assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000521725.1_ASM52172v1	NZ_CP006954	Bibersteinia trehalosi USDA-ARS-USMARC-188 chromosome, complete genome	1	809211-809378	1,1	PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas7,cas8c,cas5,cas3	cas3,csa3,DEDDh,DinG,cas2,cas1,cas7,cas8c,cas5,cas9,cas14j	 Type I-U?,Type I-C,Type I-U	TGTTTCAACTCACAGCCACCCGGAGGTGGCTGCT,GTTTCAACTCACAGCTACCCGGAGGTGGCTGCT	34,33	0	0	NA	NA	NA:NA	2,2	2	TypeI-U?,TypeI-C,TypeI-U	cas3,csa3,DEDDh,DinG,cas2,cas1,cas7,cas8c,cas5,cas9,cas14j	NA|130aa|up_6|NZ_CP006954.1_801941_802331_+,NA	NA|149aa|up_9|NZ_CP006954.1_798224_798671_+	PRK10694, PRK10694, acyl-CoA thioester hydrolase YciA	NA|99aa|up_8|NZ_CP006954.1_798691_798988_+	PRK11370, PRK11370, YciI family protein	NA|968aa|up_7|NZ_CP006954.1_799034_801938_+	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|130aa|up_6|NZ_CP006954.1_801941_802331_+	NA	NA|320aa|up_5|NZ_CP006954.1_802464_803424_+	PRK09455, rseB, anti-sigma E factor; Provisional	NA|142aa|up_4|NZ_CP006954.1_803435_803861_+	COG3086, RseC, Positive regulator of sigma E activity [Signal transduction mechanisms]	NA|562aa|up_3|NZ_CP006954.1_803870_805556_+	PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase FadD	NA|289aa|up_2|NZ_CP006954.1_805646_806513_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|314aa|up_1|NZ_CP006954.1_806612_807554_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|476aa|up_0|NZ_CP006954.1_807615_809043_-	PRK11316, PRK11316, bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	cas2|98aa|down_0|NZ_CP006954.1_809577_809871_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP006954.1_809915_810929_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas7|281aa|down_2|NZ_CP006954.1_811645_812488_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|669aa|down_3|NZ_CP006954.1_812515_814522_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|247aa|down_4|NZ_CP006954.1_814518_815259_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|821aa|down_5|NZ_CP006954.1_815270_817733_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|506aa|down_6|NZ_CP006954.1_819815_821333_-	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|438aa|down_7|NZ_CP006954.1_821652_822966_-	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|737aa|down_8|NZ_CP006954.1_823264_825475_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|307aa|down_9|NZ_CP006954.1_825483_826404_+	PRK10073, PRK10073, putative glycosyl transferase; Provisional
GCF_000521725.1_ASM52172v1	NZ_CP006954	Bibersteinia trehalosi USDA-ARS-USMARC-188 chromosome, complete genome	2	817914-819546	2,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas7,cas8c,cas5,cas3	cas3,csa3,DEDDh,DinG,cas2,cas1,cas7,cas8c,cas5,cas9,cas14j	 Type I-U?,Type I-C,Type I-U	GTTTCAACTCACAGCTACGCGTACGTAGCTGG,GTTTCAACTCACAGCTACGCGTACGTAGCTGG,GTTTCAACTCACAGCTACGCGTACGTAGCTGG	32,32,32	1	1	819213-819246	NZ_CP006954.1_1225384-1225417	NA:NA:NA	24,24,23	24	TypeI-U?,TypeI-C,TypeI-U	cas3,csa3,DEDDh,DinG,cas2,cas1,cas7,cas8c,cas5,cas9,cas14j	NA,NA|258aa|down_5|NZ_CP006954.1_827750_828524_-,NA|385aa|down_9|NZ_CP006954.1_832701_833856_-	NA|562aa|up_9|NZ_CP006954.1_803870_805556_+	PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase FadD	NA|289aa|up_8|NZ_CP006954.1_805646_806513_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|314aa|up_7|NZ_CP006954.1_806612_807554_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|476aa|up_6|NZ_CP006954.1_807615_809043_-	PRK11316, PRK11316, bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	cas2|98aa|up_5|NZ_CP006954.1_809577_809871_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|up_4|NZ_CP006954.1_809915_810929_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas7|281aa|up_3|NZ_CP006954.1_811645_812488_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|669aa|up_2|NZ_CP006954.1_812515_814522_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|247aa|up_1|NZ_CP006954.1_814518_815259_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|821aa|up_0|NZ_CP006954.1_815270_817733_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|506aa|down_0|NZ_CP006954.1_819815_821333_-	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|438aa|down_1|NZ_CP006954.1_821652_822966_-	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|737aa|down_2|NZ_CP006954.1_823264_825475_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|307aa|down_3|NZ_CP006954.1_825483_826404_+	PRK10073, PRK10073, putative glycosyl transferase; Provisional	NA|397aa|down_4|NZ_CP006954.1_826486_827677_+	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|258aa|down_5|NZ_CP006954.1_827750_828524_-	NA	NA|470aa|down_6|NZ_CP006954.1_828683_830093_-	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|305aa|down_7|NZ_CP006954.1_830105_831020_-	pfam02574, S-methyl_trans, Homocysteine S-methyltransferase	NA|385aa|down_8|NZ_CP006954.1_831299_832454_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|385aa|down_9|NZ_CP006954.1_832701_833856_-	NA
GCF_000521725.1_ASM52172v1	NZ_CP006954	Bibersteinia trehalosi USDA-ARS-USMARC-188 chromosome, complete genome	3	1425185-1425415	3,2,3	PILER-CR,CRT,CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas2,cas1,cas7,cas8c,cas5,cas9,cas14j	Orphan	CGTTTCAACTCTCAGCCACCTACAGGTAGCTGCT,AGCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC,GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC	34,33,32	0	0	NA	NA	NA:NA:NA	2,3,2	3	Orphan	cas3,csa3,DEDDh,DinG,cas2,cas1,cas7,cas8c,cas5,cas9,cas14j	NA,NA|155aa|down_2|NZ_CP006954.1_1427816_1428281_-	NA|96aa|up_9|NZ_CP006954.1_1413243_1413531_+	PRK10324, PRK10324, ribosome-associated translation inhibitor RaiA	NA|305aa|up_8|NZ_CP006954.1_1413582_1414497_-	PRK00971, PRK00971, glutaminase; Provisional	NA|589aa|up_7|NZ_CP006954.1_1414611_1416378_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|192aa|up_6|NZ_CP006954.1_1416538_1417114_+	PRK14150, PRK14150, heat shock protein GrpE; Provisional	NA|90aa|up_5|NZ_CP006954.1_1417210_1417480_+	pfam07798, DUF1640, Protein of unknown function (DUF1640)	NA|151aa|up_4|NZ_CP006954.1_1417540_1417993_+	pfam04284, DUF441, Protein of unknown function (DUF441)	NA|1331aa|up_3|NZ_CP006954.1_1417992_1421985_+	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional	NA|146aa|up_2|NZ_CP006954.1_1422204_1422642_-	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|308aa|up_1|NZ_CP006954.1_1422678_1423602_-	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|375aa|up_0|NZ_CP006954.1_1423725_1424850_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|469aa|down_0|NZ_CP006954.1_1425431_1426838_-	pfam04317, DUF463, YcjX-like family, DUF463	NA|280aa|down_1|NZ_CP006954.1_1426925_1427765_+	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|155aa|down_2|NZ_CP006954.1_1427816_1428281_-	NA	NA|52aa|down_3|NZ_CP006954.1_1428281_1428437_-	PRK05114, PRK05114, YoaH family protein	NA|243aa|down_4|NZ_CP006954.1_1428454_1429183_-	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional	NA|103aa|down_5|NZ_CP006954.1_1429232_1429541_-	pfam04287, DUF446, tRNA pseudouridine synthase C	NA|472aa|down_6|NZ_CP006954.1_1429592_1431008_+	PRK09427, PRK09427, bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA|253aa|down_7|NZ_CP006954.1_1431291_1432050_-	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional	NA|410aa|down_8|NZ_CP006954.1_1432069_1433299_-	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional	NA|207aa|down_9|NZ_CP006954.1_1433314_1433935_-	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion]
GCF_000521725.1_ASM52172v1	NZ_CP006954	Bibersteinia trehalosi USDA-ARS-USMARC-188 chromosome, complete genome	4	1530974-1531801	4,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2	cas3,csa3,DEDDh,DinG,cas2,cas1,cas7,cas8c,cas5,cas9,cas14j	 or Type II-C?, Type II-B,Type II-C,Type II-B,Type II-A	ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC,ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC,ATTGTAGCACTGCGAAATGAGAAAGGGAGCTACAAC	36,36,36	1	1	1531670-1531699	NZ_CP006954.1_977033-977004	NA:NA:NA	12,12,12	12	orTypeII-C?,TypeII-B,TypeII-C,TypeII-B,TypeII-A	cas3,csa3,DEDDh,DinG,cas2,cas1,cas7,cas8c,cas5,cas9,cas14j	NA|1332aa|up_9|NZ_CP006954.1_1515259_1519255_-,NA	NA|1332aa|up_9|NZ_CP006954.1_1515259_1519255_-	NA	NA|406aa|up_8|NZ_CP006954.1_1519251_1520469_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|366aa|up_7|NZ_CP006954.1_1520647_1521745_-	PRK14992, PRK14992, tetrathionate reductase subunit TtrC	NA|242aa|up_6|NZ_CP006954.1_1521746_1522472_-	PRK14993, PRK14993, tetrathionate reductase subunit TtrB	NA|319aa|up_5|NZ_CP006954.1_1522644_1523601_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|552aa|up_4|NZ_CP006954.1_1523733_1525389_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|196aa|up_3|NZ_CP006954.1_1525514_1526102_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	cas9|1046aa|up_2|NZ_CP006954.1_1526291_1529429_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|305aa|up_1|NZ_CP006954.1_1529481_1530396_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|109aa|up_0|NZ_CP006954.1_1530388_1530715_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|467aa|down_0|NZ_CP006954.1_1531812_1533213_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|291aa|down_1|NZ_CP006954.1_1533310_1534183_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|189aa|down_2|NZ_CP006954.1_1534182_1534749_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|254aa|down_3|NZ_CP006954.1_1534791_1535553_-	PRK10434, srlR, DNA-binding transcriptional repressor	NA|215aa|down_4|NZ_CP006954.1_1535579_1536224_-	PRK10826, PRK10826, hexitol phosphatase HxpB	NA|119aa|down_5|NZ_CP006954.1_1536285_1536642_-	PRK10234, PRK10234, transcriptional regulator GutM	NA|260aa|down_6|NZ_CP006954.1_1536690_1537470_-	PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional	NA|122aa|down_7|NZ_CP006954.1_1537483_1537849_-	PRK10377, PRK10377, PTS glucitol/sorbitol transporter subunit IIA	NA|333aa|down_8|NZ_CP006954.1_1537858_1538857_-	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|185aa|down_9|NZ_CP006954.1_1538885_1539440_-	TIGR00821, Glucitol/sorbitol_permease_IIC_component, PTS system, glucitol/sorbitol-specific, IIC component
