ_CP006850.1_1109870_1111088_-,NA|397aa|down_4|NZ_CP006850.1_1111114_1112305_-,NA|405aa|down_5|NZ_CP006850.1_1112311_1113526_-,NA|416aa|down_7|NZ_CP006850.1_1115296_1116544_-,NA|404aa|down_8|NZ_CP006850.1_1116540_1117752_-	NA|270aa|up_9|NZ_CP006850.1_1091500_1092310_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|328aa|up_8|NZ_CP006850.1_1092312_1093296_-	pfam18007, DUF5593, Domain of unknown function (DUF5593)	NA|187aa|up_7|NZ_CP006850.1_1093423_1093984_+	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|561aa|up_6|NZ_CP006850.1_1093985_1095668_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|504aa|up_5|NZ_CP006850.1_1095781_1097293_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|429aa|up_4|NZ_CP006850.1_1097289_1098576_-	TIGR00891, Carboxylic_acid_transporter_protein_homolog, putative sialic acid transporter	NA|96aa|up_3|NZ_CP006850.1_1098882_1099170_+	NA	NA|685aa|up_2|NZ_CP006850.1_1099166_1101221_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|61aa|up_1|NZ_CP006850.1_1101217_1101400_+	NA	NA|472aa|up_0|NZ_CP006850.1_1101557_1102973_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|1351aa|down_0|NZ_CP006850.1_1104617_1108670_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|104aa|down_1|NZ_CP006850.1_1109105_1109417_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|102aa|down_2|NZ_CP006850.1_1109473_1109779_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|406aa|down_3|NZ_CP006850.1_1109870_1111088_-	NA	NA|397aa|down_4|NZ_CP006850.1_1111114_1112305_-	NA	NA|405aa|down_5|NZ_CP006850.1_1112311_1113526_-	NA	NA|539aa|down_6|NZ_CP006850.1_1113603_1115220_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|416aa|down_7|NZ_CP006850.1_1115296_1116544_-	NA	NA|404aa|down_8|NZ_CP006850.1_1116540_1117752_-	NA	NA|467aa|down_9|NZ_CP006850.1_1117894_1119295_-	TIGR03931, T7SS_Rv3446c, type VII secretion-associated protein, Rv3446c family, C-terminal domain
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	4	1274759-1274862	4	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	TGGGACGACGACGAGCTCGCCAAGAA	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA,NA|64aa|down_3|NZ_CP006850.1_1280071_1280263_-	NA|210aa|up_9|NZ_CP006850.1_1263235_1263865_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|520aa|up_8|NZ_CP006850.1_1263866_1265426_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|260aa|up_7|NZ_CP006850.1_1265432_1266212_-	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|305aa|up_6|NZ_CP006850.1_1266301_1267216_+	PRK00055, PRK00055, ribonuclease Z; Reviewed	NA|233aa|up_5|NZ_CP006850.1_1267324_1268023_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|399aa|up_4|NZ_CP006850.1_1268068_1269265_+	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|377aa|up_3|NZ_CP006850.1_1269489_1270620_+	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|161aa|up_2|NZ_CP006850.1_1270658_1271141_-	pfam13772, AIG2_2, AIG2-like family	NA|468aa|up_1|NZ_CP006850.1_1271359_1272763_+	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed	NA|380aa|up_0|NZ_CP006850.1_1273067_1274207_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|392aa|down_0|NZ_CP006850.1_1275508_1276684_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|498aa|down_1|NZ_CP006850.1_1276685_1278179_-	cd07789, FGGY_CsGK_like, Cellulomonas sp	NA|583aa|down_2|NZ_CP006850.1_1278313_1280062_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|64aa|down_3|NZ_CP006850.1_1280071_1280263_-	NA	NA|156aa|down_4|NZ_CP006850.1_1280462_1280930_+	PRK06242, PRK06242, flavodoxin; Provisional	NA|255aa|down_5|NZ_CP006850.1_1281015_1281780_-	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|1617aa|down_6|NZ_CP006850.1_1281818_1286669_-	PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional	NA|154aa|down_7|NZ_CP006850.1_1286897_1287359_+	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|510aa|down_8|NZ_CP006850.1_1287387_1288917_-	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B	NA|151aa|down_9|NZ_CP006850.1_1289023_1289476_+	smart00344, HTH_ASNC, helix_turn_helix ASNC type
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	5	1601180-1601267	5	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	TCATGTCAGTACTCCACTTCCTGCGAGCGT	30	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA|65aa|up_6|NZ_CP006850.1_1596874_1597069_-,NA|53aa|up_1|NZ_CP006850.1_1599067_1599226_-,NA|160aa|down_0|NZ_CP006850.1_1605426_1605906_-,NA|306aa|down_1|NZ_CP006850.1_1605915_1606833_-,NA|62aa|down_2|NZ_CP006850.1_1607886_1608072_+,NA|457aa|down_3|NZ_CP006850.1_1608482_1609853_+	NA|360aa|up_9|NZ_CP006850.1_1593665_1594745_-	pfam00004, AAA, ATPase family associated with various cellular activities (AAA)	NA|483aa|up_8|NZ_CP006850.1_1594907_1596356_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|149aa|up_7|NZ_CP006850.1_1596374_1596821_-	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|65aa|up_6|NZ_CP006850.1_1596874_1597069_-	NA	NA|47aa|up_5|NZ_CP006850.1_1597191_1597332_+	pfam12651, RHH_3, Ribbon-helix-helix domain	NA|74aa|up_4|NZ_CP006850.1_1597339_1597561_-	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|246aa|up_3|NZ_CP006850.1_1597587_1598325_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|250aa|up_2|NZ_CP006850.1_1598321_1599071_-	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|53aa|up_1|NZ_CP006850.1_1599067_1599226_-	NA	NA|605aa|up_0|NZ_CP006850.1_1599318_1601133_-	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|160aa|down_0|NZ_CP006850.1_1605426_1605906_-	NA	NA|306aa|down_1|NZ_CP006850.1_1605915_1606833_-	NA	NA|62aa|down_2|NZ_CP006850.1_1607886_1608072_+	NA	NA|457aa|down_3|NZ_CP006850.1_1608482_1609853_+	NA	NA|192aa|down_4|NZ_CP006850.1_1609849_1610425_+	cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily	NA|238aa|down_5|NZ_CP006850.1_1610641_1611355_+	pfam02517, Abi, CAAX protease self-immunity	NA|301aa|down_6|NZ_CP006850.1_1611284_1612187_-	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|192aa|down_7|NZ_CP006850.1_1612292_1612868_+	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|146aa|down_8|NZ_CP006850.1_1612878_1613316_+	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown]	NA|766aa|down_9|NZ_CP006850.1_1613340_1615638_-	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	6	1907370-1907443	6	CRISPRCasFinder	no	cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Type I-E	GCATCAGGGTGTCCTGTCTTCGC	23	0	0	NA	NA	NA	1	1	TypeI-E	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA|127aa|up_7|NZ_CP006850.1_1902829_1903210_-,NA|155aa|up_5|NZ_CP006850.1_1903729_1904194_-,NA	NA|158aa|up_9|NZ_CP006850.1_1900971_1901445_+	PRK05422, smpB, SsrA-binding protein SmpB	NA|288aa|up_8|NZ_CP006850.1_1901441_1902305_+	pfam00892, EamA, EamA-like transporter family	NA|127aa|up_7|NZ_CP006850.1_1902829_1903210_-	NA	NA|172aa|up_6|NZ_CP006850.1_1903301_1903817_-	pfam14063, DUF4254, Protein of unknown function (DUF4254)	NA|155aa|up_5|NZ_CP006850.1_1903729_1904194_-	NA	NA|296aa|up_4|NZ_CP006850.1_1904447_1905335_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|70aa|up_3|NZ_CP006850.1_1905324_1905534_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|114aa|up_2|NZ_CP006850.1_1905667_1906009_-	COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]	NA|128aa|up_1|NZ_CP006850.1_1906005_1906389_-	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891)	NA|231aa|up_0|NZ_CP006850.1_1906551_1907244_-	pfam05988, DUF899, Bacterial protein of unknown function (DUF899)	NA|933aa|down_0|NZ_CP006850.1_1907751_1910550_+	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily	NA|264aa|down_1|NZ_CP006850.1_1910587_1911379_+	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|209aa|down_2|NZ_CP006850.1_1911607_1912234_+	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator	NA|555aa|down_3|NZ_CP006850.1_1912230_1913895_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	cas6e|247aa|down_4|NZ_CP006850.1_1915084_1915825_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|282aa|down_5|NZ_CP006850.1_1915821_1916667_-	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas7|464aa|down_6|NZ_CP006850.1_1916663_1918055_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|189aa|down_7|NZ_CP006850.1_1918000_1918567_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|528aa|down_8|NZ_CP006850.1_1918550_1920134_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|999aa|down_9|NZ_CP006850.1_1920193_1923190_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	7	1923400-1923489	7	CRISPRCasFinder	no	cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Type I-E	GGACCATCCCCGCGTGCGCGGGGAGCAC	28	0	0	NA	NA	I-E	1	1	TypeI-E	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA,NA|103aa|down_2|NZ_CP006850.1_1925843_1926152_+	NA|933aa|up_9|NZ_CP006850.1_1907751_1910550_+	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily	NA|264aa|up_8|NZ_CP006850.1_1910587_1911379_+	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|209aa|up_7|NZ_CP006850.1_1911607_1912234_+	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator	NA|555aa|up_6|NZ_CP006850.1_1912230_1913895_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	cas6e|247aa|up_5|NZ_CP006850.1_1915084_1915825_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|282aa|up_4|NZ_CP006850.1_1915821_1916667_-	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas7|464aa|up_3|NZ_CP006850.1_1916663_1918055_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|189aa|up_2|NZ_CP006850.1_1918000_1918567_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|528aa|up_1|NZ_CP006850.1_1918550_1920134_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|999aa|up_0|NZ_CP006850.1_1920193_1923190_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|66aa|down_0|NZ_CP006850.1_1924490_1924688_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|295aa|down_1|NZ_CP006850.1_1924693_1925578_-	pfam13560, HTH_31, Helix-turn-helix domain	NA|103aa|down_2|NZ_CP006850.1_1925843_1926152_+	NA	NA|254aa|down_3|NZ_CP006850.1_1926840_1927602_-	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs	NA|321aa|down_4|NZ_CP006850.1_1927794_1928757_-	COG2367, PenP, Beta-lactamase class A [Defense mechanisms]	NA|221aa|down_5|NZ_CP006850.1_1928785_1929448_+	pfam13305, WHG, WHG domain	NA|158aa|down_6|NZ_CP006850.1_1929464_1929938_-	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|245aa|down_7|NZ_CP006850.1_1930079_1930814_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|131aa|down_8|NZ_CP006850.1_1930795_1931188_-	cd07235, MRD, Mitomycin C resistance protein (MRD)	NA|335aa|down_9|NZ_CP006850.1_1931406_1932411_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	8	1923709-1924042	8,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Type I-E	GGACCATCCCCGCGTGCGCGGGGAGCAC,GGACCATCCCCGCGTGCGCGGGGAGCAC,GGACCATCCCCGCGTGCGCGGGGAGCACG	28,28,29	0	0	NA	NA	I-E:I-E:I-E	5,5,3	5	TypeI-E	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA,NA|103aa|down_2|NZ_CP006850.1_1925843_1926152_+	NA|933aa|up_9|NZ_CP006850.1_1907751_1910550_+	cd06268, PBP1_ABC_transporter_LIVBP-like, periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily	NA|264aa|up_8|NZ_CP006850.1_1910587_1911379_+	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|209aa|up_7|NZ_CP006850.1_1911607_1912234_+	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator	NA|555aa|up_6|NZ_CP006850.1_1912230_1913895_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	cas6e|247aa|up_5|NZ_CP006850.1_1915084_1915825_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|282aa|up_4|NZ_CP006850.1_1915821_1916667_-	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas7|464aa|up_3|NZ_CP006850.1_1916663_1918055_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|189aa|up_2|NZ_CP006850.1_1918000_1918567_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|528aa|up_1|NZ_CP006850.1_1918550_1920134_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|999aa|up_0|NZ_CP006850.1_1920193_1923190_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|66aa|down_0|NZ_CP006850.1_1924490_1924688_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|295aa|down_1|NZ_CP006850.1_1924693_1925578_-	pfam13560, HTH_31, Helix-turn-helix domain	NA|103aa|down_2|NZ_CP006850.1_1925843_1926152_+	NA	NA|254aa|down_3|NZ_CP006850.1_1926840_1927602_-	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs	NA|321aa|down_4|NZ_CP006850.1_1927794_1928757_-	COG2367, PenP, Beta-lactamase class A [Defense mechanisms]	NA|221aa|down_5|NZ_CP006850.1_1928785_1929448_+	pfam13305, WHG, WHG domain	NA|158aa|down_6|NZ_CP006850.1_1929464_1929938_-	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|245aa|down_7|NZ_CP006850.1_1930079_1930814_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|131aa|down_8|NZ_CP006850.1_1930795_1931188_-	cd07235, MRD, Mitomycin C resistance protein (MRD)	NA|335aa|down_9|NZ_CP006850.1_1931406_1932411_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	9	1926255-1926646	9,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6e,cas5,cas7,cse2gr11,cas8e,cas3	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Type I-E	GGACCATCCCCGCGTGCGCGGGGAGCAC,GGACCATCCCCGCGTGCGCGGGGAGCAC,GGACCATCCCCGCGTGCGCGGGGAGCAC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	TypeI-E	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA|103aa|up_0|NZ_CP006850.1_1925843_1926152_+,NA|64aa|down_7|NZ_CP006850.1_1932502_1932694_-	NA|555aa|up_9|NZ_CP006850.1_1912230_1913895_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	cas6e|247aa|up_8|NZ_CP006850.1_1915084_1915825_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|282aa|up_7|NZ_CP006850.1_1915821_1916667_-	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas7|464aa|up_6|NZ_CP006850.1_1916663_1918055_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|189aa|up_5|NZ_CP006850.1_1918000_1918567_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|528aa|up_4|NZ_CP006850.1_1918550_1920134_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|999aa|up_3|NZ_CP006850.1_1920193_1923190_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|66aa|up_2|NZ_CP006850.1_1924490_1924688_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|295aa|up_1|NZ_CP006850.1_1924693_1925578_-	pfam13560, HTH_31, Helix-turn-helix domain	NA|103aa|up_0|NZ_CP006850.1_1925843_1926152_+	NA	NA|254aa|down_0|NZ_CP006850.1_1926840_1927602_-	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs	NA|321aa|down_1|NZ_CP006850.1_1927794_1928757_-	COG2367, PenP, Beta-lactamase class A [Defense mechanisms]	NA|221aa|down_2|NZ_CP006850.1_1928785_1929448_+	pfam13305, WHG, WHG domain	NA|158aa|down_3|NZ_CP006850.1_1929464_1929938_-	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|245aa|down_4|NZ_CP006850.1_1930079_1930814_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|131aa|down_5|NZ_CP006850.1_1930795_1931188_-	cd07235, MRD, Mitomycin C resistance protein (MRD)	NA|335aa|down_6|NZ_CP006850.1_1931406_1932411_+	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|64aa|down_7|NZ_CP006850.1_1932502_1932694_-	NA	NA|568aa|down_8|NZ_CP006850.1_1933012_1934716_-	cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	NA|554aa|down_9|NZ_CP006850.1_1934715_1936377_-	PRK08315, PRK08315, AMP-binding domain protein; Validated
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	10	2799578-2799676	10	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	GCCTCCGCGCCTGATCGCTCATGC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA,NA	NA|291aa|up_9|NZ_CP006850.1_2786516_2787389_-	PLN02244, PLN02244, tocopherol O-methyltransferase	NA|427aa|up_8|NZ_CP006850.1_2787441_2788722_-	cd00687, Terpene_cyclase_nonplant_C1, Non-plant Terpene Cyclases, Class 1	NA|469aa|up_7|NZ_CP006850.1_2788736_2790143_-	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor	NA|973aa|up_6|NZ_CP006850.1_2790552_2793471_+	PRK07868, PRK07868, acyl-CoA synthetase; Validated	NA|379aa|up_5|NZ_CP006850.1_2793508_2794645_-	PRK11706, PRK11706, TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional	NA|375aa|up_4|NZ_CP006850.1_2794634_2795759_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|730aa|up_3|NZ_CP006850.1_2796072_2798262_+	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|158aa|up_2|NZ_CP006850.1_2798258_2798732_+	pfam04138, GtrA, GtrA-like protein	NA|74aa|up_1|NZ_CP006850.1_2798742_2798964_+	COG2835, COG2835, Uncharacterized conserved protein [Function unknown]	NA|198aa|up_0|NZ_CP006850.1_2798970_2799564_-	pfam17920, TetR_C_16, Tetracyclin repressor-like, C-terminal domain	NA|246aa|down_0|NZ_CP006850.1_2800428_2801166_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|245aa|down_1|NZ_CP006850.1_2801295_2802030_-	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif	NA|398aa|down_2|NZ_CP006850.1_2802191_2803385_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|312aa|down_3|NZ_CP006850.1_2803431_2804367_+	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family	NA|108aa|down_4|NZ_CP006850.1_2804450_2804774_+	pfam12587, DUF3761, Protein of unknown function (DUF3761)	NA|208aa|down_5|NZ_CP006850.1_2804823_2805447_+	PRK00802, PRK00802, DNA-3-methyladenine glycosylase	NA|555aa|down_6|NZ_CP006850.1_2805454_2807119_-	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated	NA|223aa|down_7|NZ_CP006850.1_2807321_2807990_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|133aa|down_8|NZ_CP006850.1_2808069_2808468_+	pfam13564, DoxX_2, DoxX-like family	NA|323aa|down_9|NZ_CP006850.1_2808545_2809514_-	pfam12852, Cupin_6, Cupin
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	11	3213527-3213820	11	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	TCGCCGCCGTGCTCACGGGCGGCCTCGGCC	30	0	0	NA	NA	NA	4	4	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA,NA|94aa|down_4|NZ_CP006850.1_3218308_3218590_-,NA|68aa|down_5|NZ_CP006850.1_3218774_3218978_-,NA|84aa|down_8|NZ_CP006850.1_3220834_3221086_-	NA|475aa|up_9|NZ_CP006850.1_3199749_3201174_+	pfam00668, Condensation, Condensation domain	NA|537aa|up_8|NZ_CP006850.1_3201208_3202819_+	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|319aa|up_7|NZ_CP006850.1_3202829_3203786_+	PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase; Provisional	NA|695aa|up_6|NZ_CP006850.1_3203712_3205797_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|187aa|up_5|NZ_CP006850.1_3205992_3206553_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|155aa|up_4|NZ_CP006850.1_3206641_3207106_+	TIGR00026, Hypothetical_protein_Rv1261c/MT1299/Mb1292c	NA|800aa|up_3|NZ_CP006850.1_3207196_3209596_+	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|688aa|up_2|NZ_CP006850.1_3209706_3211770_+	pfam04734, Ceramidase_alk, Neutral/alkaline non-lysosomal ceramidase, N-terminal	NA|213aa|up_1|NZ_CP006850.1_3211775_3212414_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|278aa|up_0|NZ_CP006850.1_3212552_3213386_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|158aa|down_0|NZ_CP006850.1_3214501_3214975_-	pfam00582, Usp, Universal stress protein family	NA|142aa|down_1|NZ_CP006850.1_3214996_3215422_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|459aa|down_2|NZ_CP006850.1_3215411_3216788_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|470aa|down_3|NZ_CP006850.1_3216894_3218304_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|94aa|down_4|NZ_CP006850.1_3218308_3218590_-	NA	NA|68aa|down_5|NZ_CP006850.1_3218774_3218978_-	NA	NA|77aa|down_6|NZ_CP006850.1_3219476_3219707_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|301aa|down_7|NZ_CP006850.1_3219835_3220738_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|84aa|down_8|NZ_CP006850.1_3220834_3221086_-	NA	NA|262aa|down_9|NZ_CP006850.1_3221712_3222498_+	pfam13622, 4HBT_3, Thioesterase-like superfamily
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	12	6101609-6101705	12	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	ACGTCGGACACAACCACAACCGCGGCACCGAGACAC	36	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA,NA|309aa|down_7|NZ_CP006850.1_6107999_6108926_-	NA|296aa|up_9|NZ_CP006850.1_6092085_6092973_-	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|186aa|up_8|NZ_CP006850.1_6093072_6093630_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|244aa|up_7|NZ_CP006850.1_6093695_6094427_-	PRK00358, pyrH, uridylate kinase; Provisional	NA|275aa|up_6|NZ_CP006850.1_6094946_6095771_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|290aa|up_5|NZ_CP006850.1_6095896_6096766_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|123aa|up_4|NZ_CP006850.1_6097035_6097404_-	pfam02656, DUF202, Domain of unknown function (DUF202)	NA|144aa|up_3|NZ_CP006850.1_6097400_6097832_-	COG2149, COG2149, Predicted membrane protein [Function unknown]	NA|429aa|up_2|NZ_CP006850.1_6098296_6099583_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|172aa|up_1|NZ_CP006850.1_6099699_6100215_+	pfam09348, DUF1990, Domain of unknown function (DUF1990)	NA|308aa|up_0|NZ_CP006850.1_6100353_6101277_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|399aa|down_0|NZ_CP006850.1_6101806_6103003_-	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|503aa|down_1|NZ_CP006850.1_6103277_6104786_-	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|119aa|down_2|NZ_CP006850.1_6104785_6105142_-	PRK12497, PRK12497, YraN family protein	NA|102aa|down_3|NZ_CP006850.1_6105250_6105556_-	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|229aa|down_4|NZ_CP006850.1_6105670_6106357_-	PRK00015, rnhB, ribonuclease HII; Validated	NA|284aa|down_5|NZ_CP006850.1_6106504_6107356_-	TIGR02227, Inactive_signal_peptidase_IA	NA|114aa|down_6|NZ_CP006850.1_6107482_6107824_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|309aa|down_7|NZ_CP006850.1_6107999_6108926_-	NA	NA|834aa|down_8|NZ_CP006850.1_6109063_6111565_-	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|231aa|down_9|NZ_CP006850.1_6111822_6112515_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	13	6555587-6555656	13	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	GTCGACGGGTTCAAGGCCGAGGCCG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA|193aa|up_7|NZ_CP006850.1_6551505_6552084_+,NA|110aa|up_6|NZ_CP006850.1_6552092_6552422_+,NA|103aa|up_5|NZ_CP006850.1_6552423_6552732_+,NA|185aa|up_4|NZ_CP006850.1_6552728_6553283_+,NA|152aa|up_3|NZ_CP006850.1_6553287_6553743_-,NA|221aa|up_2|NZ_CP006850.1_6553903_6554566_+,NA|116aa|up_1|NZ_CP006850.1_6554651_6554999_+,NA|91aa|up_0|NZ_CP006850.1_6555151_6555424_+,NA|302aa|down_0|NZ_CP006850.1_6561051_6561957_+,NA|571aa|down_1|NZ_CP006850.1_6561953_6563666_+,NA|176aa|down_2|NZ_CP006850.1_6563718_6564246_+,NA|79aa|down_5|NZ_CP006850.1_6565850_6566087_+,NA|137aa|down_6|NZ_CP006850.1_6566101_6566512_+,NA|152aa|down_7|NZ_CP006850.1_6566495_6566951_+,NA|111aa|down_8|NZ_CP006850.1_6566943_6567276_+,NA|261aa|down_9|NZ_CP006850.1_6567299_6568082_+	NA|223aa|up_9|NZ_CP006850.1_6550002_6550671_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|274aa|up_8|NZ_CP006850.1_6550682_6551504_+	pfam11651, P22_CoatProtein, P22 coat protein - gene protein 5	NA|193aa|up_7|NZ_CP006850.1_6551505_6552084_+	NA	NA|110aa|up_6|NZ_CP006850.1_6552092_6552422_+	NA	NA|103aa|up_5|NZ_CP006850.1_6552423_6552732_+	NA	NA|185aa|up_4|NZ_CP006850.1_6552728_6553283_+	NA	NA|152aa|up_3|NZ_CP006850.1_6553287_6553743_-	NA	NA|221aa|up_2|NZ_CP006850.1_6553903_6554566_+	NA	NA|116aa|up_1|NZ_CP006850.1_6554651_6554999_+	NA	NA|91aa|up_0|NZ_CP006850.1_6555151_6555424_+	NA	NA|302aa|down_0|NZ_CP006850.1_6561051_6561957_+	NA	NA|571aa|down_1|NZ_CP006850.1_6561953_6563666_+	NA	NA|176aa|down_2|NZ_CP006850.1_6563718_6564246_+	NA	NA|198aa|down_3|NZ_CP006850.1_6564238_6564832_+	pfam13529, Peptidase_C39_2, Peptidase_C39 like family	NA|340aa|down_4|NZ_CP006850.1_6564834_6565854_+	pfam08924, DUF1906, Domain of unknown function (DUF1906)	NA|79aa|down_5|NZ_CP006850.1_6565850_6566087_+	NA	NA|137aa|down_6|NZ_CP006850.1_6566101_6566512_+	NA	NA|152aa|down_7|NZ_CP006850.1_6566495_6566951_+	NA	NA|111aa|down_8|NZ_CP006850.1_6566943_6567276_+	NA	NA|261aa|down_9|NZ_CP006850.1_6567299_6568082_+	NA
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	14	7049155-7049257	14	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	TGCGACGGGCCTGGAGGAGGCAGCCTG	27	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA|91aa|up_0|NZ_CP006850.1_7047440_7047713_+,NA|399aa|down_0|NZ_CP006850.1_7050006_7051203_-,NA|196aa|down_2|NZ_CP006850.1_7052364_7052952_-,NA|54aa|down_9|NZ_CP006850.1_7062979_7063141_+	NA|189aa|up_9|NZ_CP006850.1_7038045_7038612_-	pfam14030, DUF4245, Protein of unknown function (DUF4245)	NA|349aa|up_8|NZ_CP006850.1_7038792_7039839_+	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed	NA|468aa|up_7|NZ_CP006850.1_7039933_7041337_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|396aa|up_6|NZ_CP006850.1_7041442_7042630_-	PRK07588, PRK07588, FAD-binding domain	NA|238aa|up_5|NZ_CP006850.1_7042728_7043442_+	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain	NA|148aa|up_4|NZ_CP006850.1_7043498_7043942_+	COG4308, LimA, Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|282aa|up_3|NZ_CP006850.1_7044017_7044863_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|191aa|up_2|NZ_CP006850.1_7044985_7045558_-	pfam08310, LGFP, LGFP repeat	NA|460aa|up_1|NZ_CP006850.1_7045759_7047139_-	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|91aa|up_0|NZ_CP006850.1_7047440_7047713_+	NA	NA|399aa|down_0|NZ_CP006850.1_7050006_7051203_-	NA	NA|311aa|down_1|NZ_CP006850.1_7051428_7052361_+	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|196aa|down_2|NZ_CP006850.1_7052364_7052952_-	NA	NA|259aa|down_3|NZ_CP006850.1_7053052_7053829_-	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|208aa|down_4|NZ_CP006850.1_7054149_7054773_+	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|508aa|down_5|NZ_CP006850.1_7054877_7056401_+	cd07302, CHD, cyclase homology domain	NA|313aa|down_6|NZ_CP006850.1_7058606_7059545_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|472aa|down_7|NZ_CP006850.1_7060403_7061819_-	PRK05257, PRK05257, malate:quinone oxidoreductase; Validated	NA|304aa|down_8|NZ_CP006850.1_7061909_7062821_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|54aa|down_9|NZ_CP006850.1_7062979_7063141_+	NA
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	15	7152530-7152643	15	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	ACGCAGGCTGCCGCCTCCGGCCGCGTCGCTGCAGTCGC	38	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA,NA|296aa|down_6|NZ_CP006850.1_7159700_7160588_+,NA|183aa|down_8|NZ_CP006850.1_7162967_7163516_+	NA|429aa|up_9|NZ_CP006850.1_7142045_7143332_-	TIGR03444, EgtA_Cys_ligase, ergothioneine biosynthesis glutamate--cysteine ligase EgtA	NA|399aa|up_8|NZ_CP006850.1_7143695_7144892_+	cd06453, SufS_like, Cysteine desulfurase (SufS)-like	NA|369aa|up_7|NZ_CP006850.1_7144900_7146007_-	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|193aa|up_6|NZ_CP006850.1_7146023_7146602_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|201aa|up_5|NZ_CP006850.1_7146624_7147227_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|221aa|up_4|NZ_CP006850.1_7147474_7148137_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|185aa|up_3|NZ_CP006850.1_7148481_7149036_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|540aa|up_2|NZ_CP006850.1_7149176_7150796_+	COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]	NA|186aa|up_1|NZ_CP006850.1_7150803_7151361_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|158aa|up_0|NZ_CP006850.1_7151450_7151924_-	pfam14337, DUF4393, Domain of unknown function (DUF4393)	NA|441aa|down_0|NZ_CP006850.1_7152751_7154074_+	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|302aa|down_1|NZ_CP006850.1_7154064_7154970_+	pfam14337, DUF4393, Domain of unknown function (DUF4393)	NA|599aa|down_2|NZ_CP006850.1_7155107_7156904_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|283aa|down_3|NZ_CP006850.1_7157370_7158219_+	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family	NA|310aa|down_4|NZ_CP006850.1_7158322_7159252_-	PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|69aa|down_5|NZ_CP006850.1_7159492_7159699_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|296aa|down_6|NZ_CP006850.1_7159700_7160588_+	NA	NA|746aa|down_7|NZ_CP006850.1_7160584_7162822_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|183aa|down_8|NZ_CP006850.1_7162967_7163516_+	NA	NA|116aa|down_9|NZ_CP006850.1_7163681_7164029_-	pfam07045, DUF1330, Domain of unknown function (DUF1330)
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	16	7627578-7627677	16	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	GCCGGTGAGCGACAATCGCGCAGCGGCTC	29	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA|74aa|up_3|NZ_CP006850.1_7625313_7625535_-,NA|145aa|down_7|NZ_CP006850.1_7633529_7633964_-	NA|339aa|up_9|NZ_CP006850.1_7617824_7618841_+	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit	NA|245aa|up_8|NZ_CP006850.1_7618998_7619733_+	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein	NA|1139aa|up_7|NZ_CP006850.1_7619810_7623227_-	COG3903, COG3903, Predicted ATPase [General function prediction only]	NA|290aa|up_6|NZ_CP006850.1_7623380_7624250_+	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|130aa|up_5|NZ_CP006850.1_7624254_7624644_-	COG1950, COG1950, Predicted membrane protein [Function unknown]	NA|195aa|up_4|NZ_CP006850.1_7624729_7625314_-	CHL00095, clpC, Clp protease ATP binding subunit	NA|74aa|up_3|NZ_CP006850.1_7625313_7625535_-	NA	NA|400aa|up_2|NZ_CP006850.1_7625615_7626815_-	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]	NA|113aa|up_1|NZ_CP006850.1_7626750_7627089_-	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|78aa|up_0|NZ_CP006850.1_7627312_7627546_+	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins	NA|68aa|down_0|NZ_CP006850.1_7627833_7628037_+	PRK01919, tatB, Sec-independent protein translocase subunit TatB	NA|304aa|down_1|NZ_CP006850.1_7628040_7628952_-	cd00950, DHDPS, Dihydrodipicolinate synthase (DHDPS)	NA|299aa|down_2|NZ_CP006850.1_7629058_7629955_+	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|218aa|down_3|NZ_CP006850.1_7630017_7630671_+	pfam13646, HEAT_2, HEAT repeats	NA|337aa|down_4|NZ_CP006850.1_7630705_7631716_+	cd04788, HTH_NolA-AlbR, Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR	NA|387aa|down_5|NZ_CP006850.1_7631784_7632945_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|143aa|down_6|NZ_CP006850.1_7633012_7633441_-	pfam12680, SnoaL_2, SnoaL-like domain	NA|145aa|down_7|NZ_CP006850.1_7633529_7633964_-	NA	NA|223aa|down_8|NZ_CP006850.1_7633977_7634646_-	pfam05988, DUF899, Bacterial protein of unknown function (DUF899)	NA|224aa|down_9|NZ_CP006850.1_7634906_7635578_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	17	7766437-7766526	17	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	GACCGCGCACGCTCCAGGCGAGCG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA|145aa|up_9|NZ_CP006850.1_7746856_7747291_-,NA|98aa|down_2|NZ_CP006850.1_7770135_7770429_-,NA|143aa|down_7|NZ_CP006850.1_7774326_7774755_-	NA|145aa|up_9|NZ_CP006850.1_7746856_7747291_-	NA	NA|468aa|up_8|NZ_CP006850.1_7747301_7748705_-	PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed	NA|382aa|up_7|NZ_CP006850.1_7748818_7749964_-	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)	NA|690aa|up_6|NZ_CP006850.1_7749962_7752032_+	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]	NA|536aa|up_5|NZ_CP006850.1_7752048_7753656_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|287aa|up_4|NZ_CP006850.1_7753740_7754601_-	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only]	NA|606aa|up_3|NZ_CP006850.1_7754665_7756483_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|202aa|up_2|NZ_CP006850.1_7756548_7757154_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|258aa|up_1|NZ_CP006850.1_7763822_7764596_-	pfam05985, EutC, Ethanolamine ammonia-lyase light chain (EutC)	NA|468aa|up_0|NZ_CP006850.1_7764592_7765996_-	PRK15067, PRK15067, ethanolamine ammonia-lyase subunit EutB	NA|414aa|down_0|NZ_CP006850.1_7766989_7768231_+	pfam03929, PepSY_TM, PepSY-associated TM region	NA|542aa|down_1|NZ_CP006850.1_7768307_7769933_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|98aa|down_2|NZ_CP006850.1_7770135_7770429_-	NA	NA|292aa|down_3|NZ_CP006850.1_7770870_7771746_-	CHL00095, clpC, Clp protease ATP binding subunit	NA|362aa|down_4|NZ_CP006850.1_7771798_7772884_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|294aa|down_5|NZ_CP006850.1_7772979_7773861_-	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family	NA|96aa|down_6|NZ_CP006850.1_7773921_7774209_-	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|143aa|down_7|NZ_CP006850.1_7774326_7774755_-	NA	NA|485aa|down_8|NZ_CP006850.1_7774924_7776379_-	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|558aa|down_9|NZ_CP006850.1_7776403_7778077_-	cd17595, REC_TrxB, phosphoacceptor receiver (REC) domain a fused response regulator with a thioredoxin reductase output domain
GCF_000523235.1_ASM52323v1	NZ_CP006850	Nocardia nova SH22a chromosome, complete genome	18	8134682-8134776	18	CRISPRCasFinder	no		WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	Orphan	GCCGGGAGCGACGGGGCCGGAGG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DinG,cas3,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,RT,cas4	NA|95aa|up_5|NZ_CP006850.1_8127014_8127299_-,NA|65aa|up_4|NZ_CP006850.1_8127498_8127693_-,NA|516aa|up_2|NZ_CP006850.1_8130052_8131600_-,NA|367aa|up_1|NZ_CP006850.1_8131640_8132741_-,NA|127aa|down_3|NZ_CP006850.1_8140997_8141378_-	NA|432aa|up_9|NZ_CP006850.1_8121996_8123292_-	cd03784, GT1_Gtf-like, UDP-glycosyltransferases and similar proteins	NA|219aa|up_8|NZ_CP006850.1_8123874_8124531_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|398aa|up_7|NZ_CP006850.1_8124700_8125894_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|267aa|up_6|NZ_CP006850.1_8126193_8126994_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|95aa|up_5|NZ_CP006850.1_8127014_8127299_-	NA	NA|65aa|up_4|NZ_CP006850.1_8127498_8127693_-	NA	NA|611aa|up_3|NZ_CP006850.1_8127943_8129776_-	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	NA|516aa|up_2|NZ_CP006850.1_8130052_8131600_-	NA	NA|367aa|up_1|NZ_CP006850.1_8131640_8132741_-	NA	NA|452aa|up_0|NZ_CP006850.1_8133175_8134531_+	pfam03583, LIP, Secretory lipase	NA|249aa|down_0|NZ_CP006850.1_8135511_8136258_+	pfam01936, NYN, NYN domain	NA|1408aa|down_1|NZ_CP006850.1_8136257_8140481_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|127aa|down_2|NZ_CP006850.1_8140531_8140912_+	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|127aa|down_3|NZ_CP006850.1_8140997_8141378_-	NA	NA|238aa|down_4|NZ_CP006850.1_8141518_8142232_-	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|224aa|down_5|NZ_CP006850.1_8142290_8142962_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|389aa|down_6|NZ_CP006850.1_8142958_8144125_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|391aa|down_7|NZ_CP006850.1_8144126_8145299_-	pfam01594, AI-2E_transport, AI-2E family transporter	NA|490aa|down_8|NZ_CP006850.1_8145645_8147115_+	cd07302, CHD, cyclase homology domain	NA|365aa|down_9|NZ_CP006850.1_8147210_8148305_+	COG0392, COG0392, Predicted integral membrane protein [Function unknown]
