The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP006953	Mannheimia varigena USDA-ARS-USMARC-1388, complete genome	2228291	535579	543397	2228291	tRNA	Escherichia_phage(16.67%)	6	NA	NA
WP_025342307.1|535579_536521_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	84.5	2.0e-125
WP_025342308.1|536583_537297_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	A0A1X9I669	Streptococcus_phage	29.0	2.7e-05
WP_025342309.1|537360_537741_+	deoxyribonuclease	NA	A0A023NGV8	Nitrincola_phage	52.3	2.0e-28
WP_025342310.1|537838_540529_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	A0A172JHV7	Bacillus_phage	30.9	1.1e-107
WP_025342311.1|540627_542559_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	28.9	1.0e-51
WP_025342312.1|542638_543397_+|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	S4VW33	Pandoravirus	27.4	1.3e-13
>prophage 2
NZ_CP006953	Mannheimia varigena USDA-ARS-USMARC-1388, complete genome	2228291	793542	803395	2228291		Hokovirus(16.67%)	10	NA	NA
WP_025342457.1|793542_795384_+	response regulator	NA	A0A1V0SGX0	Hokovirus	29.8	1.2e-41
WP_025342458.1|795396_795951_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	44.0	3.9e-28
WP_025342459.1|796014_797355_-	porin	NA	NA	NA	NA	NA
WP_025217577.1|797708_798161_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_025217576.1|798217_799438_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	29.4	5.0e-28
WP_025217575.1|799468_799852_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	75.0	1.3e-51
WP_025217574.1|799960_800284_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	1.7e-23
WP_025342460.1|800293_800815_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_025342461.1|800849_801482_+	DUF2625 family protein	NA	NA	NA	NA	NA
WP_025342462.1|801541_803395_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	43.2	3.9e-109
>prophage 3
NZ_CP006953	Mannheimia varigena USDA-ARS-USMARC-1388, complete genome	2228291	1869967	1879647	2228291		Enterobacteria_phage(66.67%)	9	NA	NA
WP_025343026.1|1869967_1871731_-	DNA primase	NA	A0A1B0WMR3	Flavobacterium_phage	30.6	1.2e-38
WP_006252283.1|1871886_1872102_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_025343027.1|1872350_1873607_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_025216598.1|1873660_1874203_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.1	3.2e-51
WP_025343028.1|1874211_1875087_-	dTDP-4-dehydrorhamnose reductase	NA	A0A140G5S3	Enterobacteria_phage	40.8	1.3e-41
WP_025216596.1|1875086_1875965_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	66.0	7.1e-109
WP_025216595.1|1875966_1877034_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	52.2	2.5e-100
WP_025343029.1|1877048_1877948_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_025343030.1|1877937_1879647_-	hypothetical protein	NA	F2Y0P4	Organic_Lake_phycodnavirus	31.0	1.5e-14
