assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000521655.1_ASM52165v1	NZ_CP006943	Mannheimia varigena USDA-ARS-USMARC-1296 chromosome, complete genome	1	1314276-1314840	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DEDDh,DinG,csa3,cas2,cas1,RT,cas4,cas7,cas8c,cas5	Orphan	GTTTCAACTCACAGCTACACGAAGGTAGCTGC,GTTTCAACTCACAGCTACACGAAGGTAGCTGC,GTTTCAACTCACAGCTACACGAAGGTAGCTGC	32,32,32	1	1	1314505-1314538	NZ_CP006943.1_937784-937817	NA:NA:NA	8,8,7	8	Orphan	cas3,DEDDh,DinG,csa3,cas2,cas1,RT,cas4,cas7,cas8c,cas5	NA,NA	NA|271aa|up_9|NZ_CP006943.1_1302668_1303481_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP006943.1_1303480_1304671_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP006943.1_1304690_1305443_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|513aa|up_6|NZ_CP006943.1_1305677_1307216_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|140aa|up_5|NZ_CP006943.1_1307648_1308068_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|279aa|up_4|NZ_CP006943.1_1308139_1308976_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|211aa|up_3|NZ_CP006943.1_1309002_1309635_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP006943.1_1309897_1310971_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP006943.1_1311052_1312555_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP006943.1_1312703_1314179_-	PRK11712, PRK11712, ribonuclease G; Provisional	NA|811aa|down_0|NZ_CP006943.1_1315115_1317548_-	PRK14939, gyrB, DNA gyrase subunit B; Provisional	NA|292aa|down_1|NZ_CP006943.1_1317719_1318595_-	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase	NA|254aa|down_2|NZ_CP006943.1_1318587_1319349_-	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator	NA|456aa|down_3|NZ_CP006943.1_1319415_1320783_-	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|210aa|down_4|NZ_CP006943.1_1320816_1321446_-	PRK00218, PRK00218, lysogenization regulator HflD	NA|556aa|down_5|NZ_CP006943.1_1321562_1323230_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_6|NZ_CP006943.1_1323229_1324996_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|1368aa|down_7|NZ_CP006943.1_1325098_1329202_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|623aa|down_8|NZ_CP006943.1_1329267_1331136_-	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|287aa|down_9|NZ_CP006943.1_1331145_1332006_-	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase
GCF_000521655.1_ASM52165v1	NZ_CP006943	Mannheimia varigena USDA-ARS-USMARC-1296 chromosome, complete genome	2	1496013-1496444	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,RT,cas4,cas7,cas8c,cas5,cas3	cas3,DEDDh,DinG,csa3,cas2,cas1,RT,cas4,cas7,cas8c,cas5	Type I-C, Type I-U?,Type I-U	GTTTCAACTCACAGCCACGTGGAGGTGGCTGC,GTTTCAACTCACAGCCACG,GGTTTCAACTCACAGCCACGTGGAGGTGGCTGC	32,19,33	0	0	NA	NA	NA:NA:NA	6,6,3	6	TypeI-C,TypeI-U?,TypeI-U	cas3,DEDDh,DinG,csa3,cas2,cas1,RT,cas4,cas7,cas8c,cas5	NA,NA|114aa|down_2|NZ_CP006943.1_1498043_1498385_-,NA|61aa|down_3|NZ_CP006943.1_1498454_1498637_-	NA|1175aa|up_9|NZ_CP006943.1_1481071_1484596_-	PRK10876, recB, exonuclease V subunit beta; Provisional	NA|464aa|up_8|NZ_CP006943.1_1484661_1486053_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|203aa|up_7|NZ_CP006943.1_1486206_1486815_-	PRK01904, PRK01904, DUF2057 domain-containing protein	NA|305aa|up_6|NZ_CP006943.1_1486953_1487868_+	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]	NA|502aa|up_5|NZ_CP006943.1_1487924_1489430_+	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|155aa|up_4|NZ_CP006943.1_1489475_1489940_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|400aa|up_3|NZ_CP006943.1_1490046_1491246_-	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|216aa|up_2|NZ_CP006943.1_1491257_1491905_-	PRK09289, PRK09289, riboflavin synthase	NA|362aa|up_1|NZ_CP006943.1_1491914_1493000_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|801aa|up_0|NZ_CP006943.1_1493509_1495912_+	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_CP006943.1_1496641_1496935_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP006943.1_1496984_1497998_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|114aa|down_2|NZ_CP006943.1_1498043_1498385_-	NA	NA|61aa|down_3|NZ_CP006943.1_1498454_1498637_-	NA	RT|493aa|down_4|NZ_CP006943.1_1498645_1500124_-	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	cas4|224aa|down_5|NZ_CP006943.1_1500156_1500828_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_6|NZ_CP006943.1_1500827_1501691_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|593aa|down_7|NZ_CP006943.1_1501700_1503479_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|226aa|down_8|NZ_CP006943.1_1503475_1504153_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|288aa|down_9|NZ_CP006943.1_1504345_1505209_-	pfam18184, SLATT_3, SMODS and SLOG-associating 2TM effector domain 3
