assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000521685.1_ASM52168v1	NZ_CP006953	Mannheimia varigena USDA-ARS-USMARC-1388, complete genome	1	229368-229554	1	PILER-CR	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG	Orphan	GGTAAAGATGGTGCAA	16	0	0	NA	NA	NA	3	3	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG	NA,NA	NA|77aa|up_9|NZ_CP006953.1_210865_211096_+	COG3924, COG3924, Predicted membrane protein [Function unknown]	NA|478aa|up_8|NZ_CP006953.1_211088_212522_+	PRK09442, panF, sodium/pantothenate symporter	NA|215aa|up_7|NZ_CP006953.1_212690_213335_+	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed	NA|263aa|up_6|NZ_CP006953.1_213337_214126_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|266aa|up_5|NZ_CP006953.1_214133_214931_+	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|222aa|up_4|NZ_CP006953.1_214998_215664_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|344aa|up_3|NZ_CP006953.1_215718_216750_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|298aa|up_2|NZ_CP006953.1_217026_217920_+	PRK11151, PRK11151, DNA-binding transcriptional regulator OxyR; Provisional	NA|212aa|up_1|NZ_CP006953.1_217912_218548_+	PRK11202, PRK11202, HTH-type transcriptional repressor FabR	NA|385aa|up_0|NZ_CP006953.1_218652_219807_-	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism]	NA|466aa|down_0|NZ_CP006953.1_232472_233870_-	PRK11058, PRK11058, GTPase HflX; Provisional	NA|92aa|down_1|NZ_CP006953.1_233888_234164_-	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|320aa|down_2|NZ_CP006953.1_234233_235193_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|629aa|down_3|NZ_CP006953.1_235195_237082_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|413aa|down_4|NZ_CP006953.1_237202_238441_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|281aa|down_5|NZ_CP006953.1_238442_239285_+	PRK01637, PRK01637, virulence factor BrkB family protein	NA|145aa|down_6|NZ_CP006953.1_239259_239694_+	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|275aa|down_7|NZ_CP006953.1_239726_240551_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|431aa|down_8|NZ_CP006953.1_240602_241895_-	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|241aa|down_9|NZ_CP006953.1_242066_242789_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
GCF_000521685.1_ASM52168v1	NZ_CP006953	Mannheimia varigena USDA-ARS-USMARC-1388, complete genome	2	733510-734206	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG	 Type I-U?,Type I-U,Type I-C	GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC,GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC,GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC	32,32,32	0	0	NA	NA	NA:NA:NA	9,10,9	10	TypeI-U?,TypeI-U,TypeI-C	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG	NA,NA	NA|321aa|up_9|NZ_CP006953.1_721598_722561_-	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA|588aa|up_8|NZ_CP006953.1_722639_724403_-	TIGR03549, TIGR03549, YcaO domain protein	cas3|810aa|up_7|NZ_CP006953.1_724586_727016_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|241aa|up_6|NZ_CP006953.1_727035_727758_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|686aa|up_5|NZ_CP006953.1_727754_729812_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|281aa|up_4|NZ_CP006953.1_729832_730675_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|224aa|up_3|NZ_CP006953.1_730676_731348_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|227aa|up_2|NZ_CP006953.1_731352_732033_+	pfam18753, Nmad2, Nucleotide modification associated domain 2	cas1|338aa|up_1|NZ_CP006953.1_731954_732968_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP006953.1_733017_733311_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|801aa|down_0|NZ_CP006953.1_734307_736710_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|362aa|down_1|NZ_CP006953.1_737219_738305_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|216aa|down_2|NZ_CP006953.1_738314_738962_+	PRK09289, PRK09289, riboflavin synthase	NA|400aa|down_3|NZ_CP006953.1_738973_740173_+	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|155aa|down_4|NZ_CP006953.1_740278_740743_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|502aa|down_5|NZ_CP006953.1_740788_742294_-	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|305aa|down_6|NZ_CP006953.1_742350_743265_-	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]	NA|203aa|down_7|NZ_CP006953.1_743403_744012_+	PRK01904, PRK01904, DUF2057 domain-containing protein	NA|464aa|down_8|NZ_CP006953.1_744165_745557_+	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|1175aa|down_9|NZ_CP006953.1_745622_749147_+	PRK10876, recB, exonuclease V subunit beta; Provisional
GCF_000521685.1_ASM52168v1	NZ_CP006953	Mannheimia varigena USDA-ARS-USMARC-1388, complete genome	3	969371-970734	3,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG	Orphan	GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC,GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC,GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC	32,32,32	0	0	NA	NA	NA:NA:NA	19,20,20	20	Orphan	cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2,DinG	NA,NA	NA|287aa|up_9|NZ_CP006953.1_952203_953064_+	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase	NA|623aa|up_8|NZ_CP006953.1_953073_954942_+	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|1368aa|up_7|NZ_CP006953.1_955007_959111_+	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|589aa|up_6|NZ_CP006953.1_959213_960980_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|556aa|up_5|NZ_CP006953.1_960979_962647_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|210aa|up_4|NZ_CP006953.1_962763_963393_+	PRK00218, PRK00218, lysogenization regulator HflD	NA|456aa|up_3|NZ_CP006953.1_963426_964794_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|254aa|up_2|NZ_CP006953.1_964860_965622_+	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator	NA|292aa|up_1|NZ_CP006953.1_965614_966490_+	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase	NA|811aa|up_0|NZ_CP006953.1_966661_969094_+	PRK14939, gyrB, DNA gyrase subunit B; Provisional	NA|492aa|down_0|NZ_CP006953.1_970830_972306_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|501aa|down_1|NZ_CP006953.1_972454_973957_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|358aa|down_2|NZ_CP006953.1_974038_975112_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|211aa|down_3|NZ_CP006953.1_975374_976007_+	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|279aa|down_4|NZ_CP006953.1_976033_976870_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|140aa|down_5|NZ_CP006953.1_976941_977361_-	PRK10328, PRK10328, DNA-binding protein StpA	NA|513aa|down_6|NZ_CP006953.1_977792_979331_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|251aa|down_7|NZ_CP006953.1_979565_980318_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|397aa|down_8|NZ_CP006953.1_980337_981528_+	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|271aa|down_9|NZ_CP006953.1_981527_982340_+	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit
